Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00142 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99967 * 3 2 1 7 7 C 1.40139 * 119.99880 * 180.27356 * 2 1 3 8 8 H 1.08002 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.41090 * 120.00403 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.12842 * 359.72801 * 9 7 2 11 11 C 1.31594 * 120.82701 * 179.71443 * 10 9 7 12 12 C 1.40432 * 119.09337 * 0.55018 * 11 10 9 13 13 C 1.47936 * 120.79004 * 179.70371 * 12 11 10 14 14 C 1.39670 * 120.14422 * 179.73978 * 13 12 11 15 15 C 1.37901 * 119.84899 * 179.74602 * 14 13 12 16 16 C 1.38430 * 120.14337 * 0.55638 * 15 14 13 17 17 C 1.38383 * 120.30367 * 359.70134 * 16 15 14 18 18 C 1.50695 * 119.92900 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47088 * 269.97805 * 18 17 16 20 20 N 1.46894 * 109.47467 * 180.02562 * 19 18 17 21 21 C 1.47018 * 110.99610 * 293.63507 * 20 19 18 22 22 C 1.53099 * 109.25709 * 177.60957 * 21 20 19 23 23 O 1.43013 * 109.26405 * 56.84559 * 22 21 20 24 24 C 1.43016 * 113.73727 * 301.33400 * 23 22 21 25 25 C 1.47015 * 111.00515 * 170.00008 * 20 19 18 26 26 C 1.37943 * 120.14657 * 0.02562 * 17 16 15 27 27 C 1.40425 * 118.41421 * 359.72416 * 12 11 10 28 28 N 1.31583 * 119.09984 * 0.02562 * 27 12 11 29 29 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 30 30 H 1.08005 * 120.45383 * 180.27356 * 11 10 9 31 31 H 1.08005 * 120.07639 * 0.02562 * 14 13 12 32 32 H 1.07997 * 119.92979 * 180.25914 * 15 14 13 33 33 H 1.07999 * 119.84772 * 179.71666 * 16 15 14 34 34 H 1.09004 * 109.47228 * 29.97324 * 18 17 16 35 35 H 1.08998 * 109.47606 * 149.97488 * 18 17 16 36 36 H 1.09004 * 109.46693 * 299.99847 * 19 18 17 37 37 H 1.08998 * 109.47155 * 59.99407 * 19 18 17 38 38 H 1.09000 * 109.50359 * 297.53837 * 21 20 19 39 39 H 1.08992 * 109.51300 * 57.67043 * 21 20 19 40 40 H 1.09002 * 109.50488 * 296.90872 * 22 21 20 41 41 H 1.09006 * 109.54136 * 176.80438 * 22 21 20 42 42 H 1.09006 * 109.50243 * 298.73176 * 24 23 22 43 43 H 1.08998 * 109.54656 * 178.62936 * 24 23 22 44 44 H 1.09001 * 109.50373 * 302.32276 * 25 20 19 45 45 H 1.09000 * 109.50647 * 62.40911 * 25 20 19 46 46 H 1.08001 * 120.07476 * 180.02562 * 26 17 16 47 47 H 1.08006 * 120.44860 * 180.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0073 -1.2136 -0.0058 8 1 3.0873 -1.2136 -0.0062 9 6 1.3019 -2.4355 -0.0122 10 7 -0.0343 -2.4153 -0.0070 11 6 -0.7257 -3.5349 -0.0184 12 6 -0.0404 -4.7606 -0.0242 13 6 -0.7801 -6.0418 -0.0304 14 6 -0.0849 -7.2531 -0.0416 15 6 -0.7805 -8.4438 -0.0420 16 6 -2.1648 -8.4401 -0.0429 17 6 -2.8599 -7.2436 -0.0371 18 6 -4.3668 -7.2494 -0.0375 19 6 -4.8765 -7.2437 -1.4802 20 7 -6.3454 -7.2489 -1.4806 21 6 -6.8680 -8.5109 -0.9371 22 6 -8.3973 -8.4501 -0.9004 23 8 -8.8905 -8.1818 -2.2157 24 6 -8.4021 -6.9597 -2.7755 25 6 -6.8728 -7.0054 -2.8312 26 6 -2.1764 -6.0454 -0.0310 27 6 1.3637 -4.7412 -0.0237 28 7 1.9876 -3.5827 -0.0172 29 1 -0.4850 0.8401 0.0041 30 1 -1.8055 -3.5115 -0.0186 31 1 0.9952 -7.2572 -0.0455 32 1 -0.2442 -9.3812 -0.0465 33 1 -2.7048 -9.3754 -0.0478 34 1 -4.7269 -8.1436 0.4714 35 1 -4.7338 -6.3637 0.4810 36 1 -4.5165 -6.3496 -1.9891 37 1 -4.5095 -8.1295 -1.9987 38 1 -6.5518 -9.3390 -1.5714 39 1 -6.4853 -8.6585 0.0727 40 1 -8.7139 -7.6562 -0.2240 41 1 -8.7919 -9.4045 -0.5514 42 1 -8.7188 -6.1224 -2.1535 43 1 -8.7995 -6.8355 -3.7828 44 1 -6.4936 -6.0539 -3.2039 45 1 -6.5560 -7.8090 -3.4960 46 1 -2.7201 -5.1122 -0.0261 47 1 1.9239 -5.6646 -0.0285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240270399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 22.608712 kcal Electronic energy + Delta-G solvation = -27732.767927 eV Core-core repulsion = 23879.980543 eV Total energy + Delta-G solvation = -3852.787384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.90045 -39.37010 -38.38542 -36.33491 -34.15637 -33.07752 -32.14649 -31.59236 -31.43200 -29.35459 -28.80772 -26.46580 -26.05632 -24.32211 -23.44402 -22.80689 -22.30526 -20.93233 -20.64130 -19.90268 -18.04032 -16.92884 -16.46922 -16.38762 -16.10690 -15.54673 -15.33316 -15.29734 -15.03820 -14.76261 -14.53266 -14.31375 -14.15229 -13.24358 -13.22529 -13.13019 -12.89667 -12.78763 -12.60448 -12.41328 -12.06750 -12.00787 -11.68242 -11.56138 -11.45303 -11.35494 -11.17332 -10.94968 -10.83524 -10.75584 -10.46698 -10.42872 -9.97367 -9.74479 -9.31356 -9.24125 -8.95413 -8.66190 -8.37449 -7.45451 -7.39349 -6.72838 -4.85883 1.48368 1.79173 2.67029 2.89785 2.94773 2.97580 3.05446 3.45888 3.62005 3.73467 4.21512 4.56139 4.60025 4.68935 4.72574 4.85914 4.93733 5.02098 5.08773 5.23704 5.27828 5.29317 5.33833 5.39072 5.46462 5.49565 5.53969 5.59830 5.65681 5.68655 5.75485 5.79823 5.85614 5.95248 6.03999 6.05691 6.19503 6.33489 6.51383 6.67993 6.71696 6.71804 6.80526 6.83972 6.89922 6.94795 7.02633 7.39914 7.42270 7.55955 7.96606 8.30192 8.38070 8.95071 9.91548 10.10520 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.002200 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.715313 B =12726.002364 C =14484.696635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.059 3.941 3 Si 0.923 3.077 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.374 4.374 8 H 0.096 0.904 9 C 0.378 3.622 10 N -0.508 5.508 11 C 0.182 3.818 12 C -0.332 4.332 13 C 0.041 3.959 14 C -0.150 4.150 15 C -0.106 4.106 16 C -0.158 4.158 17 C -0.074 4.074 18 C -0.072 4.072 19 C 0.062 3.938 20 N -0.537 5.537 21 C 0.014 3.986 22 C 0.063 3.937 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.017 3.983 26 C -0.139 4.139 27 C 0.188 3.812 28 N -0.593 5.593 29 H 0.280 0.720 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.118 0.882 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -12.538 -2.300 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.169 4.169 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.407 4.407 8 H 0.115 0.885 9 C 0.146 3.854 10 N -0.224 5.224 11 C 0.005 3.995 12 C -0.342 4.342 13 C 0.040 3.960 14 C -0.168 4.168 15 C -0.125 4.125 16 C -0.177 4.177 17 C -0.074 4.074 18 C -0.109 4.109 19 C -0.065 4.065 20 N -0.262 5.262 21 C -0.114 4.114 22 C -0.014 4.014 23 O -0.307 6.307 24 C -0.013 4.013 25 C -0.111 4.111 26 C -0.158 4.158 27 C 0.013 3.987 28 N -0.311 5.311 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.136 0.864 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.155 -11.043 -2.092 17.302 hybrid contribution 0.385 -0.771 -0.390 0.946 sum -12.770 -11.814 -2.482 17.573 Atomic orbital electron populations 1.70112 1.07479 1.28874 1.25071 1.26242 0.95155 1.01800 0.93739 0.86113 0.79936 0.78993 0.80348 1.19860 1.18508 1.18500 1.19490 0.95109 0.87848 1.38285 0.88547 1.19962 0.86009 0.90872 0.88525 1.69354 1.08067 1.26767 1.18185 1.23065 0.99060 0.87939 0.89421 1.19751 0.95225 0.93207 1.25992 1.18701 0.92280 0.92203 0.92863 1.21137 0.99567 0.91847 1.04277 1.20892 0.94101 0.97429 1.00032 1.20754 0.94096 0.96698 1.06123 1.19547 0.94422 0.93263 1.00204 1.20520 0.91346 1.03012 0.96064 1.22139 0.85521 1.01564 0.97292 1.62219 1.08612 1.33505 1.21913 1.22848 0.96256 0.90896 1.01436 1.22674 0.92362 1.01701 0.84638 1.87971 1.70203 1.41202 1.31316 1.22670 0.92313 0.87060 0.99276 1.22786 0.96327 1.02137 0.89899 1.21023 0.93563 0.97099 1.04072 1.22690 0.90573 0.95815 0.89634 1.68652 1.40788 0.98459 1.23246 0.90832 0.85151 0.86556 0.87002 0.87453 0.91503 0.90251 0.90144 0.94530 0.94027 0.89222 0.92181 0.88568 0.92131 0.88490 0.89370 0.93996 0.86371 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.50 11.40 55.56 0.63 -16.86 16 2 C 0.06 1.44 5.50 -17.34 -0.10 1.34 16 3 Si 0.92 17.60 29.56 -169.99 -5.02 12.58 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.37 -9.87 9.35 -37.79 -0.35 -10.22 16 8 H 0.10 2.42 7.85 -52.49 -0.41 2.01 16 9 C 0.38 10.42 7.35 -158.17 -1.16 9.25 16 10 N -0.51 -13.66 7.83 -12.41 -0.10 -13.76 16 11 C 0.18 4.27 10.70 -16.83 -0.18 4.09 16 12 C -0.33 -7.22 5.94 -104.28 -0.62 -7.84 16 13 C 0.04 0.76 5.88 -104.87 -0.62 0.15 16 14 C -0.15 -2.44 9.45 -39.17 -0.37 -2.81 16 15 C -0.11 -1.50 10.03 -39.63 -0.40 -1.90 16 16 C -0.16 -2.13 9.70 -39.46 -0.38 -2.52 16 17 C -0.07 -1.03 5.13 -104.68 -0.54 -1.57 16 18 C -0.07 -0.82 5.28 -27.88 -0.15 -0.96 16 19 C 0.06 0.68 4.94 -3.82 -0.02 0.66 16 20 N -0.54 -5.44 4.73 -234.31 -1.11 -6.55 16 21 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 22 C 0.06 0.53 7.01 37.21 0.26 0.79 16 23 O -0.39 -3.96 10.83 -35.23 -0.38 -4.34 16 24 C 0.06 0.54 7.01 37.21 0.26 0.80 16 25 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 26 C -0.14 -2.29 9.10 -39.17 -0.36 -2.64 16 27 C 0.19 4.25 10.70 -16.84 -0.18 4.07 16 28 N -0.59 -15.40 10.34 -12.41 -0.13 -15.53 16 29 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 30 H 0.13 2.69 6.33 -52.48 -0.33 2.36 16 31 H 0.12 1.77 6.29 -52.48 -0.33 1.44 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.07 0.68 6.46 -51.93 -0.34 0.34 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 37 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.72 6.38 -51.93 -0.33 0.39 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 1.90 6.29 -52.49 -0.33 1.57 16 47 H 0.13 2.51 6.33 -52.48 -0.33 2.17 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -29.74 381.67 -11.89 -41.63 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.60 Total: 6.14 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.94 Total: -9.07 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.70 Total: -52.69 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.38 Total: -4.34 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.74 -11.89 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240270399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.238 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds