Wall clock time and date at job start Sat Apr 11 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.53033 * 109.45912 * 275.06841 * 14 13 12 16 16 C 1.53196 * 109.31022 * 178.61600 * 15 14 13 17 17 N 1.46927 * 108.77680 * 54.63304 * 16 15 14 18 18 C 1.34776 * 120.62812 * 126.40946 * 17 16 15 19 19 O 1.21286 * 119.99735 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00308 * 359.97438 * 18 17 16 21 21 H 1.08997 * 110.48829 * 317.29506 * 20 18 17 22 22 C 1.54107 * 110.54828 * 79.99665 * 20 18 17 23 23 N 1.47053 * 103.86256 * 118.59707 * 22 20 18 24 24 C 1.33947 * 109.17977 * 359.97438 * 23 22 20 25 25 O 1.21590 * 123.04438 * 180.02562 * 24 23 22 26 26 N 1.33952 * 113.91762 * 0.02562 * 24 23 22 27 27 C 1.46926 * 118.73799 * 306.39238 * 17 16 15 28 28 C 1.53039 * 109.45869 * 154.99819 * 14 13 12 29 29 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 32 32 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 33 33 H 1.00895 * 110.99935 * 56.04274 * 13 12 10 34 34 H 1.09000 * 109.45905 * 35.03062 * 14 13 12 35 35 H 1.09000 * 109.49824 * 298.56094 * 15 14 13 36 36 H 1.08998 * 109.50165 * 58.66655 * 15 14 13 37 37 H 1.08998 * 109.58852 * 294.84571 * 16 15 14 38 38 H 1.09006 * 109.70392 * 174.49007 * 16 15 14 39 39 H 1.09005 * 110.54818 * 237.18987 * 22 20 18 40 40 H 1.08997 * 110.54994 * 359.85381 * 22 20 18 41 41 H 0.97002 * 125.41042 * 180.02562 * 23 22 20 42 42 H 0.96995 * 125.40959 * 180.02562 * 26 24 23 43 43 H 1.08995 * 109.58450 * 293.81883 * 27 17 16 44 44 H 1.08998 * 109.70065 * 173.46419 * 27 17 16 45 45 H 1.09000 * 109.49679 * 301.33642 * 28 14 13 46 46 H 1.09003 * 109.49706 * 61.43123 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 6 1.1425 -7.6641 1.4211 16 6 0.3821 -8.9939 1.4084 17 7 1.1870 -9.9921 0.6911 18 6 1.4863 -11.1741 1.2653 19 8 2.1512 -11.9900 0.6626 20 6 0.9950 -11.4820 2.6563 21 1 1.1146 -10.6137 3.3041 22 6 -0.4783 -11.9327 2.6221 23 7 -0.4409 -13.3009 3.1597 24 6 0.8242 -13.6200 3.4630 25 8 1.1431 -14.6977 3.9270 26 7 1.7062 -12.6444 3.2091 27 6 1.6590 -9.6774 -0.6642 28 6 2.4050 -8.3399 -0.6283 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6165 -4.9246 0.8846 32 1 0.6178 -4.9168 -0.8953 33 1 2.8328 -5.9158 0.7732 34 1 0.5856 -7.1864 -0.6044 35 1 2.0561 -7.7730 2.0055 36 1 0.5158 -6.8909 1.8655 37 1 -0.5742 -8.8633 0.9020 38 1 0.2110 -9.3292 2.4314 39 1 -1.0899 -11.2895 3.2550 40 1 -0.8553 -11.9312 1.5994 41 1 -1.2100 -13.8806 3.2754 42 1 2.6622 -12.6966 3.3645 43 1 0.8068 -9.6024 -1.3397 44 1 2.3318 -10.4619 -1.0105 45 1 2.6769 -8.0477 -1.6426 46 1 3.3068 -8.4424 -0.0246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202231894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:39 Heat of formation + Delta-G solvation = -110.385568 kcal Electronic energy + Delta-G solvation = -29185.063002 eV Core-core repulsion = 24915.659290 eV Total energy + Delta-G solvation = -4269.403712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46532 -40.88646 -40.11743 -38.84064 -37.39165 -36.33414 -35.74092 -34.04507 -33.28130 -32.78612 -31.84790 -30.13391 -28.27184 -26.37565 -25.22224 -24.29653 -23.77171 -22.84580 -21.82833 -21.11557 -20.33150 -19.84330 -18.97981 -18.69182 -17.70519 -17.42432 -17.10538 -16.78025 -16.56524 -16.35042 -16.12012 -16.04519 -15.45752 -15.35319 -15.29960 -15.14232 -15.04708 -14.63378 -14.57173 -13.99429 -13.81566 -13.69401 -13.50249 -13.46023 -13.12666 -13.05019 -12.83817 -12.55277 -12.41164 -12.16012 -12.11621 -11.81324 -11.59307 -11.50824 -11.47680 -11.31824 -10.55379 -10.31042 -9.98868 -9.84527 -9.73920 -9.19234 -8.44821 -5.92998 1.35190 1.40909 1.43386 1.53466 1.64554 1.89876 2.09230 2.11387 2.30714 2.95401 3.00054 3.23049 3.25575 3.32012 3.55372 3.77263 3.90429 4.02284 4.10307 4.19085 4.32320 4.38206 4.39876 4.51099 4.53865 4.61183 4.61564 4.66718 4.74657 4.81929 4.87080 4.94732 5.07928 5.24082 5.32050 5.43013 5.53663 5.87631 5.95420 6.17732 6.19635 6.24352 6.36201 6.46791 6.63367 7.02994 7.15539 7.49384 7.60078 8.16009 8.72046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.001776 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.513923 B =15760.923447 C =16119.254753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.628 6.628 12 C 0.069 3.931 13 N -0.683 5.683 14 C 0.089 3.911 15 C -0.165 4.165 16 C 0.106 3.894 17 N -0.598 5.598 18 C 0.502 3.498 19 O -0.577 6.577 20 C 0.102 3.898 21 H 0.156 0.844 22 C 0.104 3.896 23 N -0.729 5.729 24 C 0.694 3.306 25 O -0.640 6.640 26 N -0.717 5.717 27 C 0.117 3.883 28 C -0.114 4.114 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.342 0.658 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.096 0.904 41 H 0.441 0.559 42 H 0.433 0.567 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 -19.666 5.428 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.514 6.514 12 C -0.063 4.063 13 N -0.314 5.314 14 C -0.021 4.021 15 C -0.205 4.205 16 C -0.016 4.016 17 N -0.331 5.331 18 C 0.288 3.712 19 O -0.456 6.456 20 C -0.007 4.007 21 H 0.173 0.827 22 C -0.020 4.020 23 N -0.392 5.392 24 C 0.393 3.607 25 O -0.522 6.522 26 N -0.377 5.377 27 C -0.006 4.006 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.162 0.838 40 H 0.114 0.886 41 H 0.285 0.715 42 H 0.275 0.725 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.666 -20.398 4.632 22.641 hybrid contribution 0.286 0.792 0.648 1.063 sum -8.379 -19.605 5.281 21.965 Atomic orbital electron populations 1.69647 1.06653 1.29301 1.50289 1.25971 0.96542 1.02224 0.96374 0.85042 0.77814 0.76962 0.78847 1.19987 1.19487 1.19759 1.19596 0.92639 0.84193 1.49976 0.90561 1.41925 1.09353 1.04661 1.65099 1.21064 0.88284 0.86400 0.82006 1.90502 1.16165 1.88048 1.56708 1.21548 0.93915 0.87560 1.03311 1.60130 1.18972 1.00919 1.51399 1.21678 0.96807 0.87353 0.96222 1.22674 1.01803 0.98547 0.97459 1.22119 0.94206 0.86166 0.99131 1.48231 1.52487 1.15580 1.16765 1.21228 0.79801 0.81486 0.88657 1.90749 1.40917 1.48551 1.65389 1.22229 0.93342 0.92707 0.92463 0.82736 1.22634 0.92921 0.83508 1.02956 1.45040 1.07398 1.18278 1.68452 1.16201 0.83010 0.83177 0.78360 1.90963 1.81717 1.25260 1.54244 1.44918 1.10452 1.15029 1.67341 1.21581 0.99614 0.96216 0.83194 1.21795 0.98208 0.93334 1.01989 0.91310 0.76847 0.90761 0.87793 0.83885 0.88777 0.91844 0.89147 0.87792 0.86417 0.83826 0.88553 0.71537 0.72531 0.89135 0.90859 0.90739 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.63 13.05 21.66 0.28 -47.35 16 2 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 3 Si 0.99 41.74 29.55 68.60 2.03 43.77 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 9 N -0.57 -27.82 5.29 -306.98 -1.62 -29.44 16 10 C 0.43 19.31 7.82 87.66 0.69 20.00 16 11 O -0.63 -33.51 15.78 -3.07 -0.05 -33.56 16 12 C 0.07 1.99 5.96 85.56 0.51 2.50 16 13 N -0.68 -18.02 5.87 -495.44 -2.91 -20.93 16 14 C 0.09 1.43 2.43 44.94 0.11 1.54 16 15 C -0.17 -1.61 5.33 30.67 0.16 -1.45 16 16 C 0.11 0.38 6.19 86.36 0.53 0.92 16 17 N -0.60 -6.26 2.97 -818.90 -2.43 -8.70 16 18 C 0.50 7.31 6.82 87.66 0.60 7.91 16 19 O -0.58 -14.68 15.98 -3.05 -0.05 -14.73 16 20 C 0.10 0.81 3.17 44.51 0.14 0.95 16 21 H 0.16 0.13 6.76 -2.39 -0.02 0.11 16 22 C 0.10 0.33 7.25 86.65 0.63 0.95 16 23 N -0.73 -7.72 6.37 -477.33 -3.04 -10.76 16 24 C 0.69 14.16 8.92 179.57 1.60 15.76 16 25 O -0.64 -19.78 18.05 -4.00 -0.07 -19.86 16 26 N -0.72 -11.24 5.60 -460.33 -2.58 -13.82 16 27 C 0.12 1.63 6.43 86.36 0.56 2.19 16 28 C -0.11 -1.96 5.69 30.67 0.17 -1.78 16 29 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 30 H 0.40 18.04 7.90 -92.71 -0.73 17.31 16 31 H 0.07 1.71 7.41 -2.38 -0.02 1.70 16 32 H 0.10 2.67 8.06 -2.39 -0.02 2.65 16 33 H 0.34 9.91 8.18 -89.70 -0.73 9.17 16 34 H 0.09 1.28 7.80 -2.39 -0.02 1.26 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.78 7.42 -2.39 -0.02 0.77 16 37 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.12 -0.32 5.39 -2.38 -0.01 -0.33 16 39 H 0.14 -0.76 8.14 -2.38 -0.02 -0.77 16 40 H 0.10 0.21 7.72 -2.39 -0.02 0.20 16 41 H 0.44 3.17 8.96 -92.71 -0.83 2.34 16 42 H 0.43 6.92 8.96 -92.71 -0.83 6.09 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 1.38 7.01 -2.39 -0.02 1.36 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -86.40 376.91 -5.52 -91.92 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -2.05 Total: 31.68 kcal Atomic # 6 Polarization: 24.80 SS G_CDS: 6.98 Total: 31.78 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -12.30 Total: -131.00 kcal Atomic # 8 Polarization: -67.98 SS G_CDS: -0.17 Total: -68.15 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -86.40 -5.52 -91.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202231894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.464 kcal (2) G-P(sol) polarization free energy of solvation -86.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds