Wall clock time and date at job start Sat Apr 11 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39648 * 120.15071 * 75.82940 * 3 2 1 5 5 C 1.37923 * 119.84588 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.15293 * 0.02562 * 5 4 3 7 7 C 1.38342 * 120.30595 * 359.97438 * 6 5 4 8 8 C 1.37966 * 120.15000 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.07837 * 179.97438 * 8 7 6 10 10 C 1.50703 * 115.55191 * 220.93508 * 9 8 7 11 11 O 1.21283 * 120.00060 * 244.96609 * 10 9 8 12 12 N 1.34773 * 119.99605 * 64.96845 * 10 9 8 13 13 C 1.47083 * 120.88385 * 5.85674 * 12 10 9 14 14 C 1.53688 * 108.27870 * 128.75565 * 13 12 10 15 15 N 1.46902 * 109.25927 * 54.08175 * 14 13 12 16 16 C 1.46903 * 110.99916 * 172.61204 * 15 14 13 17 17 C 1.50695 * 109.47162 * 53.68720 * 16 15 14 18 18 H 1.07990 * 120.00418 * 5.84489 * 17 16 15 19 19 C 1.37883 * 119.99428 * 185.84058 * 17 16 15 20 20 N 1.31513 * 120.00296 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47151 * 120.00401 * 21 19 17 24 24 H 1.48501 * 109.47460 * 240.00064 * 21 19 17 25 25 C 1.46899 * 111.26684 * 296.75440 * 15 14 13 26 26 C 1.47083 * 120.88193 * 186.13068 * 12 10 9 27 27 C 1.53002 * 117.49687 * 75.23040 * 9 8 7 28 28 C 1.52995 * 117.49907 * 6.61013 * 9 8 7 29 29 H 1.08002 * 120.08031 * 0.03995 * 4 3 2 30 30 H 1.08006 * 119.92790 * 179.72803 * 5 4 3 31 31 H 1.08007 * 119.85120 * 179.97438 * 6 5 4 32 32 H 1.08007 * 119.92548 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.62369 * 248.52017 * 13 12 10 34 34 H 1.09001 * 109.62779 * 9.10106 * 13 12 10 35 35 H 1.09000 * 109.64825 * 294.07612 * 14 13 12 36 36 H 1.09001 * 109.44913 * 173.95988 * 14 13 12 37 37 H 1.09004 * 109.46681 * 173.69306 * 16 15 14 38 38 H 1.09000 * 109.46562 * 293.68658 * 16 15 14 39 39 H 0.96999 * 120.00141 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.49985 * 303.14714 * 25 15 14 41 41 H 1.08997 * 109.49458 * 183.06169 * 25 15 14 42 42 H 1.09005 * 109.62273 * 350.89904 * 26 12 10 43 43 H 1.09007 * 109.62652 * 111.27824 * 26 12 10 44 44 H 1.09002 * 117.50158 * 0.02562 * 27 9 8 45 45 H 1.08997 * 117.49936 * 145.02084 * 27 9 8 46 46 H 1.09001 * 117.49826 * 214.97735 * 28 9 8 47 47 H 1.09005 * 117.49811 * 359.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.2947 -1.1708 5 6 4.6488 -0.2928 -1.1636 6 6 5.3373 0.0003 0.0004 7 6 4.6487 0.2938 1.1638 8 6 3.2691 0.2955 1.1708 9 6 2.5206 0.6148 2.4392 10 6 1.3063 -0.2360 2.7091 11 8 0.2030 0.2676 2.7185 12 7 1.4465 -1.5563 2.9402 13 6 2.7804 -2.1643 3.0603 14 6 2.8206 -2.9857 4.3587 15 7 1.7018 -3.9378 4.3646 16 6 1.8024 -4.8611 5.5027 17 6 1.9325 -4.0719 6.7798 18 1 1.8452 -2.9957 6.7609 19 6 2.1630 -4.7241 7.9726 20 7 2.2697 -6.0347 7.9957 21 14 2.3236 -3.7459 9.5559 22 1 2.1648 -2.2989 9.2621 23 1 1.2711 -4.1749 10.5117 24 1 3.6619 -3.9864 10.1528 25 6 0.4088 -3.2406 4.3650 26 6 0.2697 -2.4286 3.0729 27 6 2.4700 2.0791 2.8800 28 6 3.3397 1.0795 3.6450 29 1 2.7334 -0.5238 -2.0799 30 1 5.1927 -0.5253 -2.0672 31 1 6.4174 0.0000 0.0007 32 1 5.1924 0.5212 2.0690 33 1 2.9642 -2.8155 2.2057 34 1 3.5377 -1.3812 3.0972 35 1 2.7354 -2.3191 5.2169 36 1 3.7626 -3.5312 4.4140 37 1 0.9067 -5.4808 5.5480 38 1 2.6785 -5.4975 5.3779 39 1 2.4322 -6.4934 8.8348 40 1 0.3572 -2.5704 5.2230 41 1 -0.3981 -3.9708 4.4243 42 1 -0.6337 -1.8203 3.1182 43 1 0.2150 -3.1023 2.2177 44 1 2.9777 2.8115 2.2524 45 1 1.5582 2.4273 3.3653 46 1 3.0002 0.7702 4.6335 47 1 4.4202 1.1539 3.5209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183293005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:16 Heat of formation + Delta-G solvation = 67.401938 kcal Electronic energy + Delta-G solvation = -30158.643484 eV Core-core repulsion = 26307.798479 eV Total energy + Delta-G solvation = -3850.845004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03299 -39.27820 -37.72987 -36.68736 -36.14856 -34.41350 -32.34485 -31.68173 -31.09213 -30.67624 -28.26637 -25.82453 -24.73362 -24.20212 -23.32277 -22.77166 -22.35683 -21.53800 -20.10343 -19.24948 -18.36484 -17.25870 -16.43180 -16.17060 -15.99300 -15.48942 -15.11044 -14.84387 -14.78036 -14.51658 -14.39733 -14.25123 -13.94326 -13.72525 -13.38614 -13.23720 -12.89638 -12.84266 -12.61750 -12.48059 -12.16964 -11.90799 -11.88069 -11.81348 -11.45504 -11.19924 -11.10862 -11.01035 -10.95361 -10.74639 -10.69074 -10.60626 -10.31525 -9.89260 -9.70504 -9.58485 -9.28167 -8.99073 -8.50273 -8.39495 -7.27528 -6.09249 -4.18662 0.49505 0.90833 2.53006 2.80511 2.83423 3.05167 3.21667 3.30511 3.33526 3.44506 3.73732 3.81967 4.09967 4.35134 4.37732 4.46742 4.61639 4.65951 4.71001 4.90781 5.01261 5.03075 5.21135 5.25816 5.35305 5.39013 5.42395 5.50198 5.59261 5.65028 5.68425 5.75770 5.88137 5.88932 5.92542 5.99252 6.03295 6.06321 6.12974 6.41059 6.43106 6.59416 6.68903 6.75872 7.17556 7.45742 7.53398 7.59460 7.83200 7.93933 8.17033 8.21997 8.30950 8.91410 9.48742 10.95875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003366 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.310059 B = 8317.593439 C = 8472.379449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C 0.228 3.772 3 C -0.013 4.013 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.086 4.086 7 C -0.117 4.117 8 C 0.006 3.994 9 C -0.134 4.134 10 C 0.546 3.454 11 O -0.532 6.532 12 N -0.596 5.596 13 C 0.111 3.889 14 C 0.053 3.947 15 N -0.540 5.540 16 C 0.187 3.813 17 C -0.550 4.550 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.051 3.949 26 C 0.118 3.882 27 C -0.130 4.130 28 C -0.151 4.151 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.027 0.973 38 H 0.038 0.962 39 H 0.262 0.738 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.543 13.479 -17.032 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.053 5.053 2 C -0.088 4.088 3 C -0.016 4.016 4 C -0.090 4.090 5 C -0.140 4.140 6 C -0.105 4.105 7 C -0.135 4.135 8 C 0.003 3.997 9 C -0.138 4.138 10 C 0.333 3.667 11 O -0.409 6.409 12 N -0.328 5.328 13 C -0.012 4.012 14 C -0.076 4.076 15 N -0.264 5.264 16 C 0.062 3.938 17 C -0.589 4.589 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.079 4.079 26 C -0.005 4.005 27 C -0.167 4.167 28 C -0.188 4.188 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.217 13.283 -17.332 22.998 hybrid contribution 0.535 0.708 1.846 2.048 sum 7.751 13.991 -15.487 22.264 Atomic orbital electron populations 1.81254 1.11744 1.06765 1.05563 1.25569 0.92739 0.95162 0.95356 1.15847 0.84730 1.06209 0.94808 1.21169 0.94475 0.96872 0.96469 1.21114 0.93487 1.00498 0.98903 1.21361 1.00516 0.96422 0.92215 1.21027 0.92383 1.00805 0.99282 1.18805 0.93029 0.96893 0.90925 1.20181 0.98872 0.99381 0.95321 1.19208 0.88649 0.81959 0.76906 1.90724 1.26344 1.72186 1.51642 1.48038 1.08392 1.06666 1.69729 1.22123 0.82945 0.96751 0.99415 1.22291 0.96099 0.94739 0.94460 1.62487 1.00394 1.17696 1.45836 1.19777 0.97989 0.91043 0.85006 1.21756 1.50151 0.93674 0.93361 0.92562 1.24950 0.94903 0.94772 0.99025 1.69945 1.48860 1.07215 1.26739 0.86608 0.77783 0.80305 0.83739 1.19911 1.20910 1.20858 1.22240 0.93835 0.96780 0.94998 1.21814 0.87965 0.92079 0.98622 1.23089 1.02481 0.89405 1.01759 1.23248 0.98550 1.01866 0.95177 0.84900 0.84859 0.84930 0.84482 0.91333 0.90117 0.93676 0.90257 0.95476 0.94421 0.92798 0.94185 0.90466 0.89653 0.91517 0.87564 0.87347 0.87430 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.51 17.39 41.84 0.73 -5.79 16 2 C 0.23 3.30 12.33 -22.47 -0.28 3.02 16 3 C -0.01 -0.14 5.69 -106.93 -0.61 -0.75 16 4 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 5 C -0.12 -0.71 10.03 -39.64 -0.40 -1.11 16 6 C -0.09 -0.49 10.04 -39.49 -0.40 -0.89 16 7 C -0.12 -0.84 9.12 -39.64 -0.36 -1.20 16 8 C 0.01 0.06 4.34 -104.21 -0.45 -0.39 16 9 C -0.13 -1.61 0.93 -156.81 -0.15 -1.76 16 10 C 0.55 8.86 4.64 -10.99 -0.05 8.81 16 11 O -0.53 -10.49 14.71 5.56 0.08 -10.40 16 12 N -0.60 -9.67 3.00 -172.17 -0.52 -10.19 16 13 C 0.11 1.61 6.07 -3.37 -0.02 1.59 16 14 C 0.05 0.97 5.06 -3.47 -0.02 0.95 16 15 N -0.54 -11.10 4.83 -235.47 -1.14 -12.24 16 16 C 0.19 4.65 5.16 -4.98 -0.03 4.63 16 17 C -0.55 -14.69 7.77 -34.44 -0.27 -14.96 16 18 H 0.06 1.51 5.90 -52.49 -0.31 1.20 16 19 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.05 0.99 5.32 -3.70 -0.02 0.97 16 26 C 0.12 2.05 6.61 -3.60 -0.02 2.03 16 27 C -0.13 -1.36 9.76 -26.73 -0.26 -1.62 16 28 C -0.15 -1.46 8.66 -26.74 -0.23 -1.69 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 31 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 32 H 0.14 0.73 5.98 -52.48 -0.31 0.42 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.97 5.06 -51.93 -0.26 0.71 16 35 H 0.05 0.91 6.52 -51.93 -0.34 0.57 16 36 H 0.08 1.42 8.11 -51.93 -0.42 0.99 16 37 H 0.03 0.72 7.96 -51.93 -0.41 0.31 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.04 0.87 7.27 -51.93 -0.38 0.49 16 41 H 0.08 1.49 7.98 -51.93 -0.41 1.07 16 42 H 0.09 1.57 7.04 -51.93 -0.37 1.20 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.11 1.30 7.99 -51.93 -0.41 0.89 16 46 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.11 0.74 6.14 -51.93 -0.32 0.42 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -33.36 379.98 -9.91 -43.27 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.47 Total: -0.02 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -4.04 Total: -1.57 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.19 Total: -53.05 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.36 -9.91 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183293005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.671 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds