Wall clock time and date at job start Sat Apr 11 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86800 * 120.00344 * 2 1 4 4 H 1.48494 * 109.47354 * 270.00279 * 3 2 1 5 5 H 1.48510 * 109.46939 * 29.99836 * 3 2 1 6 6 H 1.48503 * 109.47511 * 149.99591 * 3 2 1 7 7 C 1.38952 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99695 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99953 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00009 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00065 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47395 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00159 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47114 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47131 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47131 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.47289 * 180.02562 * 19 18 17 21 21 C 1.34774 * 120.00072 * 180.02562 * 20 19 18 22 22 O 1.21498 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.48276 * 119.99666 * 179.97438 * 21 20 19 24 24 C 1.47490 * 128.70850 * 179.97438 * 23 21 20 25 25 N 1.30652 * 102.71779 * 180.02562 * 24 23 21 26 26 O 1.20843 * 109.61310 * 0.02562 * 25 24 23 27 27 N 1.20899 * 115.91218 * 359.69119 * 26 25 24 28 28 H 0.97000 * 119.99971 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99868 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46622 * 59.99780 * 12 10 9 31 31 H 1.08996 * 109.46908 * 299.99954 * 12 10 9 32 32 H 1.00907 * 110.99807 * 303.95482 * 13 12 10 33 33 H 1.09001 * 109.47271 * 60.00184 * 14 13 12 34 34 H 1.09004 * 109.47041 * 300.00031 * 14 13 12 35 35 H 1.09001 * 109.46832 * 59.99999 * 15 14 13 36 36 H 1.09000 * 109.47611 * 300.00296 * 15 14 13 37 37 H 1.08998 * 109.46509 * 60.00429 * 16 15 14 38 38 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 39 39 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 40 40 H 1.09004 * 109.47261 * 300.00303 * 17 16 15 41 41 H 1.09001 * 109.46997 * 60.00426 * 18 17 16 42 42 H 1.08996 * 109.47452 * 300.00000 * 18 17 16 43 43 H 1.09001 * 109.47289 * 60.00050 * 19 18 17 44 44 H 1.09004 * 109.47261 * 300.00306 * 19 18 17 45 45 H 0.97001 * 119.99251 * 0.02562 * 20 19 18 46 46 H 1.08000 * 128.64830 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 1.4979 -7.2708 0.0026 15 6 2.5228 -8.4068 0.0025 16 6 1.7933 -9.7518 0.0031 17 6 2.8182 -10.8878 0.0036 18 6 2.0889 -12.2327 0.0049 19 6 3.1137 -13.3687 0.0048 20 7 2.4153 -14.6566 0.0054 21 6 3.1201 -15.8053 0.0059 22 8 4.3347 -15.7729 0.0064 23 6 2.4132 -17.1087 0.0071 24 6 2.9851 -18.4682 0.0073 25 7 1.9219 -19.2276 0.0079 26 8 0.9303 -18.5370 0.0075 27 7 1.1181 -17.3427 0.0125 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6173 -4.9212 -0.8880 31 1 0.6167 -4.9201 0.8919 32 1 2.8331 -5.9128 -0.7788 33 1 0.8733 -7.3454 -0.8876 34 1 0.8727 -7.3451 0.8924 35 1 3.1477 -8.3324 0.8925 36 1 3.1477 -8.3324 -0.8874 37 1 1.1682 -9.8264 -0.8867 38 1 1.1688 -9.8259 0.8934 39 1 3.4431 -10.8129 0.8937 40 1 3.4432 -10.8137 -0.8864 41 1 1.4637 -12.3078 -0.8849 42 1 1.4642 -12.3065 0.8951 43 1 3.7393 -13.2938 0.8943 44 1 3.7381 -13.2947 -0.8857 45 1 1.4457 -14.6823 0.0054 46 1 4.0242 -18.7628 0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179856227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:13 Heat of formation + Delta-G solvation = -2.900945 kcal Electronic energy + Delta-G solvation = -26381.938390 eV Core-core repulsion = 22117.195562 eV Total energy + Delta-G solvation = -4264.742829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.01165 -40.94539 -40.16466 -38.00725 -36.96474 -36.01781 -35.86379 -35.59142 -35.07802 -33.29075 -32.38795 -29.47170 -27.88563 -26.78244 -25.61524 -25.08890 -23.68455 -22.34931 -22.12044 -21.63871 -21.02112 -20.13163 -19.90501 -19.65317 -18.63722 -17.82100 -17.28734 -17.22158 -16.95950 -16.53635 -16.17153 -16.05764 -15.95831 -15.41722 -15.31991 -15.11845 -15.03614 -14.38733 -13.99687 -13.81103 -13.71559 -13.55883 -13.46411 -13.12662 -13.03306 -12.88262 -12.57382 -12.46093 -12.42777 -12.37927 -12.12640 -11.99258 -11.91232 -11.79300 -11.71230 -11.51304 -11.47761 -11.30693 -10.36027 -10.35495 -10.02426 -9.30909 -8.47299 -5.96318 -0.42204 0.27277 1.38043 1.42014 1.46212 1.54921 1.71974 2.04211 2.29072 2.29757 2.42078 2.84691 2.94843 3.20001 3.52597 3.65140 3.69431 3.79525 4.00170 4.12957 4.20370 4.24178 4.32334 4.40629 4.46933 4.52439 4.54844 4.61558 4.71970 4.77238 4.85941 4.92542 5.04551 5.08006 5.16012 5.21369 5.34628 5.40417 5.51063 5.56208 5.90795 6.12675 6.13233 6.42758 6.59574 6.75759 7.11850 7.29205 7.55249 8.10688 8.70175 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.055645 B = 0.001018 C = 0.001001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.069184 B =27501.544992 C =27955.626175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.689 5.689 14 C 0.059 3.941 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.122 4.122 19 C 0.117 3.883 20 N -0.699 5.699 21 C 0.605 3.395 22 O -0.544 6.544 23 C -0.052 4.052 24 C 0.050 3.950 25 N -0.363 5.363 26 O 0.342 5.658 27 N -0.321 5.321 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.343 0.657 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.418 0.582 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -36.402 -0.990 36.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.321 5.321 14 C -0.069 4.069 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.153 4.153 18 C -0.160 4.160 19 C -0.005 4.005 20 N -0.351 5.351 21 C 0.388 3.612 22 O -0.420 6.420 23 C -0.217 4.217 24 C -0.136 4.136 25 N -0.087 5.087 26 O 0.116 5.884 27 N -0.040 5.040 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.255 0.745 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.366 -36.570 -0.293 36.597 hybrid contribution 0.081 1.317 -0.869 1.579 sum -1.285 -35.254 -1.161 35.296 Atomic orbital electron populations 1.69665 1.06851 1.29355 1.50218 1.26030 0.96527 1.02376 0.96130 0.84934 0.77903 0.76839 0.78701 1.19545 1.19442 1.19807 1.19688 0.92732 0.84101 1.50134 0.90374 1.41929 1.09334 1.04698 1.64975 1.20930 0.88281 0.86253 0.82227 1.90486 1.15928 1.87995 1.56728 1.21536 0.94065 0.88165 1.03003 1.60109 1.19288 1.01358 1.51341 1.22101 0.96278 0.87524 1.01029 1.21522 0.97825 0.93576 1.02228 1.21467 0.97984 0.92431 1.02824 1.21454 0.98161 0.92894 1.02754 1.21735 0.97662 0.92528 1.04028 1.21603 0.95665 0.80444 1.02833 1.45864 1.11506 1.05183 1.72518 1.16561 0.85817 0.81665 0.77160 1.90861 1.13454 1.86806 1.50851 1.26182 0.89090 0.98122 1.08324 1.28258 1.02544 0.85364 0.97455 1.75131 0.95079 1.21411 1.17106 1.85106 1.30470 1.09775 1.63082 1.75363 1.17783 0.98446 1.12450 0.91240 0.76935 0.91619 0.87885 0.83903 0.94407 0.90629 0.92164 0.92288 0.91204 0.91209 0.91680 0.91577 0.90090 0.90128 0.91142 0.91099 0.74492 0.72990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 13.05 21.66 0.28 -49.35 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 10 C 0.44 21.04 7.82 87.66 0.69 21.73 16 11 O -0.62 -35.25 15.78 -3.07 -0.05 -35.30 16 12 C 0.06 2.24 6.17 85.56 0.53 2.77 16 13 N -0.69 -21.86 6.13 -517.94 -3.17 -25.03 16 14 C 0.06 1.30 5.68 86.30 0.49 1.79 16 15 C -0.11 -2.04 5.47 30.60 0.17 -1.88 16 16 C -0.11 -1.28 5.21 30.60 0.16 -1.12 16 17 C -0.11 -1.11 5.21 30.59 0.16 -0.95 16 18 C -0.12 -0.79 5.33 30.59 0.16 -0.63 16 19 C 0.12 1.09 5.67 86.38 0.49 1.58 16 20 N -0.70 -6.59 5.55 -465.55 -2.59 -9.18 16 21 C 0.61 8.25 7.85 86.91 0.68 8.93 16 22 O -0.54 -10.78 17.05 -3.71 -0.06 -10.84 16 23 C -0.05 -0.58 7.56 44.29 0.34 -0.24 16 24 C 0.05 0.41 12.63 87.31 1.10 1.52 16 25 N -0.36 -3.93 12.22 -61.42 -0.75 -4.68 16 26 O 0.34 3.77 11.65 140.85 1.64 5.41 16 27 N -0.32 -3.54 12.13 -52.07 -0.63 -4.17 16 28 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.34 11.42 8.43 -89.69 -0.76 10.67 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.42 2.41 8.33 -92.71 -0.77 1.64 16 46 H 0.25 0.49 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -72.48 401.68 0.09 -72.39 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -1.23 Total: 32.19 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.24 Total: 14.87 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -8.48 Total: -123.67 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: 1.53 Total: -40.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -72.48 0.09 -72.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179856227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.486 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds