Wall clock time and date at job start Sat Apr 11 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00514 * 2 1 4 4 H 1.48495 * 109.47496 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47026 * 300.00308 * 3 2 1 6 6 H 1.48500 * 109.47186 * 59.99776 * 3 2 1 7 7 C 1.38816 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 164.51221 * 7 2 1 9 9 N 1.36939 * 119.99759 * 344.51687 * 7 2 1 10 10 C 1.47007 * 121.37534 * 335.97104 * 9 7 2 11 11 C 1.50324 * 109.16663 * 222.97184 * 10 9 7 12 12 C 1.29451 * 123.64972 * 349.01753 * 11 10 9 13 13 C 1.50698 * 117.69730 * 180.86139 * 12 11 10 14 14 C 1.53005 * 109.47023 * 94.99697 * 13 12 11 15 15 N 1.46503 * 109.47162 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00230 * 180.02562 * 15 14 13 17 17 O 1.21774 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.46209 * 120.00257 * 180.02562 * 16 15 14 19 19 C 1.41739 * 126.79686 * 359.68902 * 18 16 15 20 20 C 1.34519 * 107.77468 * 179.82943 * 19 18 16 21 21 N 1.36951 * 109.60602 * 0.44348 * 20 19 18 22 22 C 1.36710 * 131.35663 * 179.65937 * 21 20 19 23 23 C 1.35001 * 120.75568 * 180.02562 * 22 21 20 24 24 C 1.40308 * 120.38152 * 0.03905 * 23 22 21 25 25 C 1.36340 * 119.45785 * 359.97438 * 24 23 22 26 26 C 1.36946 * 108.73903 * 359.71565 * 21 20 19 27 27 C 1.49973 * 124.61134 * 1.14084 * 12 11 10 28 28 C 1.47342 * 121.37733 * 155.98886 * 9 7 2 29 29 H 0.96999 * 119.99656 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.52571 * 103.05911 * 10 9 7 31 31 H 1.09002 * 109.52271 * 342.87311 * 10 9 7 32 32 H 1.07992 * 118.17593 * 169.00237 * 11 10 9 33 33 H 1.08999 * 109.46997 * 335.00131 * 13 12 11 34 34 H 1.08999 * 109.47278 * 214.99902 * 13 12 11 35 35 H 1.08999 * 109.46879 * 60.00362 * 14 13 12 36 36 H 1.08999 * 109.47261 * 300.00216 * 14 13 12 37 37 H 0.97006 * 119.99803 * 0.02562 * 15 14 13 38 38 H 1.07998 * 126.11401 * 359.97438 * 19 18 16 39 39 H 1.08003 * 125.20159 * 180.15853 * 20 19 18 40 40 H 1.07998 * 119.61686 * 0.05840 * 22 21 20 41 41 H 1.07998 * 119.80538 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.27337 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.34312 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.31576 * 101.00828 * 27 12 11 45 45 H 1.09001 * 109.31543 * 220.43732 * 27 12 11 46 46 H 1.08991 * 109.77797 * 237.78928 * 28 9 7 47 47 H 1.09003 * 109.77650 * 358.60174 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2492 9 7 1.3628 -2.3664 0.3177 10 6 0.1444 -2.3651 1.1401 11 6 0.2246 -3.4820 2.1429 12 6 1.1202 -4.4160 2.1063 13 6 1.0638 -5.4827 3.1693 14 6 0.2869 -6.6897 2.6398 15 7 0.2315 -7.7265 3.6734 16 6 -0.4065 -8.8882 3.4291 17 8 -0.9365 -9.0763 2.3491 18 6 -0.4622 -9.9227 4.4609 19 6 0.1061 -9.8597 5.7578 20 6 -0.1777 -11.0144 6.3870 21 7 -0.8966 -11.8279 5.5522 22 6 -1.4035 -13.0848 5.7318 23 6 -2.0917 -13.6990 4.7461 24 6 -2.2977 -13.0549 3.5167 25 6 -1.7973 -11.8013 3.3244 26 6 -1.0851 -11.1795 4.3608 27 6 2.2137 -4.5079 1.0840 28 6 1.8588 -3.6723 -0.1511 29 1 -0.4849 0.8401 0.0004 30 1 -0.7266 -2.5109 0.5012 31 1 0.0585 -1.4122 1.6625 32 1 -0.5055 -3.5066 2.9383 33 1 0.5635 -5.0881 4.0537 34 1 2.0767 -5.7888 3.4310 35 1 0.7872 -7.0843 1.7554 36 1 -0.7260 -6.3836 2.3781 37 1 0.6541 -7.5768 4.5337 38 1 0.6649 -9.0318 6.1684 39 1 0.1202 -11.2638 7.3947 40 1 -1.2521 -13.5919 6.6732 41 1 -2.4858 -14.6919 4.9047 42 1 -2.8482 -13.5480 2.7292 43 1 -1.9470 -11.2924 2.3836 44 1 3.1440 -4.1406 1.5172 45 1 2.3436 -5.5488 0.7876 46 1 1.0845 -4.1744 -0.7309 47 1 2.7475 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160641462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:11 Heat of formation + Delta-G solvation = 75.058641 kcal Electronic energy + Delta-G solvation = -27590.983700 eV Core-core repulsion = 23740.470715 eV Total energy + Delta-G solvation = -3850.512984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62540 -39.32974 -37.80245 -36.93842 -35.27047 -33.48965 -33.27922 -31.36850 -30.41722 -29.77488 -28.97810 -27.96181 -25.39465 -24.08118 -23.62586 -22.73226 -22.15637 -21.82482 -20.86245 -20.07157 -18.22041 -17.54717 -17.00694 -16.36269 -16.10259 -15.93883 -15.80073 -15.44729 -15.20801 -14.87647 -14.72712 -14.16693 -13.84752 -13.80635 -13.51968 -13.33509 -13.20652 -13.09176 -12.56244 -12.26393 -12.12358 -12.00581 -11.89603 -11.74322 -11.50111 -11.33638 -10.92889 -10.87150 -10.69894 -10.68323 -10.24864 -10.20101 -9.87478 -9.75545 -9.47195 -9.09789 -8.95931 -8.60837 -7.85142 -7.72200 -6.67078 -5.73902 -3.12401 0.35699 0.85030 2.05151 2.22392 2.94296 2.97377 3.40501 3.42389 3.48054 3.50421 3.58626 4.05941 4.36173 4.41913 4.52848 4.53912 4.69800 4.83712 5.03106 5.21633 5.29096 5.30403 5.34542 5.42132 5.44262 5.47084 5.64308 5.73870 5.77644 5.86906 5.90767 5.96140 6.11387 6.15387 6.25084 6.29600 6.31105 6.46622 6.47758 6.55395 6.62523 6.81087 6.85737 6.97469 7.30481 7.39519 7.47727 7.62087 7.80572 7.95278 8.36146 8.44296 9.25793 9.88815 10.47740 11.36458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.001713 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.734715 B =16346.166900 C =16630.584217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.091 4.091 14 C 0.127 3.873 15 N -0.726 5.726 16 C 0.589 3.411 17 O -0.553 6.553 18 C -0.239 4.239 19 C -0.106 4.106 20 C -0.065 4.065 21 N -0.339 5.339 22 C 0.045 3.955 23 C -0.141 4.141 24 C -0.119 4.119 25 C -0.079 4.079 26 C 0.112 3.888 27 C -0.091 4.091 28 C 0.143 3.857 29 H 0.253 0.747 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.157 0.843 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.024 0.976 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -28.242 15.613 32.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.167 4.167 12 C -0.142 4.142 13 C -0.129 4.129 14 C 0.004 3.996 15 N -0.377 5.377 16 C 0.378 3.622 17 O -0.433 6.433 18 C -0.249 4.249 19 C -0.128 4.128 20 C -0.190 4.190 21 N -0.003 5.003 22 C -0.076 4.076 23 C -0.161 4.161 24 C -0.140 4.140 25 C -0.098 4.098 26 C 0.003 3.997 27 C -0.130 4.130 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.181 0.819 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.175 0.825 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.755 -28.374 14.983 32.205 hybrid contribution 0.572 0.884 0.718 1.275 sum -2.183 -27.490 15.701 31.733 Atomic orbital electron populations 1.70031 1.05159 1.25279 1.55008 1.24989 0.95385 0.98251 1.01446 0.86191 0.79232 0.83985 0.77210 1.20342 1.21798 1.21657 1.19233 0.92210 0.84416 1.41408 0.91375 1.44145 1.29275 1.01148 1.57339 1.19702 0.88618 0.94770 0.89765 1.23106 0.96743 0.97399 0.99453 1.20235 0.99257 0.96548 0.98202 1.20908 0.99983 0.94203 0.97832 1.21399 1.01106 0.86595 0.90487 1.45825 1.57100 1.16444 1.18319 1.16991 0.77950 0.81098 0.86158 1.90789 1.47017 1.80086 1.25381 1.19392 1.12793 0.95606 0.97096 1.21045 1.00806 0.97644 0.93267 1.21677 1.06797 0.92519 0.98017 1.41543 1.34979 1.11466 1.12284 1.21691 0.99686 0.84506 1.01735 1.20812 1.00659 1.01334 0.93304 1.21165 1.00367 0.94927 0.97569 1.20943 0.95428 0.94760 0.98633 1.18661 1.01708 0.92807 0.86571 1.20791 0.96540 0.99024 0.96651 1.20995 0.97298 0.87215 0.92868 0.93724 0.94445 0.89202 0.89081 0.91588 0.91518 0.91335 0.91356 0.76910 0.82883 0.80960 0.81915 0.83437 0.84349 0.82537 0.91952 0.92876 0.95769 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 11.08 55.49 0.61 -26.15 16 2 C 0.00 -0.09 5.01 -17.43 -0.09 -0.17 16 3 Si 0.90 22.03 29.58 -169.99 -5.03 17.00 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.81 9.71 -15.06 -0.15 -6.96 16 8 H 0.07 1.87 7.88 -52.49 -0.41 1.45 16 9 N -0.60 -15.39 3.01 -173.56 -0.52 -15.91 16 10 C 0.20 4.84 5.23 -5.10 -0.03 4.82 16 11 C -0.15 -2.94 9.47 -35.78 -0.34 -3.28 16 12 C -0.14 -2.52 5.11 -100.99 -0.52 -3.03 16 13 C -0.09 -1.24 5.32 -27.88 -0.15 -1.39 16 14 C 0.13 1.78 5.66 -4.04 -0.02 1.75 16 15 N -0.73 -8.83 5.55 -61.76 -0.34 -9.17 16 16 C 0.59 8.40 7.77 -13.06 -0.10 8.30 16 17 O -0.55 -9.78 15.66 5.12 0.08 -9.70 16 18 C -0.24 -2.87 6.20 -104.46 -0.65 -3.52 16 19 C -0.11 -0.92 10.27 -39.56 -0.41 -1.32 16 20 C -0.07 -0.49 11.53 -16.58 -0.19 -0.68 16 21 N -0.34 -2.96 2.92 -60.81 -0.18 -3.14 16 22 C 0.04 0.26 10.89 -16.53 -0.18 0.08 16 23 C -0.14 -0.77 9.98 -39.95 -0.40 -1.16 16 24 C -0.12 -0.86 10.09 -39.49 -0.40 -1.26 16 25 C -0.08 -0.82 9.72 -39.50 -0.38 -1.20 16 26 C 0.11 1.28 6.70 -83.91 -0.56 0.72 16 27 C -0.09 -1.66 5.95 -28.08 -0.17 -1.82 16 28 C 0.14 3.10 6.59 -3.43 -0.02 3.07 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 32 H 0.09 1.62 7.73 -52.49 -0.41 1.21 16 33 H 0.07 0.84 7.78 -51.93 -0.40 0.43 16 34 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.40 3.63 7.44 -40.82 -0.30 3.33 16 38 H 0.15 0.89 7.53 -52.49 -0.40 0.50 16 39 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.16 1.79 7.07 -52.48 -0.37 1.42 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -34.93 387.51 -11.10 -46.03 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.82 Total: 2.26 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -4.74 Total: -7.06 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.43 Total: -54.37 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.93 -11.10 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160641462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.084 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds