Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99638 * 2 1 4 4 H 1.48499 * 109.46492 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46925 * 299.99483 * 3 2 1 6 6 H 1.48494 * 109.46998 * 59.99797 * 3 2 1 7 7 C 1.38811 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99677 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00417 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00028 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46075 * 205.00452 * 10 9 7 12 12 C 1.53186 * 109.31534 * 178.62858 * 11 10 9 13 13 N 1.46926 * 108.77396 * 54.63265 * 12 11 10 14 14 C 1.34780 * 120.62707 * 126.37270 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 N 1.46507 * 109.47485 * 179.97438 * 18 17 16 20 20 C 1.36372 * 125.96274 * 269.69132 * 19 18 17 21 21 O 1.35624 * 125.99229 * 0.03873 * 20 19 18 22 22 N 1.30906 * 108.01815 * 179.88554 * 20 19 18 23 23 N 1.40118 * 107.94289 * 0.37476 * 22 20 19 24 24 C 1.30903 * 107.93818 * 359.76337 * 23 22 20 25 25 O 1.35631 * 125.98876 * 179.97438 * 24 23 22 26 26 C 1.46921 * 118.74177 * 306.64666 * 13 12 11 27 27 C 1.52760 * 109.00903 * 53.30762 * 26 13 12 28 28 H 0.96990 * 120.00421 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99704 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46282 * 324.97258 * 10 9 7 31 31 H 1.09008 * 109.49904 * 58.67449 * 11 10 9 32 32 H 1.09000 * 109.52420 * 298.59952 * 11 10 9 33 33 H 1.09005 * 109.58747 * 294.84888 * 12 11 10 34 34 H 1.09001 * 109.70993 * 174.49512 * 12 11 10 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 38 38 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 39 39 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 40 40 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 41 41 H 0.96701 * 114.00410 * 89.99214 * 21 20 19 42 42 H 0.96707 * 113.99217 * 270.02341 * 25 24 23 43 43 H 1.08996 * 109.58649 * 173.14582 * 26 13 12 44 44 H 1.09004 * 109.58204 * 293.57028 * 26 13 12 45 45 H 1.09000 * 109.56394 * 185.56047 * 27 26 13 46 46 H 1.08995 * 109.36180 * 65.49907 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.1801 -4.7525 -0.6072 12 6 1.9615 -6.0698 -0.6370 13 7 2.4417 -6.3655 0.7198 14 6 2.1733 -7.5521 1.2997 15 8 1.5293 -8.3877 0.7014 16 6 2.6724 -7.8402 2.6922 17 6 2.2332 -9.2447 3.1110 18 6 2.7403 -9.5375 4.5244 19 7 2.3193 -10.8822 4.9256 20 6 1.1605 -11.1993 5.5708 21 8 0.1960 -10.3256 5.9526 22 7 1.1407 -12.4954 5.7541 23 7 2.3228 -13.0249 5.2197 24 6 3.0205 -12.0343 4.7244 25 8 4.2293 -12.1360 4.1177 26 6 3.2149 -5.3408 1.4345 27 6 2.4242 -4.0338 1.4390 28 1 -0.4850 0.8399 -0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.9681 -3.5507 -0.5890 31 1 0.9005 -4.4723 -1.6228 32 1 0.2811 -4.8763 -0.0034 33 1 2.8114 -5.9753 -1.3129 34 1 1.3112 -6.8753 -0.9781 35 1 3.7606 -7.7797 2.7079 36 1 2.2577 -7.1084 3.3855 37 1 1.1449 -9.3049 3.0954 38 1 2.6474 -9.9768 2.4178 39 1 3.8286 -9.4775 4.5396 40 1 2.3263 -8.8055 5.2179 41 1 -0.4880 -10.1783 5.2851 42 1 4.9804 -12.0579 4.7219 43 1 3.3893 -5.6643 2.4606 44 1 4.1691 -5.1857 0.9309 45 1 3.0301 -3.2421 1.8796 46 1 1.5138 -4.1642 2.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201378929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = -15.452232 kcal Electronic energy + Delta-G solvation = -29102.985807 eV Core-core repulsion = 24837.698713 eV Total energy + Delta-G solvation = -4265.287094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67480 -40.26994 -38.60703 -37.67342 -37.51058 -36.07642 -34.60095 -32.98498 -32.05792 -30.93945 -29.98779 -29.42380 -27.63072 -24.98976 -23.49075 -23.18741 -23.08662 -22.38451 -21.99266 -20.33754 -19.35415 -19.16734 -18.79318 -17.46209 -17.15364 -17.13264 -16.70266 -16.20940 -15.88937 -15.66524 -14.94132 -14.78166 -14.51795 -13.97066 -13.86760 -13.63839 -13.50586 -13.45031 -13.33413 -13.06382 -12.82069 -12.71497 -12.39488 -12.17918 -12.02698 -11.68155 -11.64695 -11.44599 -11.06590 -10.97602 -10.92259 -10.91061 -10.59250 -10.44941 -10.28823 -9.93769 -9.86728 -9.85383 -9.76075 -9.00905 -8.63583 -7.07575 -5.86514 -3.16270 1.10000 1.29955 1.81932 2.51205 2.80484 2.90651 3.35313 3.35563 3.40907 3.43618 3.92774 4.09459 4.39163 4.49068 4.59689 4.65281 4.73213 4.82525 4.84396 4.92821 5.11253 5.18631 5.22688 5.24017 5.28865 5.43674 5.51479 5.52086 5.61595 5.65881 5.70526 5.83283 5.88987 6.11353 6.24413 6.27753 6.39647 6.48960 6.57937 6.77324 6.87592 6.91872 7.36980 7.47622 7.59885 8.07363 8.31529 9.42920 9.99831 10.34233 11.35958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.001896 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.080359 B =14763.737441 C =15085.158961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.115 3.885 13 N -0.605 5.605 14 C 0.514 3.486 15 O -0.550 6.550 16 C -0.137 4.137 17 C -0.118 4.118 18 C 0.100 3.900 19 N -0.510 5.510 20 C 0.408 3.592 21 O -0.436 6.436 22 N -0.297 5.297 23 N -0.298 5.298 24 C 0.407 3.593 25 O -0.434 6.434 26 C 0.107 3.893 27 C -0.152 4.152 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.415 0.585 42 H 0.411 0.589 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -19.365 9.674 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.178 4.178 12 C -0.007 4.007 13 N -0.338 5.338 14 C 0.302 3.698 15 O -0.428 6.428 16 C -0.177 4.177 17 C -0.157 4.157 18 C -0.023 4.023 19 N -0.230 5.230 20 C 0.098 3.902 21 O -0.237 6.237 22 N -0.142 5.142 23 N -0.142 5.142 24 C 0.097 3.903 25 O -0.234 6.234 26 C -0.017 4.017 27 C -0.193 4.193 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.274 0.726 42 H 0.269 0.731 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.180 -21.088 9.766 24.637 hybrid contribution 0.648 2.776 -0.401 2.879 sum 8.828 -18.312 9.365 22.382 Atomic orbital electron populations 1.69667 1.05142 1.25666 1.57447 1.24768 0.95518 0.97779 1.02865 0.86132 0.78749 0.84126 0.77243 1.20545 1.21830 1.21858 1.19262 0.90981 0.84052 1.42953 0.91103 1.42441 1.05821 0.99701 1.88485 1.20159 0.94481 0.86131 0.92392 1.22205 0.99171 0.94084 1.02326 1.21628 0.98780 0.98095 0.82233 1.48193 1.53953 1.14702 1.16933 1.20437 0.79850 0.81555 0.87976 1.90696 1.40613 1.46160 1.65372 1.21572 1.03088 0.97805 0.95267 1.21670 1.02654 0.96964 0.94436 1.22041 1.02055 0.80506 0.97747 1.47154 1.18839 1.09793 1.47178 1.21350 0.85139 0.88833 0.94836 1.84929 1.35207 1.60422 1.43115 1.78385 1.12363 1.02365 1.21051 1.78372 1.01101 1.19930 1.14825 1.21324 0.89681 0.82608 0.96715 1.84994 1.10994 1.92875 1.34508 1.21804 0.94737 0.88811 0.96303 1.22609 1.00088 0.94730 1.01918 0.93477 0.78253 0.93400 0.90507 0.91874 0.91547 0.89389 0.88427 0.88239 0.90573 0.89969 0.88302 0.87836 0.72610 0.73064 0.90496 0.91361 0.90511 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -16.93 5.12 -53.39 -0.27 -17.20 16 10 C 0.18 3.16 2.73 -67.89 -0.19 2.97 16 11 C -0.14 -2.13 5.55 -26.61 -0.15 -2.28 16 12 C 0.12 1.51 6.44 -3.71 -0.02 1.48 16 13 N -0.60 -7.21 2.98 -173.03 -0.52 -7.72 16 14 C 0.51 6.02 7.70 -10.98 -0.08 5.93 16 15 O -0.55 -8.47 15.39 5.56 0.09 -8.39 16 16 C -0.14 -0.93 4.05 -27.88 -0.11 -1.04 16 17 C -0.12 -0.81 4.83 -26.74 -0.13 -0.94 16 18 C 0.10 0.47 6.01 -4.04 -0.02 0.44 16 19 N -0.51 -3.87 2.76 -120.06 -0.33 -4.20 16 20 C 0.41 3.76 9.15 -88.81 -0.81 2.94 16 21 O -0.44 -2.90 13.57 -18.57 -0.25 -3.15 16 22 N -0.30 -3.65 12.72 29.65 0.38 -3.27 16 23 N -0.30 -3.61 12.72 29.65 0.38 -3.23 16 24 C 0.41 3.62 9.15 -88.81 -0.81 2.81 16 25 O -0.43 -2.58 13.58 -18.59 -0.25 -2.83 16 26 C 0.11 1.12 6.31 -3.94 -0.02 1.10 16 27 C -0.15 -2.24 5.64 -26.83 -0.15 -2.39 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.38 9.73 7.80 -40.82 -0.32 9.41 16 30 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 35 H 0.10 0.46 7.95 -51.93 -0.41 0.04 16 36 H 0.10 0.54 7.68 -51.93 -0.40 0.14 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.41 0.89 9.06 45.56 0.41 1.30 16 42 H 0.41 0.11 9.06 45.56 0.41 0.52 16 43 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -37.18 385.81 -7.19 -44.37 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.16 Total: 5.72 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.76 Total: 4.12 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.36 Total: -62.11 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.42 Total: -14.37 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.18 -7.19 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201378929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.921 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds