Wall clock time and date at job start Sat Apr 11 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47335 * 275.89066 * 3 2 1 5 5 H 1.48504 * 109.47042 * 35.89082 * 3 2 1 6 6 H 1.48502 * 109.47169 * 155.88926 * 3 2 1 7 7 C 1.39948 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00193 * 22.49498 * 7 2 1 9 9 C 1.41020 * 120.00229 * 202.50671 * 7 2 1 10 10 C 1.41004 * 120.70188 * 42.42002 * 9 7 2 11 11 C 1.38015 * 118.27906 * 180.25143 * 10 9 7 12 12 C 1.38682 * 119.62358 * 359.74695 * 11 10 9 13 13 N 1.31974 * 121.45179 * 359.97438 * 12 11 10 14 14 C 1.32269 * 121.86223 * 0.02562 * 13 12 11 15 15 N 1.38088 * 119.90415 * 179.97438 * 14 13 12 16 16 C 1.46899 * 111.00022 * 259.49924 * 15 14 13 17 17 C 1.50701 * 109.47536 * 205.85980 * 16 15 14 18 18 C 1.38230 * 120.00205 * 247.52874 * 17 16 15 19 19 C 1.38239 * 119.99840 * 179.76205 * 18 17 16 20 20 C 1.38229 * 120.00091 * 0.50798 * 19 18 17 21 21 C 1.38244 * 120.00050 * 359.74480 * 20 19 18 22 22 C 1.38235 * 119.99580 * 67.79701 * 17 16 15 23 23 C 1.46897 * 111.00190 * 23.45384 * 15 14 13 24 24 C 1.52998 * 112.99876 * 54.91627 * 23 15 14 25 25 N 1.46897 * 109.47132 * 50.05559 * 24 23 15 26 26 C 1.54038 * 113.81718 * 186.74590 * 23 15 14 27 27 O 1.44440 * 85.42654 * 91.80737 * 26 23 15 28 28 C 1.44174 * 93.38254 * 24.08983 * 27 26 23 29 29 H 0.97006 * 120.00343 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.86767 * 359.97097 * 10 9 7 31 31 H 1.07997 * 120.18815 * 179.72790 * 11 10 9 32 32 H 1.08002 * 119.27761 * 180.02562 * 12 11 10 33 33 H 1.09006 * 109.47175 * 325.86278 * 16 15 14 34 34 H 1.08999 * 109.47033 * 85.86019 * 16 15 14 35 35 H 1.08000 * 119.99924 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.99884 * 180.22531 * 19 18 17 37 37 H 1.07999 * 120.00298 * 179.72320 * 20 19 18 38 38 H 1.07997 * 120.00128 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00547 * 0.02562 * 22 17 16 40 40 H 1.09005 * 109.47190 * 170.05677 * 24 23 15 41 41 H 1.09001 * 109.46847 * 290.05527 * 24 23 15 42 42 H 1.00898 * 110.99784 * 183.96475 * 25 24 23 43 43 H 1.00902 * 110.99832 * 307.92068 * 25 24 23 44 44 H 1.09006 * 113.86190 * 205.91265 * 26 23 15 45 45 H 1.08998 * 113.86423 * 337.61745 * 26 23 15 46 46 H 1.08999 * 113.86649 * 221.77201 * 28 27 26 47 47 H 1.08998 * 113.87241 * 90.05972 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3658 2.1183 -1.3927 5 1 1.5078 2.6135 0.8208 6 1 3.5969 1.4074 0.5719 7 6 2.0084 -1.2120 -0.0005 8 1 1.5301 -2.1116 -0.3588 9 6 3.3381 -1.2587 0.4669 10 6 3.7163 -0.5616 1.6327 11 6 5.0320 -0.6377 2.0423 12 6 5.9356 -1.3924 1.3092 13 7 5.5664 -2.0445 0.2228 14 6 4.3211 -2.0119 -0.2218 15 7 3.9794 -2.7093 -1.3636 16 6 3.9089 -1.8138 -2.5260 17 6 2.9695 -2.3946 -3.5514 18 6 3.4607 -2.8432 -4.7631 19 6 2.5997 -3.3805 -5.7017 20 6 1.2461 -3.4595 -5.4327 21 6 0.7541 -3.0061 -4.2229 22 6 1.6159 -2.4737 -3.2823 23 6 4.9167 -3.8140 -1.6062 24 6 5.0463 -4.7612 -0.4117 25 7 3.7082 -5.1623 0.0427 26 6 4.6952 -4.5339 -2.9498 27 8 5.6569 -3.5952 -3.4793 28 6 6.2681 -3.3655 -2.1939 29 1 -0.4851 0.8401 0.0004 30 1 2.9961 0.0207 2.1883 31 1 5.3563 -0.1123 2.9284 32 1 6.9638 -1.4484 1.6350 33 1 3.5430 -0.8367 -2.2103 34 1 4.9018 -1.7063 -2.9625 35 1 4.5176 -2.7771 -4.9751 36 1 2.9839 -3.7343 -6.6469 37 1 0.5728 -3.8751 -6.1677 38 1 -0.3034 -3.0674 -4.0129 39 1 1.2315 -2.1188 -2.3375 40 1 5.6095 -5.6459 -0.7089 41 1 5.5684 -4.2537 0.3995 42 1 3.7644 -5.7364 0.8705 43 1 3.1232 -4.3556 0.2011 44 1 5.0385 -5.5685 -2.9576 45 1 3.6903 -4.4133 -3.3544 46 1 6.5079 -2.3200 -2.0001 47 1 7.0926 -4.0423 -1.9702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167365146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:49 Heat of formation + Delta-G solvation = 87.094564 kcal Electronic energy + Delta-G solvation = -31809.400110 eV Core-core repulsion = 27959.409042 eV Total energy + Delta-G solvation = -3849.991068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.24393 -38.70716 -38.39636 -35.28886 -34.09111 -33.62979 -31.50695 -31.13591 -30.31614 -29.45564 -28.05272 -26.10255 -25.76071 -24.50207 -23.31063 -22.22880 -21.92646 -20.97896 -20.66456 -18.69291 -17.58379 -16.50855 -16.41542 -16.15610 -15.82354 -15.32315 -15.11833 -14.86666 -14.62468 -14.28380 -14.09929 -13.88932 -13.73278 -13.48255 -13.29814 -12.88540 -12.77652 -12.45804 -12.26595 -12.16396 -12.00757 -11.89939 -11.73637 -11.45014 -11.17718 -11.07037 -10.69758 -10.59165 -10.47250 -10.38494 -10.04032 -9.95894 -9.48660 -9.40672 -8.67694 -8.41284 -8.31376 -8.24519 -8.03523 -7.92415 -7.23385 -7.04061 -4.56072 1.84189 1.98673 2.25242 2.48279 2.98163 3.07896 3.16913 3.87174 4.10511 4.13301 4.40816 4.48860 4.78217 5.12918 5.29727 5.32822 5.40591 5.46283 5.53766 5.56203 5.62867 5.67800 5.78491 5.93068 5.97965 6.04036 6.07541 6.13115 6.16039 6.22574 6.25510 6.32678 6.38838 6.47649 6.50278 6.57007 6.62913 6.66597 6.69044 6.94409 6.99766 7.11186 7.16790 7.30717 7.41571 7.54359 7.60136 7.63158 7.72273 8.00209 8.07021 8.30640 8.55879 8.65170 9.18860 9.95973 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009911 B = 0.006911 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.532626 B = 4050.661853 C = 5759.676945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.092 3.908 3 Si 0.863 3.137 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.429 4.429 8 H 0.107 0.893 9 C 0.055 3.945 10 C -0.163 4.163 11 C -0.149 4.149 12 C -0.016 4.016 13 N -0.491 5.491 14 C 0.187 3.813 15 N -0.417 5.417 16 C 0.097 3.903 17 C -0.067 4.067 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.086 4.086 23 C 0.078 3.922 24 C 0.077 3.923 25 N -0.843 5.843 26 C 0.038 3.962 27 O -0.386 6.386 28 C 0.021 3.979 29 H 0.284 0.716 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.327 0.673 43 H 0.358 0.642 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -4.079 -3.991 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.128 4.128 3 Si 0.687 3.313 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.151 1.151 7 C -0.458 4.458 8 H 0.124 0.876 9 C 0.049 3.951 10 C -0.189 4.189 11 C -0.169 4.169 12 C -0.173 4.173 13 N -0.203 5.203 14 C -0.046 4.046 15 N -0.135 5.135 16 C -0.029 4.029 17 C -0.068 4.068 18 C -0.126 4.126 19 C -0.159 4.159 20 C -0.147 4.147 21 C -0.149 4.149 22 C -0.104 4.104 23 C -0.014 4.014 24 C -0.054 4.054 25 N -0.374 5.374 26 C -0.038 4.038 27 O -0.305 6.305 28 C -0.058 4.058 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.160 0.840 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.138 0.862 43 H 0.173 0.827 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.114 0.886 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.986 -4.897 -5.341 8.796 hybrid contribution 0.557 2.087 1.523 2.643 sum 5.543 -2.810 -3.819 7.294 Atomic orbital electron populations 1.69748 1.07911 1.30130 1.34091 1.26010 0.94440 1.00956 0.91429 0.86845 0.83584 0.81194 0.79687 1.19572 1.20170 1.15130 1.19175 0.93816 0.96659 1.36166 0.87579 1.18088 0.93413 0.92690 0.90922 1.21434 0.95591 1.04953 0.96962 1.21542 0.94817 1.00324 1.00241 1.21533 0.98313 1.01798 0.95654 1.67120 1.18460 1.20066 1.14627 1.19618 0.87735 1.03233 0.94027 1.58972 1.44787 1.08481 1.01228 1.21112 0.97626 0.95549 0.88572 1.19767 0.94227 0.98531 0.94248 1.21356 1.00114 0.97736 0.93348 1.20985 0.93626 1.02021 0.99256 1.21032 0.95383 1.01061 0.97217 1.21139 0.99600 1.00008 0.94122 1.21480 0.92759 0.96440 0.99748 1.23650 0.90323 0.92233 0.95169 1.21743 0.91255 0.96047 0.96400 1.58728 1.12773 1.26614 1.39242 1.24465 0.95438 0.92735 0.91177 1.89602 1.50230 1.60943 1.29701 1.24489 0.96678 1.02481 0.82122 0.90498 0.87537 0.88040 0.86019 0.89776 0.92178 0.85173 0.87093 0.87196 0.86736 0.84036 0.92090 0.93673 0.86230 0.82686 0.90917 0.87210 0.88644 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.09 13.93 55.55 0.77 -18.32 16 2 C 0.09 2.12 5.32 -17.32 -0.09 2.03 16 3 Si 0.86 18.15 26.61 -169.99 -4.52 13.62 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.23 -4.86 5.33 56.52 0.30 -4.55 16 7 C -0.43 -9.93 7.49 -37.89 -0.28 -10.22 16 8 H 0.11 2.64 6.86 -52.48 -0.36 2.28 16 9 C 0.06 1.22 4.48 -106.47 -0.48 0.74 16 10 C -0.16 -3.46 6.79 -38.62 -0.26 -3.72 16 11 C -0.15 -2.86 10.08 -39.50 -0.40 -3.25 16 12 C -0.02 -0.30 11.17 -17.33 -0.19 -0.49 16 13 N -0.49 -9.66 6.07 -11.87 -0.07 -9.73 16 14 C 0.19 3.83 4.49 -155.03 -0.70 3.13 16 15 N -0.42 -7.83 3.18 -166.41 -0.53 -8.36 16 16 C 0.10 1.85 4.37 -4.98 -0.02 1.82 16 17 C -0.07 -1.20 3.65 -104.63 -0.38 -1.58 16 18 C -0.11 -1.74 6.62 -39.58 -0.26 -2.00 16 19 C -0.14 -2.07 10.05 -39.58 -0.40 -2.47 16 20 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 21 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 22 C -0.09 -1.59 9.70 -39.58 -0.38 -1.98 16 23 C 0.08 1.32 0.70 -130.52 -0.09 1.23 16 24 C 0.08 1.26 5.74 -3.83 -0.02 1.24 16 25 N -0.84 -14.01 9.65 -10.37 -0.10 -14.11 16 26 C 0.04 0.62 7.22 37.64 0.27 0.90 16 27 O -0.39 -6.39 8.05 -35.23 -0.28 -6.68 16 28 C 0.02 0.35 6.90 37.64 0.26 0.61 16 29 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 30 H 0.11 2.23 6.84 -52.49 -0.36 1.87 16 31 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.08 1.77 7.09 -51.93 -0.37 1.40 16 34 H 0.06 1.13 4.87 -51.93 -0.25 0.88 16 35 H 0.13 2.10 5.97 -52.49 -0.31 1.79 16 36 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.14 2.95 6.10 -52.49 -0.32 2.63 16 40 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 41 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 42 H 0.33 4.79 9.08 -39.29 -0.36 4.43 16 43 H 0.36 6.83 7.56 -39.29 -0.30 6.54 16 44 H 0.07 1.08 7.99 -51.93 -0.41 0.67 16 45 H 0.11 1.91 4.67 -51.93 -0.24 1.67 16 46 H 0.10 1.70 6.58 -51.93 -0.34 1.36 16 47 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -23.40 356.54 -9.73 -33.13 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -6.14 Total: 23.88 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -4.23 Total: -18.82 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.07 Total: -50.52 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.28 Total: -6.68 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.52 Total: 13.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -23.40 -9.73 -33.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167365146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.228 kcal (2) G-P(sol) polarization free energy of solvation -23.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds