Wall clock time and date at job start Sat Apr 11 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48496 * 109.47323 * 93.69018 * 3 2 1 5 5 H 1.48502 * 109.47378 * 213.69079 * 3 2 1 6 6 H 1.48504 * 109.46936 * 333.68882 * 3 2 1 7 7 C 1.40047 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00171 * 9.40927 * 7 2 1 9 9 C 1.41336 * 119.99980 * 189.40658 * 7 2 1 10 10 C 1.40861 * 120.14556 * 187.89861 * 9 7 2 11 11 N 1.31863 * 119.95592 * 179.73151 * 10 9 7 12 12 C 1.32204 * 120.28440 * 0.54526 * 11 10 9 13 13 C 1.39991 * 120.30040 * 359.73171 * 12 11 10 14 14 C 1.48295 * 119.98576 * 179.97438 * 13 12 11 15 15 C 1.39410 * 120.12897 * 179.97438 * 14 13 12 16 16 C 1.37974 * 119.87663 * 180.02562 * 15 14 13 17 17 C 1.38360 * 120.12575 * 359.97438 * 16 15 14 18 18 C 1.38319 * 120.25270 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.93526 * 179.97438 * 18 17 16 20 20 C 1.52991 * 109.47121 * 90.00152 * 19 18 17 21 21 N 1.46901 * 109.47399 * 180.02562 * 20 19 18 22 22 C 1.47012 * 110.99730 * 293.63589 * 21 20 19 23 23 C 1.53095 * 109.25812 * 177.60427 * 22 21 20 24 24 O 1.43021 * 109.25855 * 56.84855 * 23 22 21 25 25 C 1.43014 * 113.73642 * 301.32789 * 24 23 22 26 26 C 1.47011 * 111.00144 * 169.99880 * 21 20 19 27 27 C 1.38022 * 120.12397 * 359.76674 * 18 17 16 28 28 N 1.32546 * 120.03103 * 359.97249 * 13 12 11 29 29 H 0.97004 * 119.99879 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.02215 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.84687 * 179.70449 * 12 11 10 32 32 H 1.08006 * 120.05949 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.94251 * 179.97438 * 16 15 14 34 34 H 1.08005 * 119.87575 * 179.97438 * 17 16 15 35 35 H 1.09005 * 109.46747 * 210.00179 * 19 18 17 36 36 H 1.09003 * 109.47166 * 329.99709 * 19 18 17 37 37 H 1.09005 * 109.47332 * 299.99669 * 20 19 18 38 38 H 1.09003 * 109.47462 * 59.99738 * 20 19 18 39 39 H 1.09000 * 109.50759 * 297.54171 * 22 21 20 40 40 H 1.08998 * 109.50937 * 57.66657 * 22 21 20 41 41 H 1.09001 * 109.50860 * 296.91271 * 23 22 21 42 42 H 1.09005 * 109.54434 * 176.80206 * 23 22 21 43 43 H 1.08997 * 109.50779 * 298.73995 * 25 24 23 44 44 H 1.08995 * 109.54052 * 178.62792 * 25 24 23 45 45 H 1.08997 * 109.50785 * 302.32113 * 26 21 20 46 46 H 1.08993 * 109.50917 * 62.41491 * 26 21 20 47 47 H 1.08004 * 120.06309 * 180.26058 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.5669 2.0014 1.3971 5 1 3.4977 1.4640 -0.7766 6 1 1.4019 2.6739 -0.6206 7 6 2.0076 -1.2128 -0.0005 8 1 1.4785 -2.1417 -0.1539 9 6 3.4067 -1.2211 0.1995 10 6 4.1377 -2.4140 0.0354 11 7 5.4436 -2.4163 0.2178 12 6 6.0703 -1.3052 0.5651 13 6 5.3542 -0.1147 0.7369 14 6 6.0641 1.1275 1.1271 15 6 5.3540 2.3149 1.2986 16 6 6.0198 3.4677 1.6611 17 6 7.3896 3.4467 1.8551 18 6 8.0992 2.2713 1.6874 19 6 9.5911 2.2566 1.9000 20 6 9.8945 1.9315 3.3638 21 7 11.3487 1.9179 3.5712 22 6 11.9752 0.8093 2.8365 23 6 13.4926 0.8680 3.0314 24 8 13.7905 0.8277 4.4297 25 6 13.1966 1.8935 5.1757 26 6 11.6762 1.8452 5.0025 27 6 7.4429 1.1108 1.3301 28 7 4.0419 -0.0971 0.5510 29 1 -0.4850 0.8401 0.0004 30 1 3.6294 -3.3251 -0.2435 31 1 7.1394 -1.3162 0.7173 32 1 4.2847 2.3325 1.1470 33 1 5.4708 4.3882 1.7938 34 1 7.9068 4.3515 2.1385 35 1 10.0420 1.4994 1.2585 36 1 10.0030 3.2349 1.6520 37 1 9.4436 2.6888 4.0053 38 1 9.4826 0.9533 3.6117 39 1 11.5959 -0.1394 3.2162 40 1 11.7409 0.8972 1.7756 41 1 13.8790 1.7930 2.6035 42 1 13.9572 0.0156 2.5356 43 1 13.5744 2.8483 4.8101 44 1 13.4464 1.7832 6.2309 45 1 11.2237 2.6893 5.5228 46 1 11.2914 0.9135 5.4171 47 1 7.9973 0.1927 1.2035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240261654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:03 Heat of formation + Delta-G solvation = -4.183175 kcal Electronic energy + Delta-G solvation = -28311.244398 eV Core-core repulsion = 24457.295230 eV Total energy + Delta-G solvation = -3853.949167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48157 -40.61510 -39.95029 -37.18014 -36.11507 -35.02266 -33.95138 -33.41715 -32.11798 -31.00054 -30.02196 -28.12385 -27.24133 -25.50316 -24.99742 -24.48221 -23.54319 -22.52523 -21.41775 -21.21053 -19.81619 -18.54863 -17.76221 -17.57772 -17.17663 -17.13598 -16.95733 -16.35775 -16.33865 -15.98652 -15.76766 -15.57653 -15.46656 -15.14821 -14.88753 -14.66296 -14.18898 -14.00742 -13.97097 -13.85551 -13.37011 -13.21010 -13.08410 -12.99869 -12.93659 -12.64456 -12.48511 -12.31861 -12.18222 -11.96994 -11.78372 -11.68485 -11.44419 -11.38629 -11.05586 -10.67718 -10.51897 -9.74256 -9.46913 -9.43152 -9.23665 -9.06394 -6.90979 -0.31905 0.39338 0.53193 0.98851 1.33090 1.44036 1.54855 2.29042 2.43042 2.68989 2.86801 2.99576 3.29468 3.51500 3.80978 3.82877 3.91157 3.93759 3.99077 4.04644 4.09900 4.18006 4.22147 4.24611 4.33782 4.36958 4.46441 4.50968 4.55573 4.59631 4.61587 4.68693 4.75964 4.82834 4.84774 4.90620 4.94703 5.01607 5.03507 5.06106 5.10596 5.22649 5.46827 5.52184 5.61115 5.65257 5.86444 5.93301 5.94634 6.02881 6.20283 6.25299 6.34086 6.95037 7.39940 7.86974 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.002489 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.506522 B =11248.857939 C =12293.896161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.051 3.949 3 Si 1.040 2.960 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.315 1.315 7 C -0.417 4.417 8 H 0.091 0.909 9 C 0.183 3.817 10 C -0.053 4.053 11 N -0.426 5.426 12 C -0.096 4.096 13 C 0.151 3.849 14 C -0.059 4.059 15 C -0.132 4.132 16 C -0.124 4.124 17 C -0.096 4.096 18 C -0.081 4.081 19 C -0.063 4.063 20 C 0.064 3.936 21 N -0.538 5.538 22 C 0.011 3.989 23 C 0.062 3.938 24 O -0.410 6.410 25 C 0.063 3.937 26 C 0.015 3.985 27 C -0.094 4.094 28 N -0.551 5.551 29 H 0.303 0.697 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.031 0.969 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.031 0.969 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.298 10.664 7.542 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.171 4.171 3 Si 0.874 3.126 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.247 1.247 7 C -0.449 4.449 8 H 0.109 0.891 9 C 0.058 3.942 10 C -0.222 4.222 11 N -0.137 5.137 12 C -0.254 4.254 13 C 0.008 3.992 14 C -0.060 4.060 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.114 4.114 18 C -0.082 4.082 19 C -0.100 4.100 20 C -0.064 4.064 21 N -0.263 5.263 22 C -0.117 4.117 23 C -0.014 4.014 24 O -0.329 6.329 25 C -0.014 4.014 26 C -0.113 4.113 27 C -0.113 4.113 28 N -0.274 5.274 29 H 0.113 0.887 30 H 0.175 0.825 31 H 0.187 0.813 32 H 0.124 0.876 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.118 0.882 46 H 0.049 0.951 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 23.326 10.932 7.442 26.814 hybrid contribution -1.395 -0.601 0.046 1.519 sum 21.931 10.331 7.488 25.372 Atomic orbital electron populations 1.69588 1.09000 1.32619 1.31998 1.26945 0.95540 1.05436 0.89162 0.84212 0.75447 0.73684 0.79219 1.19991 1.20020 1.24678 1.19569 0.89692 0.96096 1.39546 0.89068 1.19559 0.94745 0.89206 0.90712 1.23350 0.90273 0.98867 1.09737 1.67788 1.10054 1.29122 1.06736 1.23054 1.00891 0.88686 1.12720 1.20924 0.90236 0.94504 0.93505 1.18691 0.94057 0.91159 1.02117 1.21787 1.00567 0.93487 0.99226 1.21364 0.95647 0.97583 0.99620 1.21476 0.93144 0.98730 0.98083 1.19921 0.96646 0.92477 0.99152 1.20498 0.89049 1.04483 0.95972 1.22077 0.86871 1.00389 0.97029 1.62272 1.10300 1.44090 1.09598 1.22914 0.95995 0.92094 1.00714 1.22786 0.93547 1.03399 0.81714 1.87962 1.73599 1.50752 1.20568 1.22787 0.90701 0.90556 0.97360 1.22843 0.97866 1.01718 0.88852 1.21234 0.91687 0.99463 0.98938 1.67526 1.09385 1.28211 1.22254 0.88651 0.82475 0.81284 0.87624 0.83703 0.82273 0.90311 0.88445 0.89809 0.95677 0.95090 0.88097 0.91570 0.87296 0.91604 0.87109 0.88210 0.95096 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.39 13.92 21.84 0.30 -42.08 16 2 C 0.05 2.70 5.52 85.30 0.47 3.17 16 3 Si 1.04 49.20 22.92 68.60 1.57 50.77 16 4 H -0.27 -12.75 6.12 99.48 0.61 -12.14 16 5 H -0.27 -13.65 6.28 99.48 0.62 -13.03 16 6 H -0.31 -13.97 7.11 99.48 0.71 -13.27 16 7 C -0.42 -22.65 9.71 23.47 0.23 -22.42 16 8 H 0.09 5.00 8.06 -2.91 -0.02 4.97 16 9 C 0.18 9.62 6.33 40.25 0.25 9.87 16 10 C -0.05 -2.56 10.98 85.33 0.94 -1.62 16 11 N -0.43 -19.61 10.47 -192.06 -2.01 -21.62 16 12 C -0.10 -4.10 10.62 85.06 0.90 -3.19 16 13 C 0.15 6.83 6.74 42.14 0.28 7.11 16 14 C -0.06 -2.22 5.88 -20.04 -0.12 -2.33 16 15 C -0.13 -4.87 9.54 22.49 0.21 -4.66 16 16 C -0.12 -3.35 10.03 22.24 0.22 -3.13 16 17 C -0.10 -2.03 9.69 22.32 0.22 -1.81 16 18 C -0.08 -1.78 5.13 -19.90 -0.10 -1.88 16 19 C -0.06 -0.97 5.27 29.85 0.16 -0.81 16 20 C 0.06 1.01 4.94 86.30 0.43 1.44 16 21 N -0.54 -8.06 4.73 -895.24 -4.23 -12.29 16 22 C 0.01 0.16 5.44 86.31 0.47 0.63 16 23 C 0.06 0.85 7.01 72.01 0.50 1.35 16 24 O -0.41 -7.21 10.83 -148.98 -1.61 -8.82 16 25 C 0.06 0.81 7.01 72.02 0.50 1.31 16 26 C 0.02 0.21 5.65 86.32 0.49 0.70 16 27 C -0.09 -2.69 9.08 22.49 0.20 -2.48 16 28 N -0.55 -28.10 4.26 -177.65 -0.76 -28.86 16 29 H 0.30 14.28 8.29 -92.71 -0.77 13.51 16 30 H 0.16 6.90 8.06 -2.91 -0.02 6.87 16 31 H 0.17 5.84 6.19 -2.91 -0.02 5.82 16 32 H 0.11 4.46 3.05 -2.91 -0.01 4.45 16 33 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.08 1.16 6.46 -2.38 -0.02 1.15 16 36 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 37 H 0.08 1.25 8.04 -2.38 -0.02 1.23 16 38 H 0.02 0.48 8.12 -2.39 -0.02 0.46 16 39 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.10 1.24 6.38 -2.39 -0.02 1.23 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.10 1.09 8.09 -2.39 -0.02 1.07 16 46 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.14 3.46 6.19 -2.91 -0.02 3.44 16 Total: -1.00 -65.03 371.16 0.34 -64.69 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.81 Total: 16.97 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 6.26 Total: -18.77 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -6.69 Total: -104.85 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.61 Total: -8.82 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.57 Total: 50.77 kcal Total: -65.03 0.34 -64.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240261654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.511 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds