Wall clock time and date at job start Sat Apr 11 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00514 * 2 1 4 4 H 1.48495 * 109.47496 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47026 * 300.00308 * 3 2 1 6 6 H 1.48500 * 109.47186 * 59.99776 * 3 2 1 7 7 C 1.38816 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 164.51221 * 7 2 1 9 9 N 1.36939 * 119.99759 * 344.51687 * 7 2 1 10 10 C 1.47007 * 121.37534 * 335.97104 * 9 7 2 11 11 C 1.50324 * 109.16663 * 222.97184 * 10 9 7 12 12 C 1.29451 * 123.64972 * 349.01753 * 11 10 9 13 13 C 1.50698 * 117.69730 * 180.86139 * 12 11 10 14 14 C 1.53005 * 109.47023 * 94.99697 * 13 12 11 15 15 N 1.46503 * 109.47162 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00230 * 180.02562 * 15 14 13 17 17 O 1.21774 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.46209 * 120.00257 * 180.02562 * 16 15 14 19 19 C 1.41739 * 126.79686 * 359.68902 * 18 16 15 20 20 C 1.34519 * 107.77468 * 179.82943 * 19 18 16 21 21 N 1.36951 * 109.60602 * 0.44348 * 20 19 18 22 22 C 1.36710 * 131.35663 * 179.65937 * 21 20 19 23 23 C 1.35001 * 120.75568 * 180.02562 * 22 21 20 24 24 C 1.40308 * 120.38152 * 0.03905 * 23 22 21 25 25 C 1.36340 * 119.45785 * 359.97438 * 24 23 22 26 26 C 1.36946 * 108.73903 * 359.71565 * 21 20 19 27 27 C 1.49973 * 124.61134 * 1.14084 * 12 11 10 28 28 C 1.47342 * 121.37733 * 155.98886 * 9 7 2 29 29 H 0.96999 * 119.99656 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.52571 * 103.05911 * 10 9 7 31 31 H 1.09002 * 109.52271 * 342.87311 * 10 9 7 32 32 H 1.07992 * 118.17593 * 169.00237 * 11 10 9 33 33 H 1.08999 * 109.46997 * 335.00131 * 13 12 11 34 34 H 1.08999 * 109.47278 * 214.99902 * 13 12 11 35 35 H 1.08999 * 109.46879 * 60.00362 * 14 13 12 36 36 H 1.08999 * 109.47261 * 300.00216 * 14 13 12 37 37 H 0.97006 * 119.99803 * 0.02562 * 15 14 13 38 38 H 1.07998 * 126.11401 * 359.97438 * 19 18 16 39 39 H 1.08003 * 125.20159 * 180.15853 * 20 19 18 40 40 H 1.07998 * 119.61686 * 0.05840 * 22 21 20 41 41 H 1.07998 * 119.80538 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.27337 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.34312 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.31576 * 101.00828 * 27 12 11 45 45 H 1.09001 * 109.31543 * 220.43732 * 27 12 11 46 46 H 1.08991 * 109.77797 * 237.78928 * 28 9 7 47 47 H 1.09003 * 109.77650 * 358.60174 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2492 9 7 1.3628 -2.3664 0.3177 10 6 0.1444 -2.3651 1.1401 11 6 0.2246 -3.4820 2.1429 12 6 1.1202 -4.4160 2.1063 13 6 1.0638 -5.4827 3.1693 14 6 0.2869 -6.6897 2.6398 15 7 0.2315 -7.7265 3.6734 16 6 -0.4065 -8.8882 3.4291 17 8 -0.9365 -9.0763 2.3491 18 6 -0.4622 -9.9227 4.4609 19 6 0.1061 -9.8597 5.7578 20 6 -0.1777 -11.0144 6.3870 21 7 -0.8966 -11.8279 5.5522 22 6 -1.4035 -13.0848 5.7318 23 6 -2.0917 -13.6990 4.7461 24 6 -2.2977 -13.0549 3.5167 25 6 -1.7973 -11.8013 3.3244 26 6 -1.0851 -11.1795 4.3608 27 6 2.2137 -4.5079 1.0840 28 6 1.8588 -3.6723 -0.1511 29 1 -0.4849 0.8401 0.0004 30 1 -0.7266 -2.5109 0.5012 31 1 0.0585 -1.4122 1.6625 32 1 -0.5055 -3.5066 2.9383 33 1 0.5635 -5.0881 4.0537 34 1 2.0767 -5.7888 3.4310 35 1 0.7872 -7.0843 1.7554 36 1 -0.7260 -6.3836 2.3781 37 1 0.6541 -7.5768 4.5337 38 1 0.6649 -9.0318 6.1684 39 1 0.1202 -11.2638 7.3947 40 1 -1.2521 -13.5919 6.6732 41 1 -2.4858 -14.6919 4.9047 42 1 -2.8482 -13.5480 2.7292 43 1 -1.9470 -11.2924 2.3836 44 1 3.1440 -4.1406 1.5172 45 1 2.3436 -5.5488 0.7876 46 1 1.0845 -4.1744 -0.7309 47 1 2.7475 -3.5301 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160641462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:10 Heat of formation + Delta-G solvation = 54.374656 kcal Electronic energy + Delta-G solvation = -27591.880625 eV Core-core repulsion = 23740.470715 eV Total energy + Delta-G solvation = -3851.409909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.22642 -40.40436 -39.40751 -37.50918 -36.67684 -35.05371 -33.97449 -33.12856 -31.51534 -31.04935 -30.25056 -28.87628 -27.08268 -25.02850 -24.56552 -24.28573 -23.43096 -22.52348 -22.30520 -21.02686 -19.46093 -18.90332 -17.72861 -17.54620 -17.09305 -16.95545 -16.71805 -16.67359 -16.30280 -16.15661 -15.73193 -15.39862 -15.34901 -15.19880 -14.81296 -14.72130 -14.27844 -14.02196 -13.84968 -13.64856 -13.35890 -13.20096 -12.87454 -12.80798 -12.76796 -12.59798 -12.53392 -12.35251 -12.26906 -12.12325 -11.88229 -11.66605 -11.37691 -11.24980 -10.92431 -10.69130 -10.08022 -9.64688 -9.48301 -8.75208 -8.35743 -7.87720 -5.30123 -0.24529 0.25138 1.34496 1.42009 1.46652 1.47328 1.58761 1.67857 2.34927 2.43143 2.51241 2.72285 3.28912 3.59543 3.67029 3.84201 3.94954 3.97021 3.99328 4.05469 4.13635 4.17663 4.26639 4.31128 4.48993 4.56443 4.60077 4.69677 4.77633 4.85238 4.87334 4.91191 4.94127 4.98825 5.11259 5.17968 5.23482 5.24213 5.31039 5.36676 5.41926 5.49719 5.50486 5.61252 5.68554 5.85651 5.88736 6.28890 6.30853 6.33840 6.69757 7.13165 7.37170 7.83122 8.38583 9.21146 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.001713 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.734715 B =16346.166900 C =16630.584217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.207 3.793 11 C -0.175 4.175 12 C -0.120 4.120 13 C -0.077 4.077 14 C 0.136 3.864 15 N -0.713 5.713 16 C 0.582 3.418 17 O -0.603 6.603 18 C -0.286 4.286 19 C -0.109 4.109 20 C -0.060 4.060 21 N -0.343 5.343 22 C 0.050 3.950 23 C -0.147 4.147 24 C -0.098 4.098 25 C -0.130 4.130 26 C 0.093 3.907 27 C -0.087 4.087 28 C 0.135 3.865 29 H 0.249 0.751 30 H 0.002 0.998 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.414 0.586 38 H 0.179 0.821 39 H 0.214 0.786 40 H 0.208 0.792 41 H 0.188 0.812 42 H 0.159 0.841 43 H 0.128 0.872 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.017 0.983 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -31.309 19.092 36.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.194 4.194 12 C -0.121 4.121 13 C -0.114 4.114 14 C 0.012 3.988 15 N -0.364 5.364 16 C 0.374 3.626 17 O -0.487 6.487 18 C -0.295 4.295 19 C -0.130 4.130 20 C -0.183 4.183 21 N -0.006 5.006 22 C -0.070 4.070 23 C -0.166 4.166 24 C -0.119 4.119 25 C -0.149 4.149 26 C -0.018 4.018 27 C -0.125 4.125 28 C 0.010 3.990 29 H 0.058 0.942 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.251 0.749 38 H 0.196 0.804 39 H 0.231 0.769 40 H 0.225 0.775 41 H 0.205 0.795 42 H 0.176 0.824 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.035 0.965 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.108 -31.457 18.507 36.514 hybrid contribution 0.036 1.601 -0.388 1.647 sum -1.072 -29.856 18.119 34.940 Atomic orbital electron populations 1.70211 1.06707 1.25718 1.56303 1.25822 0.96200 1.01581 1.01674 0.85123 0.78556 0.79549 0.76732 1.18898 1.21979 1.21652 1.19594 0.92593 0.85567 1.40894 0.91015 1.44433 1.29416 1.02085 1.57944 1.19352 0.87283 0.95252 0.89963 1.22819 0.99400 0.97229 0.99947 1.20581 0.97195 0.96163 0.98144 1.20795 1.01713 0.92267 0.96668 1.21125 0.99721 0.87147 0.90774 1.45599 1.56781 1.15437 1.18607 1.17471 0.77194 0.81836 0.86133 1.90750 1.49283 1.81096 1.27536 1.19361 1.16045 0.95853 0.98260 1.21386 1.00633 0.99126 0.91817 1.22350 1.05273 0.91660 0.99057 1.41847 1.34962 1.12397 1.11431 1.22577 0.97800 0.83218 1.03440 1.21311 1.00411 1.02827 0.92101 1.21563 0.97917 0.93403 0.99002 1.20840 0.99039 0.96713 0.98302 1.18831 1.01822 0.93227 0.87880 1.20748 0.96816 0.99967 0.95009 1.21191 0.97046 0.86067 0.94732 0.94158 0.98079 0.92587 0.86981 0.89784 0.88800 0.92596 0.93637 0.74891 0.80410 0.76927 0.77530 0.79485 0.82361 0.85419 0.91101 0.89804 0.96531 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 11.08 21.65 0.24 -57.66 16 2 C -0.06 -3.37 5.01 84.86 0.43 -2.95 16 3 Si 0.97 46.19 29.58 68.60 2.03 48.22 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.26 -14.67 9.71 84.03 0.82 -13.86 16 8 H 0.07 3.95 7.88 -2.91 -0.02 3.93 16 9 N -0.61 -32.72 3.01 -703.01 -2.11 -34.83 16 10 C 0.21 10.74 5.23 85.42 0.45 11.18 16 11 C -0.17 -7.05 9.47 27.11 0.26 -6.79 16 12 C -0.12 -4.12 5.11 -15.13 -0.08 -4.20 16 13 C -0.08 -1.90 5.32 29.85 0.16 -1.74 16 14 C 0.14 3.74 5.66 86.38 0.49 4.23 16 15 N -0.71 -16.97 5.55 -467.49 -2.59 -19.56 16 16 C 0.58 17.34 7.77 86.31 0.67 18.01 16 17 O -0.60 -23.13 15.66 -4.59 -0.07 -23.21 16 18 C -0.29 -6.95 6.20 -19.76 -0.12 -7.07 16 19 C -0.11 -1.67 10.27 22.28 0.23 -1.44 16 20 C -0.06 -0.69 11.53 83.04 0.96 0.26 16 21 N -0.34 -5.14 2.92 -346.29 -1.01 -6.16 16 22 C 0.05 0.39 10.89 83.19 0.91 1.30 16 23 C -0.15 -1.08 9.98 22.03 0.22 -0.86 16 24 C -0.10 -1.30 10.09 22.33 0.23 -1.08 16 25 C -0.13 -2.88 9.72 22.32 0.22 -2.66 16 26 C 0.09 2.15 6.70 39.43 0.26 2.41 16 27 C -0.09 -3.02 5.95 29.72 0.18 -2.85 16 28 C 0.13 5.91 6.59 86.32 0.57 6.48 16 29 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.06 3.23 6.41 -2.39 -0.02 3.22 16 32 H 0.11 3.99 7.73 -2.91 -0.02 3.96 16 33 H 0.08 1.86 7.78 -2.39 -0.02 1.84 16 34 H 0.09 1.91 8.11 -2.39 -0.02 1.89 16 35 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 6.77 7.44 -92.70 -0.69 6.08 16 38 H 0.18 1.55 7.53 -2.91 -0.02 1.52 16 39 H 0.21 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.21 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 42 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.13 3.43 7.07 -2.91 -0.02 3.41 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.53 7.96 -2.39 -0.02 2.51 16 Total: -1.00 -83.27 387.51 3.59 -79.67 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.29 Total: 15.14 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 6.83 Total: -1.61 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -5.48 Total: -118.21 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -83.27 3.59 -79.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160641462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.048 kcal (2) G-P(sol) polarization free energy of solvation -83.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds