Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48502 * 109.46877 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46929 * 299.99925 * 3 2 1 6 6 H 1.48495 * 109.47106 * 59.99755 * 3 2 1 7 7 C 1.40022 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 186.88316 * 7 2 1 9 9 C 1.41316 * 120.00259 * 6.88557 * 7 2 1 10 10 C 1.40588 * 119.78672 * 186.78513 * 9 7 2 11 11 C 1.38350 * 119.14706 * 179.70048 * 10 9 7 12 12 C 1.38633 * 118.67911 * 0.53479 * 11 10 9 13 13 C 1.39764 * 119.49129 * 359.46502 * 12 11 10 14 14 N 1.38831 * 119.58375 * 180.29711 * 13 12 11 15 15 C 1.46503 * 119.99852 * 10.05946 * 14 13 12 16 16 C 1.50697 * 109.47058 * 84.52948 * 15 14 13 17 17 C 1.38233 * 120.00367 * 275.38008 * 16 15 14 18 18 C 1.38239 * 120.00343 * 179.76563 * 17 16 15 19 19 C 1.38239 * 119.99581 * 0.51233 * 18 17 16 20 20 C 1.38237 * 120.00179 * 359.74082 * 19 18 17 21 21 C 1.38232 * 119.99800 * 0.02562 * 20 19 18 22 22 C 1.46491 * 120.00134 * 190.05841 * 14 13 12 23 23 C 1.53005 * 112.99802 * 64.70250 * 22 14 13 24 24 N 1.46906 * 109.46773 * 70.64786 * 23 22 14 25 25 C 1.54030 * 113.81945 * 292.88216 * 22 14 13 26 26 O 1.44569 * 85.38327 * 268.28847 * 25 22 14 27 27 C 1.44176 * 93.32902 * 335.80341 * 26 25 22 28 28 N 1.31978 * 120.83479 * 0.26828 * 13 12 11 29 29 H 0.96999 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.42660 * 359.97214 * 10 9 7 31 31 H 1.07995 * 120.65926 * 180.29204 * 11 10 9 32 32 H 1.07999 * 120.25535 * 179.73159 * 12 11 10 33 33 H 1.08996 * 109.47169 * 204.52855 * 15 14 13 34 34 H 1.09000 * 109.47398 * 324.53384 * 15 14 13 35 35 H 1.08002 * 119.99885 * 359.97438 * 17 16 15 36 36 H 1.07989 * 120.00175 * 180.22865 * 18 17 16 37 37 H 1.08005 * 119.99927 * 179.72613 * 19 18 17 38 38 H 1.07995 * 119.99579 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.99787 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47087 * 190.64187 * 23 22 14 41 41 H 1.08991 * 109.47245 * 310.64899 * 23 22 14 42 42 H 1.00893 * 110.99974 * 56.04621 * 24 23 22 43 43 H 1.00897 * 110.99740 * 179.97438 * 24 23 22 44 44 H 1.08999 * 113.86595 * 22.49228 * 25 22 14 45 45 H 1.09002 * 113.87117 * 154.20536 * 25 22 14 46 46 H 1.09006 * 113.86314 * 270.04749 * 27 26 25 47 47 H 1.08999 * 113.87075 * 138.33608 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0818 -1.2160 0.1116 9 6 1.3087 -2.4320 -0.1478 10 6 1.9939 -3.6513 -0.0051 11 6 1.2954 -4.8372 -0.1458 12 6 -0.0593 -4.7812 -0.4349 13 6 -0.6842 -3.5378 -0.5650 14 7 -2.0420 -3.4795 -0.8484 15 6 -2.8551 -4.6969 -0.7920 16 6 -3.2986 -4.9394 0.6277 17 6 -2.4659 -5.6046 1.5080 18 6 -2.8708 -5.8227 2.8116 19 6 -4.1128 -5.3850 3.2320 20 6 -4.9477 -4.7243 2.3503 21 6 -4.5408 -4.5020 1.0480 22 6 -2.6618 -2.2006 -1.2038 23 6 -2.1351 -1.6265 -2.5206 24 7 -2.6259 -2.4405 -3.6407 25 6 -2.6919 -1.1817 -0.0490 26 8 -3.9923 -1.7371 0.2519 27 6 -4.1985 -2.2031 -1.0968 28 7 0.0001 -2.4185 -0.4214 29 1 -0.4849 0.8401 0.0004 30 1 3.0510 -3.6621 0.2159 31 1 1.7963 -5.7877 -0.0365 32 1 -0.6283 -5.6913 -0.5544 33 1 -3.7302 -4.5793 -1.4310 34 1 -2.2640 -5.5449 -1.1377 35 1 -1.4975 -5.9509 1.1782 36 1 -2.2187 -6.3392 3.5003 37 1 -4.4310 -5.5593 4.2493 38 1 -5.9181 -4.3827 2.6787 39 1 -5.1932 -3.9862 0.3591 40 1 -2.4857 -0.6009 -2.6358 41 1 -1.0453 -1.6392 -2.5124 42 1 -3.6332 -2.4974 -3.6322 43 1 -2.2918 -2.0812 -4.5224 44 1 -1.9428 -1.3657 0.7211 45 1 -2.7215 -0.1429 -0.3780 46 1 -4.6868 -1.4753 -1.7450 47 1 -4.6431 -3.1964 -1.1572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167371089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 67.184464 kcal Electronic energy + Delta-G solvation = -31341.939162 eV Core-core repulsion = 27491.084727 eV Total energy + Delta-G solvation = -3850.854434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92383 -39.99844 -39.63199 -36.75753 -35.43012 -34.90449 -32.88094 -32.01957 -31.60616 -30.83402 -29.50581 -27.60011 -27.15844 -26.24548 -24.81717 -23.62109 -23.12720 -22.78187 -21.79867 -19.94686 -19.18688 -17.90673 -17.82462 -17.41021 -16.94085 -16.69734 -16.40858 -16.11267 -15.89231 -15.77789 -15.71398 -15.51024 -15.17543 -14.73005 -14.51569 -14.17250 -14.09638 -13.88697 -13.79992 -13.49975 -13.27571 -13.19107 -12.92444 -12.70901 -12.61064 -12.47127 -12.24696 -12.15303 -11.78900 -11.73427 -11.53264 -11.24557 -11.11278 -10.76532 -10.26267 -9.73980 -9.66543 -9.58930 -9.49720 -9.25354 -8.22045 -8.03348 -6.36278 0.51558 0.63889 1.11098 1.41822 1.43418 1.54520 1.58420 2.27114 2.31331 2.81362 2.96868 3.13004 3.35265 3.87434 3.89949 3.98930 4.12209 4.18506 4.23489 4.24875 4.32477 4.38529 4.42145 4.46915 4.54738 4.59131 4.71050 4.77353 4.83246 4.94248 5.04402 5.05673 5.10745 5.17521 5.22930 5.26358 5.33928 5.36314 5.41582 5.48151 5.68044 5.70704 5.78835 5.83329 6.04457 6.16106 6.21340 6.24305 6.28593 6.62832 6.68696 6.78058 6.97361 7.28741 8.39215 8.55073 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.005077 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.317291 B = 5513.670153 C = 6170.888119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.042 3.958 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.470 4.470 8 H 0.075 0.925 9 C 0.264 3.736 10 C -0.348 4.348 11 C -0.032 4.032 12 C -0.358 4.358 13 C 0.409 3.591 14 N -0.574 5.574 15 C 0.175 3.825 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.140 4.140 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.096 4.096 22 C 0.157 3.843 23 C 0.073 3.927 24 N -0.841 5.841 25 C 0.062 3.938 26 O -0.396 6.396 27 C 0.030 3.970 28 N -0.538 5.538 29 H 0.273 0.727 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.030 0.970 41 H 0.052 0.948 42 H 0.344 0.656 43 H 0.345 0.655 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 -4.272 -2.323 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.502 4.502 8 H 0.093 0.907 9 C 0.137 3.863 10 C -0.371 4.371 11 C -0.057 4.057 12 C -0.383 4.383 13 C 0.170 3.830 14 N -0.288 5.288 15 C 0.052 3.948 16 C -0.111 4.111 17 C -0.138 4.138 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.115 4.115 22 C 0.069 3.931 23 C -0.060 4.060 24 N -0.372 5.372 25 C -0.016 4.016 26 O -0.315 6.315 27 C -0.046 4.046 28 N -0.260 5.260 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.626 -3.971 -1.873 13.368 hybrid contribution 1.224 0.881 -0.098 1.511 sum -11.402 -3.090 -1.971 11.977 Atomic orbital electron populations 1.70168 1.07889 1.28007 1.29390 1.26601 0.95730 1.03096 0.92705 0.85325 0.79404 0.77432 0.78491 1.18880 1.19299 1.19553 1.19745 0.94639 0.90780 1.45065 0.90723 1.18589 0.88052 0.92608 0.87095 1.21639 0.99664 0.94166 1.21596 1.20909 0.93780 0.96907 0.94060 1.20912 0.95830 0.96218 1.25361 1.18709 0.85195 0.90150 0.88922 1.45581 1.03369 1.05796 1.74034 1.20264 0.95344 0.87052 0.92155 1.20481 0.94757 0.98317 0.97563 1.21335 0.99101 0.98986 0.94402 1.21329 0.97247 1.01336 0.95916 1.21382 0.94167 0.98590 1.00379 1.21362 1.00687 0.99304 0.93697 1.21180 0.95671 0.97803 0.96797 1.22647 0.92191 0.85204 0.93007 1.21794 1.00377 0.93130 0.90657 1.58519 1.15589 1.57792 1.05277 1.24095 0.83017 0.96323 0.98161 1.89700 1.37167 1.77065 1.27551 1.24583 0.93905 1.01593 0.84562 1.68183 1.07686 1.25597 1.24498 0.91612 0.88976 0.86207 0.86780 0.88118 0.90454 0.86837 0.85489 0.84320 0.84409 0.85339 0.95151 0.92934 0.84289 0.84186 0.90425 0.90796 0.87909 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.04 9.47 21.84 0.21 -35.83 16 2 C 0.04 2.05 5.47 85.29 0.47 2.52 16 3 Si 0.97 37.94 29.57 68.60 2.03 39.97 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.47 -25.42 9.13 23.46 0.21 -25.20 16 8 H 0.07 3.93 7.86 -2.91 -0.02 3.91 16 9 C 0.26 14.54 6.52 40.19 0.26 14.81 16 10 C -0.35 -17.78 9.83 22.87 0.22 -17.56 16 11 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 12 C -0.36 -15.83 7.83 22.73 0.18 -15.65 16 13 C 0.41 19.01 6.82 133.40 0.91 19.92 16 14 N -0.57 -21.66 2.64 -695.03 -1.83 -23.49 16 15 C 0.17 5.43 4.86 85.63 0.42 5.85 16 16 C -0.11 -3.46 5.43 -19.87 -0.11 -3.57 16 17 C -0.12 -4.00 9.38 22.27 0.21 -3.79 16 18 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 19 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 20 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 21 C -0.10 -2.73 8.05 22.27 0.18 -2.55 16 22 C 0.16 5.46 0.70 4.31 0.00 5.46 16 23 C 0.07 2.50 6.28 86.30 0.54 3.05 16 24 N -0.84 -22.45 9.62 -186.71 -1.80 -24.24 16 25 C 0.06 2.48 6.79 72.29 0.49 2.97 16 26 O -0.40 -13.99 11.10 -148.98 -1.65 -15.65 16 27 C 0.03 0.82 6.42 72.30 0.46 1.28 16 28 N -0.54 -27.98 4.99 -186.58 -0.93 -28.92 16 29 H 0.27 12.26 8.29 -92.71 -0.77 11.49 16 30 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.11 4.46 4.99 -2.91 -0.01 4.44 16 33 H 0.10 2.55 5.94 -2.39 -0.01 2.53 16 34 H 0.08 2.43 6.07 -2.39 -0.01 2.41 16 35 H 0.11 4.00 5.65 -2.91 -0.02 3.99 16 36 H 0.13 3.32 8.06 -2.92 -0.02 3.30 16 37 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.13 3.22 5.62 -2.91 -0.02 3.21 16 40 H 0.03 0.98 7.96 -2.39 -0.02 0.96 16 41 H 0.05 2.37 6.93 -2.39 -0.02 2.35 16 42 H 0.34 7.11 8.18 -89.70 -0.73 6.37 16 43 H 0.35 8.22 9.08 -89.70 -0.81 7.40 16 44 H 0.08 3.87 6.49 -2.39 -0.02 3.86 16 45 H 0.07 2.85 7.98 -2.39 -0.02 2.83 16 46 H 0.10 2.20 8.10 -2.38 -0.02 2.19 16 47 H 0.11 2.52 3.86 -2.39 -0.01 2.51 16 Total: -1.00 -63.12 365.79 0.86 -62.27 By element: Atomic # 1 Polarization: 50.50 SS G_CDS: -0.51 Total: 49.99 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.35 Total: -24.09 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.36 Total: -112.48 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.65 Total: -15.65 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -63.12 0.86 -62.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167371089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.451 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds