Wall clock time and date at job start Sat Apr 11 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48492 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46815 * 299.99585 * 3 2 1 6 6 H 1.48500 * 109.47388 * 59.99310 * 3 2 1 7 7 C 1.38945 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00102 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00011 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00461 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47254 * 174.02446 * 12 10 9 14 14 C 1.47862 * 111.00309 * 300.91904 * 13 12 10 15 15 C 1.53785 * 107.12645 * 212.90549 * 14 13 12 16 16 H 1.09006 * 112.75587 * 239.97173 * 15 14 13 17 17 C 1.54939 * 108.81384 * 113.28513 * 15 14 13 18 18 C 1.55099 * 101.78232 * 214.02284 * 17 15 14 19 19 N 1.47358 * 104.66300 * 37.42589 * 18 17 15 20 20 C 1.34778 * 125.57312 * 154.72387 * 19 18 17 21 21 O 1.21277 * 120.00154 * 179.69778 * 20 19 18 22 22 C 1.50698 * 119.99815 * 359.69387 * 20 19 18 23 23 N 1.46503 * 109.47199 * 180.02562 * 22 20 19 24 24 C 1.34770 * 120.00172 * 179.97438 * 23 22 20 25 25 N 1.34776 * 120.00154 * 179.97438 * 24 23 22 26 26 O 1.21584 * 120.00271 * 0.02562 * 24 23 22 27 27 C 1.46850 * 108.85226 * 334.46337 * 19 18 17 28 28 H 1.08998 * 112.01970 * 238.50273 * 27 19 18 29 29 C 1.48413 * 110.99903 * 183.57809 * 13 12 10 30 30 H 0.97005 * 120.00356 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00176 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46777 * 54.02732 * 12 10 9 33 33 H 1.08996 * 109.46885 * 294.03048 * 12 10 9 34 34 H 1.09001 * 109.90288 * 332.27125 * 14 13 12 35 35 H 1.08997 * 109.90707 * 93.52535 * 14 13 12 36 36 H 1.08992 * 110.94196 * 332.36262 * 17 15 14 37 37 H 1.08998 * 110.94377 * 96.02706 * 17 15 14 38 38 H 1.08997 * 110.52097 * 278.59405 * 18 17 15 39 39 H 1.09003 * 110.34337 * 156.17040 * 18 17 15 40 40 H 1.09001 * 109.47397 * 59.99948 * 22 20 19 41 41 H 1.08999 * 109.47451 * 300.00159 * 22 20 19 42 42 H 0.97000 * 119.99558 * 0.02562 * 23 22 20 43 43 H 0.97001 * 120.00173 * 0.02562 * 25 24 23 44 44 H 0.97000 * 120.00275 * 179.72516 * 25 24 23 45 45 H 1.08999 * 110.58928 * 41.02626 * 29 13 12 46 46 H 1.09001 * 110.71953 * 278.17130 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1919 -5.9758 -0.1409 14 6 2.9657 -5.8548 -1.3951 15 6 3.2515 -7.2825 -1.8903 16 1 4.3175 -7.4968 -1.9664 17 6 2.4815 -7.5155 -3.2145 18 6 2.1157 -9.0190 -3.1077 19 7 1.8044 -9.2268 -1.6824 20 6 1.0030 -10.1908 -1.1874 21 8 0.8206 -10.2727 0.0088 22 6 0.3334 -11.1666 -2.1203 23 7 -0.4782 -12.1068 -1.3432 24 6 -1.1733 -13.0758 -1.9710 25 7 -1.9195 -13.9410 -1.2561 26 8 -1.1266 -13.1700 -3.1823 27 6 2.5151 -8.2158 -0.8891 28 1 3.1834 -8.6673 -0.1559 29 6 1.4785 -7.2741 -0.2305 30 1 -0.4851 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.5397 -4.8763 -0.8298 33 1 0.6994 -4.9677 0.9406 34 1 2.3825 -5.3135 -2.1401 35 1 3.9036 -5.3336 -1.2038 36 1 1.5865 -6.8951 -3.2591 37 1 3.1236 -7.3325 -4.0760 38 1 2.9604 -9.6399 -3.4061 39 1 1.2439 -9.2415 -3.7230 40 1 1.0923 -11.7157 -2.6776 41 1 -0.3065 -10.6237 -2.8159 42 1 -0.5157 -12.0314 -0.3769 43 1 -1.9565 -13.8661 -0.2897 44 1 -2.4230 -14.6359 -1.7083 45 1 0.5917 -7.1817 -0.8575 46 1 1.2089 -7.6353 0.7619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186819695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:19 Heat of formation + Delta-G solvation = -77.712973 kcal Electronic energy + Delta-G solvation = -29504.079726 eV Core-core repulsion = 25236.092804 eV Total energy + Delta-G solvation = -4267.986922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08511 -40.15220 -38.94156 -37.96253 -35.77473 -34.75055 -33.94215 -33.85858 -32.26882 -31.25889 -30.34298 -28.56671 -27.11418 -26.34923 -24.26851 -23.33632 -21.62438 -21.20778 -20.54739 -19.71100 -19.07483 -18.79170 -17.84470 -17.82332 -17.11883 -16.60314 -16.19237 -15.89734 -15.55210 -15.20822 -15.06515 -14.78884 -14.64872 -14.30869 -14.21089 -13.90460 -13.68753 -13.43727 -13.22619 -13.01073 -12.75846 -12.63871 -12.20209 -12.07628 -11.85264 -11.51795 -11.27254 -11.06875 -10.96188 -10.87882 -10.77221 -10.72629 -10.35798 -10.28420 -10.23995 -10.11860 -9.52261 -9.51850 -9.03012 -8.46652 -8.02600 -7.94098 -6.43411 -3.84297 2.17850 2.19065 2.79463 2.81646 3.14891 3.25689 3.32715 3.87866 3.89861 4.02938 4.10780 4.19889 4.26326 4.47115 4.55769 4.82327 4.91542 4.92096 5.00179 5.02735 5.11335 5.23009 5.24245 5.36817 5.38994 5.62619 5.67846 5.77706 5.81753 5.85762 5.93719 5.95942 6.00158 6.17978 6.25408 6.28669 6.47370 6.50754 7.08780 7.14175 7.20056 7.53127 7.53737 7.71689 8.04422 8.20639 8.59596 9.16278 9.52377 10.03762 10.74364 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002024 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.189894 B =13828.831802 C =14301.424936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.038 3.962 13 N -0.490 5.490 14 C 0.052 3.948 15 C -0.107 4.107 16 H 0.103 0.897 17 C -0.129 4.129 18 C 0.095 3.905 19 N -0.609 5.609 20 C 0.524 3.476 21 O -0.533 6.533 22 C 0.124 3.876 23 N -0.734 5.734 24 C 0.710 3.290 25 N -0.865 5.865 26 O -0.597 6.597 27 C 0.140 3.860 28 H 0.100 0.900 29 C 0.031 3.969 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.409 0.591 43 H 0.399 0.601 44 H 0.416 0.584 45 H 0.043 0.957 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -24.063 -5.517 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.093 4.093 13 N -0.215 5.215 14 C -0.076 4.076 15 C -0.127 4.127 16 H 0.121 0.879 17 C -0.167 4.167 18 C -0.028 4.028 19 N -0.343 5.343 20 C 0.311 3.689 21 O -0.410 6.410 22 C -0.004 4.004 23 N -0.394 5.394 24 C 0.407 3.593 25 N -0.433 5.433 26 O -0.475 6.475 27 C 0.037 3.963 28 H 0.117 0.883 29 C -0.098 4.098 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.247 0.753 43 H 0.227 0.773 44 H 0.248 0.752 45 H 0.062 0.938 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.866 -23.898 -5.413 24.518 hybrid contribution -1.187 0.727 0.031 1.392 sum -2.053 -23.171 -5.382 23.876 Atomic orbital electron populations 1.69621 1.05949 1.28067 1.50652 1.25271 0.95639 0.99751 0.97354 0.85799 0.79704 0.81133 0.77701 1.19205 1.20791 1.20746 1.19746 0.93382 0.82158 1.47463 0.87822 1.41873 1.09196 1.04599 1.64389 1.19690 0.88391 0.84511 0.84590 1.90504 1.13580 1.86951 1.55198 1.22080 0.94040 0.91316 1.01909 1.64514 1.21624 1.00166 1.35165 1.22897 1.00993 0.93666 0.90004 1.23101 1.00060 0.95610 0.93879 0.87916 1.23004 1.01015 0.94541 0.98152 1.22550 1.01302 0.97531 0.81404 1.48442 1.46684 1.30528 1.08647 1.20127 0.78816 0.80932 0.88985 1.90717 1.62078 1.72502 1.15720 1.20850 0.95660 0.90715 0.93157 1.44718 1.50959 1.32432 1.11303 1.15818 0.78736 0.79445 0.85256 1.42924 1.53339 1.36090 1.10963 1.90981 1.69034 1.75537 1.11986 1.22489 0.93281 0.87103 0.93426 0.88255 1.23504 0.95115 0.89912 1.01295 0.91917 0.77507 0.93540 0.89087 0.93590 0.88077 0.90265 0.89210 0.90496 0.90092 0.88404 0.88417 0.75344 0.77295 0.75170 0.93836 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.31 7.40 -10.99 -0.08 10.23 16 11 O -0.58 -15.21 14.08 5.54 0.08 -15.13 16 12 C 0.04 0.69 5.30 -4.98 -0.03 0.66 16 13 N -0.49 -8.12 5.12 -232.29 -1.19 -9.31 16 14 C 0.05 0.79 4.96 -2.89 -0.01 0.78 16 15 C -0.11 -1.14 4.00 -87.90 -0.35 -1.50 16 16 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.13 -1.05 6.35 -24.60 -0.16 -1.21 16 18 C 0.09 0.65 6.71 -2.46 -0.02 0.63 16 19 N -0.61 -5.80 2.96 -161.37 -0.48 -6.28 16 20 C 0.52 5.35 7.72 -10.99 -0.08 5.26 16 21 O -0.53 -6.98 15.68 5.56 0.09 -6.90 16 22 C 0.12 1.03 5.14 -5.19 -0.03 1.00 16 23 N -0.73 -6.13 5.53 -66.42 -0.37 -6.50 16 24 C 0.71 6.63 8.84 -86.92 -0.77 5.87 16 25 N -0.87 -4.46 8.88 27.63 0.25 -4.22 16 26 O -0.60 -7.99 17.18 5.29 0.09 -7.90 16 27 C 0.14 1.61 3.85 -65.52 -0.25 1.36 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 C 0.03 0.42 5.59 -2.06 -0.01 0.41 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 32 H 0.05 0.77 7.99 -51.93 -0.42 0.35 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16 35 H 0.10 1.81 6.96 -51.93 -0.36 1.45 16 36 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.44 7.43 -51.93 -0.39 0.05 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.77 7.84 -51.93 -0.41 0.36 16 42 H 0.41 3.12 7.45 -40.82 -0.30 2.82 16 43 H 0.40 1.02 8.84 -40.82 -0.36 0.66 16 44 H 0.42 1.67 8.93 -40.82 -0.36 1.31 16 45 H 0.04 0.59 7.88 -51.93 -0.41 0.18 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -35.47 377.80 -8.78 -44.25 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.55 Total: 12.74 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -2.03 Total: 15.61 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -1.12 Total: -64.24 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: 0.26 Total: -29.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.47 -8.78 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186819695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.464 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds