Wall clock time and date at job start Sat Apr 11 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39648 * 120.15071 * 75.82940 * 3 2 1 5 5 C 1.37923 * 119.84588 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.15293 * 0.02562 * 5 4 3 7 7 C 1.38342 * 120.30595 * 359.97438 * 6 5 4 8 8 C 1.37966 * 120.15000 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.07837 * 179.97438 * 8 7 6 10 10 C 1.50703 * 115.55191 * 220.93508 * 9 8 7 11 11 O 1.21283 * 120.00060 * 244.96609 * 10 9 8 12 12 N 1.34773 * 119.99605 * 64.96845 * 10 9 8 13 13 C 1.47083 * 120.88385 * 5.85674 * 12 10 9 14 14 C 1.53688 * 108.27870 * 128.75565 * 13 12 10 15 15 N 1.46902 * 109.25927 * 54.08175 * 14 13 12 16 16 C 1.46903 * 110.99916 * 172.61204 * 15 14 13 17 17 C 1.50695 * 109.47162 * 53.68720 * 16 15 14 18 18 H 1.07990 * 120.00418 * 5.84489 * 17 16 15 19 19 C 1.37883 * 119.99428 * 185.84058 * 17 16 15 20 20 N 1.31513 * 120.00296 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47151 * 120.00401 * 21 19 17 24 24 H 1.48501 * 109.47460 * 240.00064 * 21 19 17 25 25 C 1.46899 * 111.26684 * 296.75440 * 15 14 13 26 26 C 1.47083 * 120.88193 * 186.13068 * 12 10 9 27 27 C 1.53002 * 117.49687 * 75.23040 * 9 8 7 28 28 C 1.52995 * 117.49907 * 6.61013 * 9 8 7 29 29 H 1.08002 * 120.08031 * 0.03995 * 4 3 2 30 30 H 1.08006 * 119.92790 * 179.72803 * 5 4 3 31 31 H 1.08007 * 119.85120 * 179.97438 * 6 5 4 32 32 H 1.08007 * 119.92548 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.62369 * 248.52017 * 13 12 10 34 34 H 1.09001 * 109.62779 * 9.10106 * 13 12 10 35 35 H 1.09000 * 109.64825 * 294.07612 * 14 13 12 36 36 H 1.09001 * 109.44913 * 173.95988 * 14 13 12 37 37 H 1.09004 * 109.46681 * 173.69306 * 16 15 14 38 38 H 1.09000 * 109.46562 * 293.68658 * 16 15 14 39 39 H 0.96999 * 120.00141 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.49985 * 303.14714 * 25 15 14 41 41 H 1.08997 * 109.49458 * 183.06169 * 25 15 14 42 42 H 1.09005 * 109.62273 * 350.89904 * 26 12 10 43 43 H 1.09007 * 109.62652 * 111.27824 * 26 12 10 44 44 H 1.09002 * 117.50158 * 0.02562 * 27 9 8 45 45 H 1.08997 * 117.49936 * 145.02084 * 27 9 8 46 46 H 1.09001 * 117.49826 * 214.97735 * 28 9 8 47 47 H 1.09005 * 117.49811 * 359.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.2947 -1.1708 5 6 4.6488 -0.2928 -1.1636 6 6 5.3373 0.0003 0.0004 7 6 4.6487 0.2938 1.1638 8 6 3.2691 0.2955 1.1708 9 6 2.5206 0.6148 2.4392 10 6 1.3063 -0.2360 2.7091 11 8 0.2030 0.2676 2.7185 12 7 1.4465 -1.5563 2.9402 13 6 2.7804 -2.1643 3.0603 14 6 2.8206 -2.9857 4.3587 15 7 1.7018 -3.9378 4.3646 16 6 1.8024 -4.8611 5.5027 17 6 1.9325 -4.0719 6.7798 18 1 1.8452 -2.9957 6.7609 19 6 2.1630 -4.7241 7.9726 20 7 2.2697 -6.0347 7.9957 21 14 2.3236 -3.7459 9.5559 22 1 2.1648 -2.2989 9.2621 23 1 1.2711 -4.1749 10.5117 24 1 3.6619 -3.9864 10.1528 25 6 0.4088 -3.2406 4.3650 26 6 0.2697 -2.4286 3.0729 27 6 2.4700 2.0791 2.8800 28 6 3.3397 1.0795 3.6450 29 1 2.7334 -0.5238 -2.0799 30 1 5.1927 -0.5253 -2.0672 31 1 6.4174 0.0000 0.0007 32 1 5.1924 0.5212 2.0690 33 1 2.9642 -2.8155 2.2057 34 1 3.5377 -1.3812 3.0972 35 1 2.7354 -2.3191 5.2169 36 1 3.7626 -3.5312 4.4140 37 1 0.9067 -5.4808 5.5480 38 1 2.6785 -5.4975 5.3779 39 1 2.4322 -6.4934 8.8348 40 1 0.3572 -2.5704 5.2230 41 1 -0.3981 -3.9708 4.4243 42 1 -0.6337 -1.8203 3.1182 43 1 0.2150 -3.1023 2.2177 44 1 2.9777 2.8115 2.2524 45 1 1.5582 2.4273 3.3653 46 1 3.0002 0.7702 4.6335 47 1 4.4202 1.1539 3.5209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183293005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:15 Heat of formation + Delta-G solvation = 46.267978 kcal Electronic energy + Delta-G solvation = -30159.559921 eV Core-core repulsion = 26307.798479 eV Total energy + Delta-G solvation = -3851.761441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02170 -40.26385 -39.11640 -37.72805 -37.15843 -36.05254 -34.32085 -32.34386 -32.16355 -31.62901 -29.98159 -27.48360 -25.90257 -24.91812 -24.61705 -24.14994 -23.39433 -22.68683 -21.41691 -20.17772 -19.54810 -18.49367 -18.12817 -17.30827 -17.03493 -16.75975 -16.28670 -16.04398 -16.01156 -15.63850 -15.52351 -15.42059 -15.21530 -14.95786 -14.92080 -14.33569 -14.06035 -13.86010 -13.80073 -13.70498 -13.54292 -13.30225 -13.02664 -12.92174 -12.66185 -12.61050 -12.49280 -12.43795 -12.28523 -12.12292 -12.02692 -11.80482 -11.71777 -11.60235 -11.58605 -10.81432 -10.63299 -9.85911 -9.81004 -9.63045 -9.08282 -8.18580 -6.37562 -0.15537 0.38737 1.33171 1.36030 1.36450 1.46279 1.75663 1.84697 2.04354 2.34744 2.58910 2.93815 3.02192 3.06805 3.25653 3.33490 3.37126 3.74055 3.82522 3.97169 4.03109 4.08400 4.21358 4.26530 4.28527 4.43738 4.47078 4.53304 4.54138 4.64522 4.67769 4.69919 4.80257 4.84813 4.92833 4.95904 5.06449 5.12940 5.15246 5.19492 5.30934 5.40860 5.43662 5.47790 5.58481 5.71420 5.96958 5.97402 6.15524 6.37707 6.41099 6.52729 6.82192 7.04672 7.34044 8.84334 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003366 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.310059 B = 8317.593439 C = 8472.379449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.247 3.753 3 C -0.049 4.049 4 C -0.069 4.069 5 C -0.114 4.114 6 C -0.070 4.070 7 C -0.113 4.113 8 C -0.003 4.003 9 C -0.149 4.149 10 C 0.541 3.459 11 O -0.577 6.577 12 N -0.601 5.601 13 C 0.124 3.876 14 C 0.054 3.946 15 N -0.535 5.535 16 C 0.201 3.799 17 C -0.556 4.556 18 H 0.051 0.949 19 C 0.017 3.983 20 N -0.922 5.922 21 Si 0.953 3.047 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.060 3.940 26 C 0.129 3.871 27 C -0.132 4.132 28 C -0.132 4.132 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.023 0.977 36 H 0.085 0.915 37 H 0.001 0.999 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 14.904 -18.105 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.067 4.067 3 C -0.052 4.052 4 C -0.089 4.089 5 C -0.131 4.131 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.005 4.005 9 C -0.152 4.152 10 C 0.330 3.670 11 O -0.456 6.456 12 N -0.333 5.333 13 C 0.002 3.998 14 C -0.075 4.075 15 N -0.259 5.259 16 C 0.074 3.926 17 C -0.595 4.595 18 H 0.069 0.931 19 C -0.183 4.183 20 N -0.562 5.562 21 Si 0.779 3.221 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.069 4.069 26 C 0.006 3.994 27 C -0.169 4.169 28 C -0.168 4.168 29 H 0.158 0.842 30 H 0.182 0.818 31 H 0.187 0.813 32 H 0.180 0.820 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.042 0.958 36 H 0.104 0.896 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.152 0.848 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.626 14.716 -18.420 26.287 hybrid contribution -0.780 0.260 2.113 2.267 sum 10.846 14.977 -16.307 24.655 Atomic orbital electron populations 1.81246 1.13879 1.09731 1.07766 1.26377 0.93700 0.93195 0.93458 1.16116 0.82726 1.09589 0.96770 1.21371 0.95640 0.96243 0.95653 1.21520 0.92400 0.98780 1.00422 1.21829 1.02270 0.93583 0.91102 1.21309 0.90769 0.99990 1.01024 1.18739 0.94125 0.98394 0.89291 1.20128 0.97987 0.99356 0.97717 1.20016 0.89672 0.81864 0.75444 1.90698 1.28693 1.72922 1.53317 1.48147 1.08443 1.06941 1.69774 1.22130 0.82824 0.97271 0.97540 1.22361 0.95173 0.94124 0.95807 1.62423 1.01653 1.18323 1.43530 1.19446 0.95739 0.91282 0.86108 1.21932 1.49773 0.93489 0.94277 0.93097 1.25731 0.94594 0.95683 1.02276 1.70050 1.49713 1.08666 1.27756 0.85582 0.78085 0.78802 0.79644 1.19659 1.20806 1.19658 1.22143 0.93402 0.96206 0.95194 1.21531 0.88536 0.91915 0.97459 1.23151 1.02052 0.89486 1.02202 1.23400 1.00489 0.99739 0.93201 0.84153 0.81756 0.81318 0.81987 0.90039 0.86771 0.95824 0.89634 0.98079 0.96290 0.92513 0.96860 0.90853 0.91102 0.90717 0.84767 0.90031 0.89308 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.48 17.39 19.00 0.33 -16.15 16 2 C 0.25 7.34 12.33 88.33 1.09 8.43 16 3 C -0.05 -0.98 5.69 -21.36 -0.12 -1.10 16 4 C -0.07 -0.88 9.76 22.54 0.22 -0.66 16 5 C -0.11 -0.73 10.03 22.23 0.22 -0.50 16 6 C -0.07 -0.34 10.04 22.33 0.22 -0.12 16 7 C -0.11 -1.00 9.12 22.23 0.20 -0.79 16 8 C 0.00 -0.04 4.34 -19.60 -0.09 -0.13 16 9 C -0.15 -3.35 0.93 -53.67 -0.05 -3.40 16 10 C 0.54 17.86 4.64 87.66 0.41 18.26 16 11 O -0.58 -24.07 14.71 -3.04 -0.04 -24.12 16 12 N -0.60 -19.66 3.00 -817.03 -2.45 -22.11 16 13 C 0.12 3.41 6.07 86.50 0.53 3.93 16 14 C 0.05 1.94 5.06 86.53 0.44 2.38 16 15 N -0.54 -22.49 4.83 -898.89 -4.34 -26.83 16 16 C 0.20 10.31 5.16 85.55 0.44 10.75 16 17 C -0.56 -30.26 7.77 25.60 0.20 -30.06 16 18 H 0.05 2.79 5.90 -2.92 -0.02 2.77 16 19 C 0.02 0.94 5.46 84.66 0.46 1.41 16 20 N -0.92 -53.73 13.29 21.45 0.28 -53.45 16 21 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.06 2.45 5.32 86.38 0.46 2.91 16 26 C 0.13 4.69 6.61 86.35 0.57 5.26 16 27 C -0.13 -2.57 9.76 30.59 0.30 -2.27 16 28 C -0.13 -2.17 8.66 30.59 0.26 -1.91 16 29 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 31 H 0.17 -0.26 8.06 -2.91 -0.02 -0.29 16 32 H 0.16 0.59 5.98 -2.91 -0.02 0.57 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 2.37 5.06 -2.39 -0.01 2.36 16 35 H 0.02 0.95 6.52 -2.39 -0.02 0.93 16 36 H 0.09 2.95 8.11 -2.39 -0.02 2.93 16 37 H 0.00 0.06 7.96 -2.38 -0.02 0.04 16 38 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.01 0.60 7.27 -2.39 -0.02 0.59 16 41 H 0.07 3.00 7.98 -2.39 -0.02 2.98 16 42 H 0.07 2.80 7.04 -2.38 -0.02 2.78 16 43 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 44 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.03 7.99 -2.39 -0.02 2.01 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.15 1.19 6.14 -2.38 -0.01 1.17 16 Total: -1.00 -78.57 379.98 2.57 -76.01 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.00 Total: 8.83 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.77 Total: 12.40 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -6.18 Total: -118.54 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.12 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -78.57 2.57 -76.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183293005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.274 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds