Wall clock time and date at job start Sat Apr 11 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48502 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46929 * 299.99925 * 3 2 1 6 6 H 1.48495 * 109.47106 * 59.99755 * 3 2 1 7 7 C 1.40022 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 186.88316 * 7 2 1 9 9 C 1.41316 * 120.00259 * 6.88557 * 7 2 1 10 10 C 1.40588 * 119.78672 * 186.78513 * 9 7 2 11 11 C 1.38350 * 119.14706 * 179.70048 * 10 9 7 12 12 C 1.38633 * 118.67911 * 0.53479 * 11 10 9 13 13 C 1.39764 * 119.49129 * 359.46502 * 12 11 10 14 14 N 1.38831 * 119.58375 * 180.29711 * 13 12 11 15 15 C 1.46503 * 119.99852 * 10.05946 * 14 13 12 16 16 C 1.50697 * 109.47058 * 84.52948 * 15 14 13 17 17 C 1.38233 * 120.00367 * 275.38008 * 16 15 14 18 18 C 1.38239 * 120.00343 * 179.76563 * 17 16 15 19 19 C 1.38239 * 119.99581 * 0.51233 * 18 17 16 20 20 C 1.38237 * 120.00179 * 359.74082 * 19 18 17 21 21 C 1.38232 * 119.99800 * 0.02562 * 20 19 18 22 22 C 1.46491 * 120.00134 * 190.05841 * 14 13 12 23 23 C 1.53005 * 112.99802 * 64.70250 * 22 14 13 24 24 N 1.46906 * 109.46773 * 70.64786 * 23 22 14 25 25 C 1.54030 * 113.81945 * 292.88216 * 22 14 13 26 26 O 1.44569 * 85.38327 * 268.28847 * 25 22 14 27 27 C 1.44176 * 93.32902 * 335.80341 * 26 25 22 28 28 N 1.31978 * 120.83479 * 0.26828 * 13 12 11 29 29 H 0.96999 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.42660 * 359.97214 * 10 9 7 31 31 H 1.07995 * 120.65926 * 180.29204 * 11 10 9 32 32 H 1.07999 * 120.25535 * 179.73159 * 12 11 10 33 33 H 1.08996 * 109.47169 * 204.52855 * 15 14 13 34 34 H 1.09000 * 109.47398 * 324.53384 * 15 14 13 35 35 H 1.08002 * 119.99885 * 359.97438 * 17 16 15 36 36 H 1.07989 * 120.00175 * 180.22865 * 18 17 16 37 37 H 1.08005 * 119.99927 * 179.72613 * 19 18 17 38 38 H 1.07995 * 119.99579 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.99787 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47087 * 190.64187 * 23 22 14 41 41 H 1.08991 * 109.47245 * 310.64899 * 23 22 14 42 42 H 1.00893 * 110.99974 * 56.04621 * 24 23 22 43 43 H 1.00897 * 110.99740 * 179.97438 * 24 23 22 44 44 H 1.08999 * 113.86595 * 22.49228 * 25 22 14 45 45 H 1.09002 * 113.87117 * 154.20536 * 25 22 14 46 46 H 1.09006 * 113.86314 * 270.04749 * 27 26 25 47 47 H 1.08999 * 113.87075 * 138.33608 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0818 -1.2160 0.1116 9 6 1.3087 -2.4320 -0.1478 10 6 1.9939 -3.6513 -0.0051 11 6 1.2954 -4.8372 -0.1458 12 6 -0.0593 -4.7812 -0.4349 13 6 -0.6842 -3.5378 -0.5650 14 7 -2.0420 -3.4795 -0.8484 15 6 -2.8551 -4.6969 -0.7920 16 6 -3.2986 -4.9394 0.6277 17 6 -2.4659 -5.6046 1.5080 18 6 -2.8708 -5.8227 2.8116 19 6 -4.1128 -5.3850 3.2320 20 6 -4.9477 -4.7243 2.3503 21 6 -4.5408 -4.5020 1.0480 22 6 -2.6618 -2.2006 -1.2038 23 6 -2.1351 -1.6265 -2.5206 24 7 -2.6259 -2.4405 -3.6407 25 6 -2.6919 -1.1817 -0.0490 26 8 -3.9923 -1.7371 0.2519 27 6 -4.1985 -2.2031 -1.0968 28 7 0.0001 -2.4185 -0.4214 29 1 -0.4849 0.8401 0.0004 30 1 3.0510 -3.6621 0.2159 31 1 1.7963 -5.7877 -0.0365 32 1 -0.6283 -5.6913 -0.5544 33 1 -3.7302 -4.5793 -1.4310 34 1 -2.2640 -5.5449 -1.1377 35 1 -1.4975 -5.9509 1.1782 36 1 -2.2187 -6.3392 3.5003 37 1 -4.4310 -5.5593 4.2493 38 1 -5.9181 -4.3827 2.6787 39 1 -5.1932 -3.9862 0.3591 40 1 -2.4857 -0.6009 -2.6358 41 1 -1.0453 -1.6392 -2.5124 42 1 -3.6332 -2.4974 -3.6322 43 1 -2.2918 -2.0812 -4.5224 44 1 -1.9428 -1.3657 0.7211 45 1 -2.7215 -0.1429 -0.3780 46 1 -4.6868 -1.4753 -1.7450 47 1 -4.6431 -3.1964 -1.1572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167371089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:55 Heat of formation + Delta-G solvation = 82.591131 kcal Electronic energy + Delta-G solvation = -31341.271079 eV Core-core repulsion = 27491.084727 eV Total energy + Delta-G solvation = -3850.186351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49877 -38.70472 -37.98253 -35.24309 -33.98112 -33.27485 -31.42709 -30.59583 -30.12433 -29.23109 -28.06910 -26.20247 -25.42539 -24.81426 -23.42473 -22.24575 -21.55983 -21.29353 -20.33104 -18.39943 -17.45808 -16.60279 -16.37210 -16.09909 -15.44913 -15.11064 -14.98582 -14.69666 -14.50730 -14.42206 -14.11855 -13.92233 -13.87143 -13.18497 -13.09141 -12.87306 -12.65785 -12.42130 -12.33169 -12.01519 -11.90818 -11.71473 -11.34743 -11.18118 -11.02188 -10.90807 -10.70125 -10.63812 -10.34001 -10.19011 -9.98663 -9.82006 -9.42073 -9.24679 -8.64063 -8.48175 -8.39139 -8.26197 -7.90435 -7.46182 -6.44261 -6.37467 -4.47001 1.71660 1.83566 2.83266 3.09473 3.13184 3.22179 3.26833 3.74707 3.95343 4.16648 4.39897 4.65278 4.79715 5.10328 5.18254 5.25017 5.33416 5.41719 5.47707 5.50086 5.58710 5.77424 5.86135 5.91319 5.98430 6.03077 6.05332 6.14010 6.17947 6.37999 6.44608 6.47167 6.58967 6.69584 6.78104 6.84309 6.85600 6.89665 6.89836 6.99930 7.05583 7.14471 7.20022 7.40945 7.45546 7.57186 7.72070 7.81990 7.93346 8.01808 8.34118 8.53065 8.79228 9.09590 10.18686 10.35001 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.005077 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.317291 B = 5513.670153 C = 6170.888119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.080 3.920 3 Si 0.900 3.100 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.435 4.435 8 H 0.081 0.919 9 C 0.295 3.705 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.358 4.358 13 C 0.422 3.578 14 N -0.578 5.578 15 C 0.177 3.823 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.090 4.090 22 C 0.163 3.837 23 C 0.059 3.941 24 N -0.842 5.842 25 C 0.059 3.941 26 O -0.384 6.384 27 C 0.015 3.985 28 N -0.527 5.527 29 H 0.267 0.733 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.023 0.977 41 H 0.101 0.899 42 H 0.325 0.675 43 H 0.335 0.665 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -4.246 -1.863 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.099 0.901 9 C 0.168 3.832 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.384 4.384 13 C 0.185 3.815 14 N -0.293 5.293 15 C 0.053 3.947 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.109 4.109 22 C 0.075 3.925 23 C -0.072 4.072 24 N -0.370 5.370 25 C -0.018 4.018 26 O -0.303 6.303 27 C -0.063 4.063 28 N -0.248 5.248 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.041 0.959 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.934 -3.912 -1.397 10.768 hybrid contribution 0.516 0.981 -0.267 1.140 sum -9.418 -2.931 -1.664 10.003 Atomic orbital electron populations 1.70086 1.07028 1.26986 1.30175 1.25929 0.94807 1.00576 0.93141 0.86392 0.81055 0.81679 0.78347 1.18603 1.20048 1.20087 1.19541 0.94632 0.89551 1.42950 0.90129 1.18176 0.86989 0.91700 0.86294 1.21528 0.99354 0.93567 1.19355 1.20578 0.93431 0.96382 0.95209 1.20618 0.95761 0.95506 1.26512 1.18314 0.83569 0.90268 0.89351 1.45436 1.04482 1.04384 1.74998 1.20072 0.94906 0.88299 0.91387 1.20469 0.94111 0.97665 0.97707 1.21287 0.99245 0.97742 0.93298 1.21077 0.96305 1.01091 0.96171 1.21032 0.94801 0.99511 0.99038 1.20987 0.99624 0.99971 0.94017 1.20985 0.95982 0.97911 0.95981 1.22556 0.89963 0.86231 0.93765 1.22132 1.03333 0.92182 0.89592 1.58656 1.14183 1.58487 1.05713 1.24411 0.83207 0.95510 0.98688 1.89727 1.38169 1.76970 1.25433 1.24390 0.96256 0.99702 0.85922 1.68174 1.08073 1.24488 1.24064 0.92185 0.88935 0.89059 0.88909 0.90788 0.90233 0.85471 0.86754 0.86974 0.86911 0.86674 0.95920 0.88104 0.86338 0.85347 0.85911 0.91065 0.91014 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.15 9.47 55.55 0.53 -16.62 16 2 C 0.08 1.91 5.47 -17.35 -0.09 1.81 16 3 Si 0.90 18.04 29.57 -169.99 -5.03 13.01 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.43 -11.15 9.13 -37.74 -0.34 -11.50 16 8 H 0.08 2.00 7.86 -52.48 -0.41 1.59 16 9 C 0.30 7.74 6.52 -85.00 -0.55 7.18 16 10 C -0.32 -7.69 9.83 -38.65 -0.38 -8.07 16 11 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 12 C -0.36 -7.84 7.83 -38.87 -0.30 -8.15 16 13 C 0.42 9.62 6.82 -155.31 -1.06 8.56 16 14 N -0.58 -11.06 2.64 -167.54 -0.44 -11.51 16 15 C 0.18 2.90 4.86 -5.19 -0.03 2.88 16 16 C -0.10 -1.61 5.43 -104.62 -0.57 -2.18 16 17 C -0.10 -1.65 9.38 -39.58 -0.37 -2.02 16 18 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 19 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 20 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 21 C -0.09 -1.39 8.05 -39.58 -0.32 -1.71 16 22 C 0.16 2.91 0.70 -130.74 -0.09 2.82 16 23 C 0.06 1.04 6.28 -3.82 -0.02 1.02 16 24 N -0.84 -12.14 9.62 -10.37 -0.10 -12.24 16 25 C 0.06 1.18 6.79 37.64 0.26 1.44 16 26 O -0.38 -7.14 11.10 -35.23 -0.39 -7.54 16 27 C 0.01 0.23 6.42 37.64 0.24 0.47 16 28 N -0.53 -13.16 4.99 -10.33 -0.05 -13.21 16 29 H 0.27 5.86 8.29 -40.82 -0.34 5.52 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.09 1.83 4.99 -52.49 -0.26 1.57 16 33 H 0.07 1.06 5.94 -51.93 -0.31 0.75 16 34 H 0.08 1.30 6.07 -51.93 -0.32 0.99 16 35 H 0.13 2.22 5.65 -52.49 -0.30 1.92 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.65 5.62 -52.49 -0.29 1.36 16 40 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 41 H 0.10 2.23 6.93 -51.93 -0.36 1.87 16 42 H 0.33 3.95 8.18 -39.30 -0.32 3.63 16 43 H 0.33 4.31 9.08 -39.29 -0.36 3.95 16 44 H 0.12 2.96 6.49 -51.93 -0.34 2.63 16 45 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 46 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 47 H 0.09 1.22 3.86 -51.93 -0.20 1.02 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -27.57 365.79 -11.16 -38.73 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -5.96 Total: 19.25 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -5.23 Total: -15.40 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.07 Total: -53.58 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.39 Total: -7.54 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.57 -11.16 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167371089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.325 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds