Wall clock time and date at job start Sat Apr 11 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99638 * 2 1 4 4 H 1.48499 * 109.46492 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46925 * 299.99483 * 3 2 1 6 6 H 1.48494 * 109.46998 * 59.99797 * 3 2 1 7 7 C 1.38811 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99677 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00417 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00028 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46075 * 205.00452 * 10 9 7 12 12 C 1.53186 * 109.31534 * 178.62858 * 11 10 9 13 13 N 1.46926 * 108.77396 * 54.63265 * 12 11 10 14 14 C 1.34780 * 120.62707 * 126.37270 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 N 1.46507 * 109.47485 * 179.97438 * 18 17 16 20 20 C 1.36372 * 125.96274 * 269.69132 * 19 18 17 21 21 O 1.35624 * 125.99229 * 0.03873 * 20 19 18 22 22 N 1.30906 * 108.01815 * 179.88554 * 20 19 18 23 23 N 1.40118 * 107.94289 * 0.37476 * 22 20 19 24 24 C 1.30903 * 107.93818 * 359.76337 * 23 22 20 25 25 O 1.35631 * 125.98876 * 179.97438 * 24 23 22 26 26 C 1.46921 * 118.74177 * 306.64666 * 13 12 11 27 27 C 1.52760 * 109.00903 * 53.30762 * 26 13 12 28 28 H 0.96990 * 120.00421 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99704 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46282 * 324.97258 * 10 9 7 31 31 H 1.09008 * 109.49904 * 58.67449 * 11 10 9 32 32 H 1.09000 * 109.52420 * 298.59952 * 11 10 9 33 33 H 1.09005 * 109.58747 * 294.84888 * 12 11 10 34 34 H 1.09001 * 109.70993 * 174.49512 * 12 11 10 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 38 38 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 39 39 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 40 40 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 41 41 H 0.96701 * 114.00410 * 89.99214 * 21 20 19 42 42 H 0.96707 * 113.99217 * 270.02341 * 25 24 23 43 43 H 1.08996 * 109.58649 * 173.14582 * 26 13 12 44 44 H 1.09004 * 109.58204 * 293.57028 * 26 13 12 45 45 H 1.09000 * 109.56394 * 185.56047 * 27 26 13 46 46 H 1.08995 * 109.36180 * 65.49907 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.1801 -4.7525 -0.6072 12 6 1.9615 -6.0698 -0.6370 13 7 2.4417 -6.3655 0.7198 14 6 2.1733 -7.5521 1.2997 15 8 1.5293 -8.3877 0.7014 16 6 2.6724 -7.8402 2.6922 17 6 2.2332 -9.2447 3.1110 18 6 2.7403 -9.5375 4.5244 19 7 2.3193 -10.8822 4.9256 20 6 1.1605 -11.1993 5.5708 21 8 0.1960 -10.3256 5.9526 22 7 1.1407 -12.4954 5.7541 23 7 2.3228 -13.0249 5.2197 24 6 3.0205 -12.0343 4.7244 25 8 4.2293 -12.1360 4.1177 26 6 3.2149 -5.3408 1.4345 27 6 2.4242 -4.0338 1.4390 28 1 -0.4850 0.8399 -0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.9681 -3.5507 -0.5890 31 1 0.9005 -4.4723 -1.6228 32 1 0.2811 -4.8763 -0.0034 33 1 2.8114 -5.9753 -1.3129 34 1 1.3112 -6.8753 -0.9781 35 1 3.7606 -7.7797 2.7079 36 1 2.2577 -7.1084 3.3855 37 1 1.1449 -9.3049 3.0954 38 1 2.6474 -9.9768 2.4178 39 1 3.8286 -9.4775 4.5396 40 1 2.3263 -8.8055 5.2179 41 1 -0.4880 -10.1783 5.2851 42 1 4.9804 -12.0579 4.7219 43 1 3.3893 -5.6643 2.4606 44 1 4.1691 -5.1857 0.9309 45 1 3.0301 -3.2421 1.8796 46 1 1.5138 -4.1642 2.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201378929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:33 Heat of formation + Delta-G solvation = -49.497770 kcal Electronic energy + Delta-G solvation = -29104.462132 eV Core-core repulsion = 24837.698713 eV Total energy + Delta-G solvation = -4266.763419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.29684 -41.22812 -39.11418 -38.83395 -38.03041 -36.67552 -36.12461 -33.98097 -33.41426 -32.00566 -31.00591 -30.67226 -28.33189 -26.45867 -24.54482 -24.30179 -23.82277 -23.32960 -22.64220 -21.51733 -20.08512 -19.73344 -19.60946 -19.03568 -18.25605 -17.74041 -17.38780 -16.90370 -16.69626 -16.64958 -16.34018 -15.56973 -15.47181 -15.39357 -15.06176 -14.96518 -14.63365 -14.32040 -13.98744 -13.84659 -13.65389 -13.34484 -13.26548 -13.13296 -13.05818 -12.87200 -12.84078 -12.60827 -12.33372 -12.14272 -12.09562 -11.99484 -11.93816 -11.69059 -11.49874 -11.29777 -11.08927 -10.94933 -10.74213 -10.54679 -9.65265 -8.99961 -7.93120 -5.21666 0.52725 0.75149 1.15851 1.48756 1.49343 1.58923 1.64419 2.04042 2.23442 2.57110 2.90006 3.40345 3.45558 3.52051 3.82303 3.86753 3.90484 4.05989 4.08608 4.15584 4.20685 4.27171 4.36531 4.39423 4.41728 4.46416 4.62592 4.68508 4.69940 4.83154 4.85547 4.88293 5.03408 5.04705 5.10243 5.15847 5.32465 5.35354 5.51462 5.56261 5.65749 6.24814 6.28813 6.46829 6.48105 6.81691 7.18353 7.34740 8.11167 8.33200 9.30754 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.001896 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.080359 B =14763.737441 C =15085.158961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.299 1.299 6 H -0.296 1.296 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.171 3.829 11 C -0.128 4.128 12 C 0.122 3.878 13 N -0.608 5.608 14 C 0.507 3.493 15 O -0.594 6.594 16 C -0.128 4.128 17 C -0.111 4.111 18 C 0.102 3.898 19 N -0.505 5.505 20 C 0.416 3.584 21 O -0.436 6.436 22 N -0.344 5.344 23 N -0.346 5.346 24 C 0.419 3.581 25 O -0.434 6.434 26 C 0.115 3.885 27 C -0.142 4.142 28 H 0.249 0.751 29 H 0.369 0.631 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.433 0.567 42 H 0.436 0.564 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.818 -19.252 10.931 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.379 5.379 10 C 0.063 3.937 11 C -0.167 4.167 12 C -0.002 4.002 13 N -0.340 5.340 14 C 0.297 3.703 15 O -0.475 6.475 16 C -0.168 4.168 17 C -0.150 4.150 18 C -0.020 4.020 19 N -0.224 5.224 20 C 0.105 3.895 21 O -0.239 6.239 22 N -0.189 5.189 23 N -0.190 5.190 24 C 0.108 3.892 25 O -0.238 6.238 26 C -0.008 4.008 27 C -0.183 4.183 28 H 0.057 0.943 29 H 0.200 0.800 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.296 0.704 42 H 0.299 0.701 43 H 0.138 0.862 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.223 -20.996 11.036 26.241 hybrid contribution -0.254 2.704 -0.871 2.852 sum 10.969 -18.293 10.166 23.628 Atomic orbital electron populations 1.69827 1.06720 1.25803 1.60051 1.25560 0.96300 1.01135 1.04268 0.85113 0.78496 0.80063 0.76348 1.18565 1.22673 1.22364 1.19667 0.91527 0.84988 1.40089 0.90105 1.42695 1.05382 1.01152 1.88664 1.20452 0.94128 0.84467 0.94684 1.22049 0.98606 0.94805 1.01213 1.21442 0.98847 0.96010 0.83859 1.48291 1.54017 1.15344 1.16392 1.21358 0.78799 0.80622 0.89479 1.90687 1.42536 1.47476 1.66845 1.21638 1.05180 0.98005 0.91976 1.21546 1.01501 0.96613 0.95358 1.22267 1.04012 0.79259 0.96434 1.47211 1.18101 1.10538 1.46574 1.21373 0.85752 0.88524 0.93875 1.84901 1.35375 1.59556 1.44105 1.78250 1.13312 1.04247 1.23082 1.78241 1.01950 1.21756 1.17096 1.21344 0.90186 0.82528 0.95109 1.84970 1.10817 1.92796 1.35206 1.21875 0.93934 0.86012 0.98931 1.22375 1.00122 0.97073 0.98737 0.94255 0.79966 0.93393 0.91547 0.93296 0.90100 0.90372 0.84876 0.85769 0.92385 0.92340 0.85143 0.85843 0.70429 0.70092 0.86159 0.89684 0.91332 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 3 Si 0.97 44.21 29.55 68.60 2.03 46.24 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -11.97 9.93 84.03 0.83 -11.13 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -34.78 5.12 -322.82 -1.65 -36.44 16 10 C 0.17 5.87 2.73 45.02 0.12 6.00 16 11 C -0.13 -3.90 5.55 30.67 0.17 -3.73 16 12 C 0.12 3.03 6.44 86.36 0.56 3.59 16 13 N -0.61 -12.75 2.98 -819.75 -2.44 -15.19 16 14 C 0.51 10.50 7.70 87.66 0.67 11.18 16 15 O -0.59 -17.78 15.39 -3.03 -0.05 -17.82 16 16 C -0.13 -1.15 4.05 29.85 0.12 -1.03 16 17 C -0.11 -1.19 4.83 30.59 0.15 -1.05 16 18 C 0.10 0.54 6.01 86.38 0.52 1.06 16 19 N -0.50 -6.58 2.76 -755.18 -2.08 -8.66 16 20 C 0.42 7.21 9.15 179.72 1.65 8.85 16 21 O -0.44 -5.10 13.57 -89.36 -1.21 -6.31 16 22 N -0.34 -8.53 12.72 -173.66 -2.21 -10.74 16 23 N -0.35 -8.40 12.72 -173.66 -2.21 -10.61 16 24 C 0.42 6.86 9.15 179.72 1.65 8.51 16 25 O -0.43 -4.12 13.58 -89.44 -1.21 -5.33 16 26 C 0.11 1.92 6.31 86.22 0.54 2.46 16 27 C -0.14 -3.86 5.64 30.53 0.17 -3.69 16 28 H 0.25 14.49 8.31 -92.72 -0.77 13.72 16 29 H 0.37 19.25 7.80 -92.71 -0.72 18.53 16 30 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.08 2.14 7.00 -2.39 -0.02 2.12 16 35 H 0.13 0.35 7.95 -2.39 -0.02 0.33 16 36 H 0.12 0.61 7.68 -2.39 -0.02 0.59 16 37 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 38 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 39 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.43 1.25 9.06 -74.06 -0.67 0.57 16 42 H 0.44 -1.11 9.06 -74.05 -0.67 -1.78 16 43 H 0.12 1.05 5.93 -2.39 -0.01 1.03 16 44 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -85.21 385.81 -4.16 -89.37 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -1.02 Total: 16.31 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 7.62 Total: 17.04 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -10.31 Total: -139.49 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -2.47 Total: -29.46 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -85.21 -4.16 -89.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201378929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.874 kcal (2) G-P(sol) polarization free energy of solvation -85.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds