Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48498 * 109.46988 * 275.35716 * 3 2 1 5 5 H 1.48493 * 109.46927 * 35.35835 * 3 2 1 6 6 H 1.48507 * 109.47087 * 155.35990 * 3 2 1 7 7 C 1.38814 * 119.99558 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00431 * 337.45844 * 7 2 1 9 9 N 1.36943 * 120.00224 * 157.46453 * 7 2 1 10 10 C 1.46503 * 119.99336 * 322.48633 * 9 7 2 11 11 C 1.52996 * 109.46710 * 266.24832 * 10 9 7 12 12 O 1.42908 * 109.46857 * 66.25544 * 11 10 9 13 13 C 1.46497 * 120.00216 * 142.47886 * 9 7 2 14 14 C 1.53042 * 109.46089 * 300.00496 * 13 9 7 15 15 C 1.53191 * 109.30928 * 181.38544 * 14 13 9 16 16 N 1.46923 * 108.77726 * 305.36384 * 15 14 13 17 17 C 1.34782 * 120.63167 * 233.58855 * 16 15 14 18 18 O 1.21284 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00278 * 180.27068 * 17 16 15 20 20 N 1.46496 * 109.47285 * 179.72477 * 19 17 16 21 21 C 1.36607 * 127.11751 * 265.02656 * 20 19 17 22 22 N 1.30335 * 107.27494 * 179.97438 * 21 20 19 23 23 N 1.28529 * 110.00043 * 0.02562 * 22 21 20 24 24 C 1.31037 * 109.85829 * 359.72081 * 23 22 21 25 25 O 1.35533 * 126.45006 * 180.29945 * 24 23 22 26 26 C 1.46919 * 118.74053 * 53.86054 * 16 15 14 27 27 C 1.53036 * 109.45864 * 60.07299 * 13 9 7 28 28 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47743 * 26.25597 * 10 9 7 30 30 H 1.08998 * 109.46703 * 146.25625 * 10 9 7 31 31 H 1.08999 * 109.47261 * 186.25309 * 11 10 9 32 32 H 1.09002 * 109.47639 * 306.25425 * 11 10 9 33 33 H 0.96703 * 113.99464 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.45996 * 180.02562 * 13 9 7 35 35 H 1.08996 * 109.49823 * 61.43530 * 14 13 9 36 36 H 1.09004 * 109.52115 * 301.34848 * 14 13 9 37 37 H 1.09006 * 109.58243 * 185.57412 * 15 14 13 38 38 H 1.09006 * 109.70567 * 65.22338 * 15 14 13 39 39 H 1.08994 * 109.47673 * 299.73026 * 19 17 16 40 40 H 1.09008 * 109.46772 * 59.72745 * 19 17 16 41 41 H 1.07993 * 126.36140 * 0.03341 * 21 20 19 42 42 H 0.96694 * 114.00347 * 270.16346 * 25 24 23 43 43 H 1.09002 * 109.59051 * 65.92716 * 26 16 15 44 44 H 1.08999 * 109.58776 * 186.35465 * 26 16 15 45 45 H 1.09003 * 109.49947 * 298.56075 * 27 13 9 46 46 H 1.08996 * 109.50073 * 58.62820 * 27 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3845 2.1117 -1.3939 5 1 1.5089 2.6172 0.8102 6 1 3.5999 1.4100 0.5837 7 6 2.0101 -1.2022 -0.0005 8 1 1.5320 -2.1020 0.3576 9 7 3.3011 -1.2474 -0.4551 10 6 3.7019 -0.4320 -1.6043 11 6 3.5792 -1.2603 -2.8848 12 8 2.2033 -1.5604 -3.1279 13 6 4.2814 -2.1110 0.2079 14 6 4.4197 -1.6936 1.6738 15 6 5.4704 -2.5760 2.3548 16 7 5.1023 -3.9851 2.1609 17 6 4.9923 -4.8176 3.2152 18 8 5.1984 -4.4056 4.3371 19 6 4.6197 -6.2617 2.9993 20 7 4.5724 -6.9520 4.2906 21 6 5.5721 -7.6769 4.8749 22 7 5.1159 -8.1176 6.0135 23 7 3.9048 -7.7225 6.1844 24 6 3.5238 -6.9994 5.1602 25 8 2.3139 -6.4113 4.9953 26 6 4.8621 -4.4710 0.7953 27 6 3.8128 -3.5659 0.1321 28 1 -0.4849 0.8401 -0.0004 29 1 3.0543 0.4419 -1.6734 30 1 4.7354 -0.1094 -1.4780 31 1 3.9811 -0.6932 -3.7244 32 1 4.1392 -2.1887 -2.7722 33 1 2.0502 -2.0850 -3.9257 34 1 5.2462 -2.0141 -0.2899 35 1 3.4611 -1.8141 2.1784 36 1 4.7306 -0.6502 1.7276 37 1 5.5021 -2.3500 3.4207 38 1 6.4492 -2.3899 1.9126 39 1 3.6416 -6.3172 2.5216 40 1 5.3638 -6.7372 2.3601 41 1 6.5576 -7.8515 4.4692 42 1 1.6633 -6.9690 4.5472 43 1 5.7911 -4.4357 0.2262 44 1 4.4923 -5.4957 0.8318 45 1 2.8599 -3.6688 0.6513 46 1 3.6914 -3.8551 -0.9117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098351556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = -26.635601 kcal Electronic energy + Delta-G solvation = -30801.952097 eV Core-core repulsion = 26536.180056 eV Total energy + Delta-G solvation = -4265.772041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.06961 -41.27725 -39.29244 -38.70219 -37.75601 -36.32870 -35.89663 -33.92836 -32.73518 -32.02463 -30.91742 -29.84323 -29.15645 -26.58337 -24.76418 -24.30109 -23.51032 -23.36983 -22.74569 -21.57763 -20.39071 -19.83495 -18.81118 -18.32041 -18.06278 -18.03183 -17.16878 -16.95939 -16.69437 -16.63764 -16.33262 -16.06587 -15.42549 -15.40660 -15.09175 -14.88416 -14.60164 -14.50496 -14.28901 -14.11980 -13.61163 -13.48893 -13.42283 -13.26053 -13.14625 -12.83876 -12.73826 -12.53490 -12.24292 -12.14391 -11.94019 -11.86925 -11.73693 -11.37880 -11.31928 -11.18921 -10.78210 -10.63432 -10.47471 -10.27509 -9.70390 -8.64526 -8.08098 -5.41883 0.55369 1.04445 1.28998 1.39757 1.41021 1.47663 1.73502 1.98305 2.48450 2.75167 3.10569 3.28890 3.36446 3.57272 3.74033 3.76650 3.93813 4.03345 4.11485 4.20944 4.22770 4.29098 4.44941 4.49041 4.56794 4.62647 4.64537 4.70939 4.75570 4.80485 4.82443 4.88182 4.91831 5.03505 5.15186 5.19249 5.42859 5.55423 5.60054 5.64573 6.05757 6.28758 6.31427 6.44540 6.99381 7.10422 7.25210 7.57482 7.77882 8.15381 9.12973 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.002976 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.215931 B = 9405.679276 C = 9751.320299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.024 4.024 3 Si 0.930 3.070 4 H -0.284 1.284 5 H -0.324 1.324 6 H -0.252 1.252 7 C -0.207 4.207 8 H 0.037 0.963 9 N -0.604 5.604 10 C 0.117 3.883 11 C 0.066 3.934 12 O -0.579 6.579 13 C 0.173 3.827 14 C -0.134 4.134 15 C 0.124 3.876 16 N -0.598 5.598 17 C 0.492 3.508 18 O -0.585 6.585 19 C 0.092 3.908 20 N -0.471 5.471 21 C 0.192 3.808 22 N -0.328 5.328 23 N -0.335 5.335 24 C 0.357 3.643 25 O -0.448 6.448 26 C 0.111 3.889 27 C -0.133 4.133 28 H 0.253 0.747 29 H 0.029 0.971 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.377 0.623 34 H 0.091 0.909 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.147 0.853 40 H 0.190 0.810 41 H 0.274 0.726 42 H 0.428 0.572 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.033 0.967 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.881 -15.539 -6.504 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.219 4.219 3 Si 0.761 3.239 4 H -0.211 1.211 5 H -0.254 1.254 6 H -0.176 1.176 7 C -0.337 4.337 8 H 0.054 0.946 9 N -0.325 5.325 10 C -0.008 4.008 11 C -0.014 4.014 12 O -0.385 6.385 13 C 0.067 3.933 14 C -0.174 4.174 15 C 0.001 3.999 16 N -0.330 5.330 17 C 0.280 3.720 18 O -0.465 6.465 19 C -0.033 4.033 20 N -0.174 5.174 21 C -0.095 4.095 22 N -0.167 5.167 23 N -0.185 5.185 24 C 0.051 3.949 25 O -0.251 6.251 26 C -0.011 4.011 27 C -0.173 4.173 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.223 0.777 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.165 0.835 40 H 0.207 0.793 41 H 0.290 0.710 42 H 0.289 0.711 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.052 0.948 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.841 -15.055 -3.800 22.907 hybrid contribution -1.057 1.808 -1.609 2.641 sum 15.784 -13.247 -5.410 21.305 Atomic orbital electron populations 1.70013 1.07731 1.26389 1.56058 1.25931 0.95366 1.00600 1.00006 0.86058 0.79782 0.81570 0.76443 1.21147 1.25368 1.17637 1.18257 0.87877 0.91882 1.35733 0.94562 1.44225 1.06890 1.50723 1.30696 1.21527 0.98580 0.93613 0.87069 1.22850 0.82549 0.98985 0.97022 1.86865 1.26458 1.76284 1.48868 1.20632 0.92104 0.90137 0.90423 1.22241 0.97913 0.98813 0.98449 1.21536 0.98101 0.79545 1.00749 1.48207 1.67230 1.09926 1.07635 1.21242 0.77092 0.89398 0.84270 1.90782 1.52268 1.78300 1.25190 1.22176 1.09766 0.88662 0.82666 1.46652 1.12788 1.39734 1.18197 1.27316 0.96922 0.93563 0.91746 1.74086 1.03261 1.23078 1.16288 1.74488 1.08038 1.15141 1.20876 1.22250 0.86360 0.97534 0.88756 1.84961 1.16986 1.42311 1.80857 1.22253 1.00230 0.98680 0.79894 1.22281 0.98171 0.95719 1.01141 0.93809 0.95324 0.89736 0.93024 0.92178 0.77666 0.89150 0.95202 0.92511 0.91979 0.88262 0.83495 0.79335 0.71044 0.71096 0.87123 0.86515 0.94817 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 2 C -0.02 -1.41 5.28 84.86 0.45 -0.96 16 3 Si 0.93 46.31 25.06 68.60 1.72 48.03 16 4 H -0.28 -13.67 6.67 99.48 0.66 -13.01 16 5 H -0.32 -16.98 7.11 99.48 0.71 -16.27 16 6 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.21 -10.94 8.42 84.03 0.71 -10.24 16 8 H 0.04 2.18 7.04 -2.91 -0.02 2.16 16 9 N -0.60 -24.27 1.99 -677.90 -1.35 -25.61 16 10 C 0.12 4.27 4.72 86.38 0.41 4.68 16 11 C 0.07 1.94 7.38 71.98 0.53 2.47 16 12 O -0.58 -21.39 13.36 -148.98 -1.99 -23.38 16 13 C 0.17 5.08 2.59 45.02 0.12 5.20 16 14 C -0.13 -4.33 5.31 30.67 0.16 -4.17 16 15 C 0.12 3.04 6.43 86.36 0.56 3.60 16 16 N -0.60 -11.79 2.97 -818.07 -2.43 -14.22 16 17 C 0.49 10.83 7.77 87.65 0.68 11.51 16 18 O -0.59 -19.91 15.84 -3.04 -0.05 -19.96 16 19 C 0.09 1.01 5.04 85.63 0.43 1.44 16 20 N -0.47 -8.72 2.29 -647.67 -1.48 -10.20 16 21 C 0.19 3.36 12.80 179.80 2.30 5.66 16 22 N -0.33 -9.01 12.18 -59.40 -0.72 -9.74 16 23 N -0.34 -10.52 12.22 -173.67 -2.12 -12.64 16 24 C 0.36 9.31 9.22 179.70 1.66 10.97 16 25 O -0.45 -10.63 13.62 -88.38 -1.20 -11.84 16 26 C 0.11 1.36 6.37 86.51 0.55 1.91 16 27 C -0.13 -3.19 5.32 30.82 0.16 -3.02 16 28 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.03 1.27 3.46 -2.39 -0.01 1.26 16 30 H 0.08 2.46 8.00 -2.39 -0.02 2.45 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.38 9.47 9.12 -74.06 -0.68 8.80 16 34 H 0.09 2.03 7.84 -2.39 -0.02 2.01 16 35 H 0.03 1.23 7.71 -2.39 -0.02 1.21 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.87 7.01 -2.38 -0.02 1.85 16 38 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.15 1.07 7.70 -2.39 -0.02 1.05 16 40 H 0.19 -0.15 7.93 -2.38 -0.02 -0.17 16 41 H 0.27 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.43 4.74 9.06 -74.06 -0.67 4.07 16 43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.12 0.53 5.94 -2.39 -0.01 0.52 16 45 H 0.03 1.09 7.06 -2.39 -0.02 1.07 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -98.89 374.10 -0.96 -99.85 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.35 Total: 11.21 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 8.71 Total: 29.04 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -7.80 Total: -132.95 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -3.24 Total: -55.17 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.72 Total: 48.03 kcal Total: -98.89 -0.96 -99.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098351556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.217 kcal (2) G-P(sol) polarization free energy of solvation -98.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds