Wall clock time and date at job start Sat Apr 11 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48492 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46815 * 299.99585 * 3 2 1 6 6 H 1.48500 * 109.47388 * 59.99310 * 3 2 1 7 7 C 1.38945 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00102 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00011 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00461 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47254 * 174.02446 * 12 10 9 14 14 C 1.47862 * 111.00309 * 300.91904 * 13 12 10 15 15 C 1.53785 * 107.12645 * 212.90549 * 14 13 12 16 16 H 1.09006 * 112.75587 * 239.97173 * 15 14 13 17 17 C 1.54939 * 108.81384 * 113.28513 * 15 14 13 18 18 C 1.55099 * 101.78232 * 214.02284 * 17 15 14 19 19 N 1.47358 * 104.66300 * 37.42589 * 18 17 15 20 20 C 1.34778 * 125.57312 * 154.72387 * 19 18 17 21 21 O 1.21277 * 120.00154 * 179.69778 * 20 19 18 22 22 C 1.50698 * 119.99815 * 359.69387 * 20 19 18 23 23 N 1.46503 * 109.47199 * 180.02562 * 22 20 19 24 24 C 1.34770 * 120.00172 * 179.97438 * 23 22 20 25 25 N 1.34776 * 120.00154 * 179.97438 * 24 23 22 26 26 O 1.21584 * 120.00271 * 0.02562 * 24 23 22 27 27 C 1.46850 * 108.85226 * 334.46337 * 19 18 17 28 28 H 1.08998 * 112.01970 * 238.50273 * 27 19 18 29 29 C 1.48413 * 110.99903 * 183.57809 * 13 12 10 30 30 H 0.97005 * 120.00356 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00176 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46777 * 54.02732 * 12 10 9 33 33 H 1.08996 * 109.46885 * 294.03048 * 12 10 9 34 34 H 1.09001 * 109.90288 * 332.27125 * 14 13 12 35 35 H 1.08997 * 109.90707 * 93.52535 * 14 13 12 36 36 H 1.08992 * 110.94196 * 332.36262 * 17 15 14 37 37 H 1.08998 * 110.94377 * 96.02706 * 17 15 14 38 38 H 1.08997 * 110.52097 * 278.59405 * 18 17 15 39 39 H 1.09003 * 110.34337 * 156.17040 * 18 17 15 40 40 H 1.09001 * 109.47397 * 59.99948 * 22 20 19 41 41 H 1.08999 * 109.47451 * 300.00159 * 22 20 19 42 42 H 0.97000 * 119.99558 * 0.02562 * 23 22 20 43 43 H 0.97001 * 120.00173 * 0.02562 * 25 24 23 44 44 H 0.97000 * 120.00275 * 179.72516 * 25 24 23 45 45 H 1.08999 * 110.58928 * 41.02626 * 29 13 12 46 46 H 1.09001 * 110.71953 * 278.17130 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1919 -5.9758 -0.1409 14 6 2.9657 -5.8548 -1.3951 15 6 3.2515 -7.2825 -1.8903 16 1 4.3175 -7.4968 -1.9664 17 6 2.4815 -7.5155 -3.2145 18 6 2.1157 -9.0190 -3.1077 19 7 1.8044 -9.2268 -1.6824 20 6 1.0030 -10.1908 -1.1874 21 8 0.8206 -10.2727 0.0088 22 6 0.3334 -11.1666 -2.1203 23 7 -0.4782 -12.1068 -1.3432 24 6 -1.1733 -13.0758 -1.9710 25 7 -1.9195 -13.9410 -1.2561 26 8 -1.1266 -13.1700 -3.1823 27 6 2.5151 -8.2158 -0.8891 28 1 3.1834 -8.6673 -0.1559 29 6 1.4785 -7.2741 -0.2305 30 1 -0.4851 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.5397 -4.8763 -0.8298 33 1 0.6994 -4.9677 0.9406 34 1 2.3825 -5.3135 -2.1401 35 1 3.9036 -5.3336 -1.2038 36 1 1.5865 -6.8951 -3.2591 37 1 3.1236 -7.3325 -4.0760 38 1 2.9604 -9.6399 -3.4061 39 1 1.2439 -9.2415 -3.7230 40 1 1.0923 -11.7157 -2.6776 41 1 -0.3065 -10.6237 -2.8159 42 1 -0.5157 -12.0314 -0.3769 43 1 -1.9565 -13.8661 -0.2897 44 1 -2.4230 -14.6359 -1.7083 45 1 0.5917 -7.1817 -0.8575 46 1 1.2089 -7.6353 0.7619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186819695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:18 Heat of formation + Delta-G solvation = -109.558324 kcal Electronic energy + Delta-G solvation = -29505.460644 eV Core-core repulsion = 25236.092804 eV Total energy + Delta-G solvation = -4269.367840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96455 -40.95469 -40.24199 -39.34500 -36.93203 -35.85941 -35.49392 -34.49937 -33.39784 -33.06641 -31.39952 -29.49241 -28.20330 -27.65792 -26.00117 -24.08509 -22.56611 -22.19460 -21.38293 -21.04405 -20.37665 -19.83101 -19.48127 -18.43192 -17.93997 -17.69382 -17.42731 -16.94848 -16.60641 -16.41917 -16.25422 -16.03547 -15.78038 -15.59849 -15.23796 -15.12789 -14.84375 -14.61491 -14.30129 -14.00683 -13.77363 -13.68276 -13.54603 -13.27628 -13.20837 -12.95442 -12.91815 -12.43238 -12.40814 -12.11374 -11.90584 -11.84019 -11.67635 -11.57201 -11.48149 -11.12066 -10.75472 -10.31986 -10.13076 -10.02512 -9.82616 -9.34678 -8.47690 -5.96472 1.35909 1.41031 1.41676 1.47934 1.55820 2.02074 2.11554 2.12914 2.28243 2.82684 3.08506 3.19083 3.35324 3.47425 3.58205 3.63136 3.71484 4.08042 4.13015 4.23346 4.23751 4.29665 4.32338 4.34513 4.41428 4.50268 4.57342 4.66356 4.72122 4.85305 4.94677 5.06282 5.11542 5.14919 5.27348 5.35565 5.40452 5.79554 5.80568 5.90177 6.02568 6.04091 6.37450 6.58475 6.91074 7.00551 7.11375 7.53762 7.59445 8.08893 8.69998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002024 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.189894 B =13828.831802 C =14301.424936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.051 3.949 13 N -0.511 5.511 14 C 0.054 3.946 15 C -0.096 4.096 16 H 0.119 0.881 17 C -0.124 4.124 18 C 0.096 3.904 19 N -0.606 5.606 20 C 0.525 3.475 21 O -0.567 6.567 22 C 0.129 3.871 23 N -0.732 5.732 24 C 0.705 3.295 25 N -0.847 5.847 26 O -0.640 6.640 27 C 0.144 3.856 28 H 0.092 0.908 29 C 0.038 3.962 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.413 0.587 43 H 0.413 0.587 44 H 0.423 0.577 45 H 0.048 0.952 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -25.281 -6.608 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.497 6.497 12 C -0.081 4.081 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.115 4.115 16 H 0.137 0.863 17 C -0.162 4.162 18 C -0.026 4.026 19 N -0.339 5.339 20 C 0.314 3.686 21 O -0.446 6.446 22 C 0.001 3.999 23 N -0.391 5.391 24 C 0.403 3.597 25 N -0.416 5.416 26 O -0.522 6.522 27 C 0.040 3.960 28 H 0.110 0.890 29 C -0.090 4.090 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.251 0.749 43 H 0.244 0.756 44 H 0.257 0.743 45 H 0.066 0.934 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.287 -25.143 -6.487 25.999 hybrid contribution -1.063 1.073 0.428 1.570 sum -2.350 -24.070 -6.059 24.932 Atomic orbital electron populations 1.69683 1.06879 1.29236 1.50440 1.26062 0.96550 1.02481 0.96321 0.84854 0.78068 0.77030 0.78283 1.19674 1.19551 1.19757 1.19702 0.92718 0.83839 1.49723 0.90130 1.41935 1.09274 1.04719 1.65151 1.20588 0.88277 0.85709 0.82486 1.90483 1.15377 1.87744 1.56133 1.21925 0.93856 0.88974 1.03338 1.64431 1.22010 1.00760 1.36390 1.22788 0.98920 0.96346 0.89304 1.23039 1.01371 0.92120 0.95018 0.86294 1.22994 1.00496 0.95406 0.97271 1.22778 1.03260 0.96711 0.79819 1.48461 1.46114 1.29698 1.09656 1.20449 0.78434 0.80992 0.88754 1.90706 1.63240 1.73434 1.17248 1.20869 0.95962 0.90400 0.92629 1.44697 1.50742 1.32224 1.11475 1.15997 0.78989 0.79849 0.84862 1.42777 1.52021 1.35098 1.11686 1.90951 1.70608 1.76729 1.13869 1.22310 0.92655 0.87334 0.93690 0.89005 1.23440 0.95710 0.88793 1.01103 0.91320 0.77139 0.91613 0.87858 0.94444 0.91587 0.91462 0.86952 0.88042 0.87960 0.87097 0.87613 0.74906 0.75602 0.74349 0.93407 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 10 C 0.44 21.19 7.40 87.66 0.65 21.83 16 11 O -0.61 -33.45 14.08 -3.08 -0.04 -33.49 16 12 C 0.05 1.83 5.30 85.56 0.45 2.29 16 13 N -0.51 -17.07 5.12 -888.82 -4.55 -21.62 16 14 C 0.05 1.67 4.96 86.38 0.43 2.10 16 15 C -0.10 -1.92 4.00 -9.03 -0.04 -1.96 16 16 H 0.12 2.02 8.14 -2.38 -0.02 2.01 16 17 C -0.12 -1.70 6.35 31.98 0.20 -1.49 16 18 C 0.10 0.97 6.71 86.93 0.58 1.56 16 19 N -0.61 -10.20 2.96 -782.83 -2.32 -12.51 16 20 C 0.52 9.76 7.72 87.66 0.68 10.44 16 21 O -0.57 -14.30 15.68 -3.02 -0.05 -14.35 16 22 C 0.13 1.86 5.14 85.63 0.44 2.30 16 23 N -0.73 -11.00 5.53 -482.31 -2.67 -13.67 16 24 C 0.71 12.10 8.84 179.06 1.58 13.68 16 25 N -0.85 -7.25 8.88 -184.75 -1.64 -8.89 16 26 O -0.64 -16.33 17.18 -3.98 -0.07 -16.40 16 27 C 0.14 3.15 3.85 46.36 0.18 3.32 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 C 0.04 1.02 5.59 86.61 0.48 1.51 16 30 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 31 H 0.39 19.50 7.90 -92.71 -0.73 18.76 16 32 H 0.07 2.13 7.99 -2.39 -0.02 2.11 16 33 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.04 1.19 6.90 -2.39 -0.02 1.17 16 35 H 0.07 2.48 6.96 -2.39 -0.02 2.46 16 36 H 0.07 1.12 7.53 -2.39 -0.02 1.10 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 0.69 7.43 -2.39 -0.02 0.67 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.39 7.84 -2.39 -0.02 1.37 16 42 H 0.41 5.70 7.45 -92.71 -0.69 5.01 16 43 H 0.41 1.29 8.84 -92.71 -0.82 0.47 16 44 H 0.42 2.69 8.93 -92.71 -0.83 1.86 16 45 H 0.05 1.24 7.88 -2.39 -0.02 1.23 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -78.74 377.80 -5.73 -84.47 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -2.00 Total: 35.00 kcal Atomic # 6 Polarization: 30.42 SS G_CDS: 6.92 Total: 37.34 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -12.52 Total: -137.45 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -0.16 Total: -64.24 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -78.74 -5.73 -84.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186819695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.093 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds