Wall clock time and date at job start Sat Apr 11 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00281 * 2 1 4 4 H 1.48498 * 109.47353 * 270.00397 * 3 2 1 5 5 H 1.48506 * 109.46794 * 30.00143 * 3 2 1 6 6 H 1.48497 * 109.47421 * 149.99955 * 3 2 1 7 7 C 1.38957 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00121 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00241 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99856 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00274 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46843 * 180.02562 * 12 10 9 14 14 C 1.46270 * 110.99370 * 190.00437 * 13 12 10 15 15 C 1.47543 * 114.36993 * 148.55984 * 14 13 12 16 16 C 1.54945 * 109.69350 * 62.23910 * 15 14 13 17 17 N 1.44695 * 109.51501 * 290.43766 * 16 15 14 18 18 C 1.34776 * 118.60125 * 269.15224 * 17 16 15 19 19 O 1.21281 * 120.00272 * 180.02562 * 18 17 16 20 20 C 1.50695 * 120.00030 * 0.02562 * 18 17 16 21 21 H 1.09006 * 110.49207 * 317.30014 * 20 18 17 22 22 C 1.54101 * 110.55348 * 80.00128 * 20 18 17 23 23 N 1.47042 * 103.86492 * 118.59257 * 22 20 18 24 24 C 1.33950 * 109.17937 * 0.02562 * 23 22 20 25 25 O 1.21596 * 123.04099 * 179.97438 * 24 23 22 26 26 N 1.33948 * 113.91417 * 359.97438 * 24 23 22 27 27 C 1.47783 * 122.85173 * 89.15317 * 17 16 15 28 28 C 1.44763 * 110.99970 * 66.51429 * 13 12 10 29 29 H 0.96998 * 119.99950 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00223 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46400 * 60.00585 * 12 10 9 32 32 H 1.08992 * 109.47409 * 300.00588 * 12 10 9 33 33 H 1.08990 * 108.50531 * 27.29190 * 14 13 12 34 34 H 1.09001 * 108.37657 * 269.72763 * 14 13 12 35 35 H 1.09002 * 109.42631 * 182.29532 * 15 14 13 36 36 H 1.09002 * 109.42877 * 302.18666 * 15 14 13 37 37 H 1.09001 * 109.46014 * 50.51052 * 16 15 14 38 38 H 1.09000 * 109.46474 * 170.47737 * 16 15 14 39 39 H 1.09003 * 110.55254 * 237.19650 * 22 20 18 40 40 H 1.09007 * 110.54333 * 359.85639 * 22 20 18 41 41 H 0.96997 * 125.41461 * 180.02562 * 23 22 20 42 42 H 0.97008 * 125.40604 * 179.97438 * 26 24 23 43 43 H 1.09006 * 109.05995 * 197.58000 * 27 17 16 44 44 H 1.08996 * 109.06789 * 78.64472 * 27 17 16 45 45 H 1.09005 * 109.43153 * 337.91568 * 28 13 12 46 46 H 1.08994 * 109.43503 * 97.83368 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9795 0.0005 14 6 1.5168 -7.2519 -0.2361 15 6 2.3289 -8.2533 -0.9534 16 6 3.5770 -8.6150 -0.1095 17 7 4.4811 -7.4858 -0.0752 18 6 5.4358 -7.3948 -1.0221 19 8 6.2075 -6.4592 -1.0172 20 6 5.5445 -8.4555 -2.0870 21 1 5.4230 -9.4473 -1.6514 22 6 4.4992 -8.2194 -3.1944 23 7 5.3087 -8.0072 -4.4035 24 6 6.6067 -8.0988 -4.0857 25 8 7.4997 -7.9646 -4.9001 26 7 6.8320 -8.3517 -2.7898 27 6 4.4033 -6.4275 0.9534 28 6 2.9449 -6.0232 1.2401 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0002 31 1 0.6168 -4.9208 -0.8897 32 1 0.6173 -4.9205 0.8901 33 1 0.6146 -7.0583 -0.8162 34 1 1.2244 -7.6695 0.7273 35 1 1.7327 -9.1502 -1.1219 36 1 2.6461 -7.8435 -1.9123 37 1 3.2688 -8.8657 0.9056 38 1 4.0826 -9.4707 -0.5570 39 1 3.8602 -9.0948 -3.3104 40 1 3.8999 -7.3363 -2.9727 41 1 4.9584 -7.8292 -5.2903 42 1 7.7057 -8.4511 -2.3801 43 1 4.9536 -5.5528 0.6064 44 1 4.8593 -6.7915 1.8740 45 1 2.9268 -5.0394 1.7092 46 1 2.4919 -6.7533 1.9107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196962568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:31 Heat of formation + Delta-G solvation = -50.689006 kcal Electronic energy + Delta-G solvation = -31056.713404 eV Core-core repulsion = 26789.898329 eV Total energy + Delta-G solvation = -4266.815075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58434 -39.95624 -38.69510 -37.41443 -36.31689 -35.15943 -33.86955 -33.18193 -32.81337 -31.27084 -30.12648 -28.71636 -26.80973 -25.80425 -24.44195 -23.78738 -22.31547 -21.89700 -20.67925 -19.43805 -18.94145 -18.13130 -17.90976 -17.74876 -16.60716 -16.37883 -16.10509 -15.67633 -15.61511 -15.13061 -14.86289 -14.61276 -14.43657 -14.24052 -14.08558 -13.94063 -13.71328 -13.52616 -13.49290 -13.03256 -12.85452 -12.34240 -12.31085 -12.22544 -11.63612 -11.54464 -11.48301 -11.31487 -11.00817 -10.90502 -10.70529 -10.40214 -10.38797 -10.21675 -10.14692 -9.51132 -9.48367 -8.98101 -8.60324 -8.46780 -7.99996 -7.95273 -6.42296 -3.82715 2.43108 2.57183 2.88882 3.13888 3.18456 3.27274 3.33334 3.75799 3.84879 3.90573 4.03722 4.19075 4.26230 4.42430 4.56724 4.73273 4.95349 4.99702 5.05384 5.10722 5.14775 5.21919 5.26011 5.32598 5.41110 5.44449 5.53481 5.68764 5.71978 5.75995 5.88315 5.98419 6.03313 6.23963 6.39388 6.56947 6.82346 6.97866 7.18586 7.20762 7.34687 7.36361 7.55435 8.05982 8.16301 8.49049 8.61095 9.18351 9.53746 10.05506 10.75454 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.003123 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.261406 B = 8963.591839 C =10046.230587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.439 3.561 11 O -0.571 6.571 12 C 0.048 3.952 13 N -0.511 5.511 14 C 0.056 3.944 15 C -0.145 4.145 16 C 0.105 3.895 17 N -0.586 5.586 18 C 0.498 3.502 19 O -0.513 6.513 20 C 0.103 3.897 21 H 0.114 0.886 22 C 0.102 3.898 23 N -0.738 5.738 24 C 0.707 3.293 25 O -0.587 6.587 26 N -0.715 5.715 27 C 0.126 3.874 28 C 0.057 3.943 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.432 0.568 42 H 0.433 0.567 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -23.313 0.541 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.225 3.775 11 O -0.454 6.454 12 C -0.083 4.083 13 N -0.235 5.235 14 C -0.072 4.072 15 C -0.184 4.184 16 C -0.019 4.019 17 N -0.319 5.319 18 C 0.282 3.718 19 O -0.387 6.387 20 C -0.007 4.007 21 H 0.131 0.869 22 C -0.024 4.024 23 N -0.401 5.401 24 C 0.406 3.594 25 O -0.465 6.465 26 N -0.377 5.377 27 C 0.004 3.996 28 C -0.073 4.073 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.274 0.726 42 H 0.275 0.725 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.247 -22.483 -0.206 22.518 hybrid contribution -1.026 0.817 0.638 1.459 sum 0.221 -21.666 0.432 21.672 Atomic orbital electron populations 1.69603 1.05929 1.28118 1.50813 1.25238 0.95609 0.99683 0.97354 0.85879 0.79257 0.80853 0.78457 1.20394 1.20967 1.19401 1.19693 0.93359 0.82188 1.47425 0.87922 1.41864 1.09111 1.04610 1.64629 1.19750 0.88532 0.84526 0.84742 1.90561 1.13420 1.86834 1.54614 1.21950 0.93713 0.91173 1.01436 1.60374 1.25855 1.01620 1.35601 1.20985 0.96437 0.90182 0.99566 1.21699 0.97247 0.98903 1.00591 1.21699 0.90815 0.88034 1.01372 1.47556 1.31116 1.24284 1.28961 1.20638 0.81847 0.87051 0.82236 1.90783 1.41934 1.32737 1.73286 1.21912 0.85580 0.99555 0.93680 0.86898 1.22482 0.93307 1.03680 0.82922 1.45055 1.05613 1.77932 1.11507 1.15854 0.83534 0.77178 0.82879 1.90997 1.45616 1.58435 1.51422 1.44821 1.08002 1.77231 1.07670 1.21956 0.97348 0.91193 0.89094 1.22269 0.93360 1.01804 0.89819 0.91920 0.77614 0.89439 0.93454 0.91506 0.94794 0.90050 0.90302 0.90324 0.90457 0.88850 0.88513 0.72573 0.72475 0.87657 0.92455 0.89074 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 9.87 7.15 -10.99 -0.08 9.79 16 11 O -0.57 -14.85 14.49 5.55 0.08 -14.77 16 12 C 0.05 0.78 5.25 -4.97 -0.03 0.75 16 13 N -0.51 -7.18 3.90 -241.04 -0.94 -8.12 16 14 C 0.06 0.53 4.97 -6.80 -0.03 0.49 16 15 C -0.15 -0.96 5.77 -28.34 -0.16 -1.12 16 16 C 0.11 0.69 5.17 -3.98 -0.02 0.67 16 17 N -0.59 -6.57 2.53 -172.20 -0.44 -7.00 16 18 C 0.50 6.53 6.76 -10.99 -0.07 6.46 16 19 O -0.51 -9.61 15.84 5.56 0.09 -9.52 16 20 C 0.10 0.94 3.27 -68.21 -0.22 0.71 16 21 H 0.11 0.58 6.39 -51.93 -0.33 0.25 16 22 C 0.10 0.82 5.88 -3.17 -0.02 0.80 16 23 N -0.74 -7.68 6.37 -64.70 -0.41 -8.10 16 24 C 0.71 9.88 8.92 -88.40 -0.79 9.09 16 25 O -0.59 -10.67 18.05 5.28 0.10 -10.57 16 26 N -0.72 -8.25 5.60 -59.33 -0.33 -8.59 16 27 C 0.13 1.76 6.46 -2.80 -0.02 1.74 16 28 C 0.06 0.79 4.62 -4.43 -0.02 0.77 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 31 H 0.09 1.28 7.75 -51.93 -0.40 0.87 16 32 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 33 H 0.07 0.59 7.44 -51.93 -0.39 0.21 16 34 H 0.03 0.29 7.17 -51.93 -0.37 -0.09 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.60 4.66 -51.93 -0.24 0.36 16 37 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.08 0.29 5.78 -51.93 -0.30 -0.01 16 39 H 0.09 0.38 8.11 -51.93 -0.42 -0.04 16 40 H 0.10 0.95 6.08 -51.93 -0.32 0.64 16 41 H 0.43 3.72 8.96 -40.82 -0.37 3.36 16 42 H 0.43 4.61 8.96 -40.82 -0.37 4.24 16 43 H 0.11 2.00 6.96 -51.93 -0.36 1.64 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.56 6.25 -51.93 -0.32 1.23 16 46 H 0.03 0.36 7.13 -51.93 -0.37 -0.01 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -38.23 362.89 -8.53 -46.76 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.08 Total: 13.57 kcal Atomic # 6 Polarization: 24.02 SS G_CDS: -1.71 Total: 22.31 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.45 Total: -69.42 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: 0.26 Total: -34.87 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.23 -8.53 -46.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196962568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.930 kcal (2) G-P(sol) polarization free energy of solvation -38.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds