Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00142 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99967 * 3 2 1 7 7 C 1.40139 * 119.99880 * 180.27356 * 2 1 3 8 8 H 1.08002 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.41090 * 120.00403 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.12842 * 359.72801 * 9 7 2 11 11 C 1.31594 * 120.82701 * 179.71443 * 10 9 7 12 12 C 1.40432 * 119.09337 * 0.55018 * 11 10 9 13 13 C 1.47936 * 120.79004 * 179.70371 * 12 11 10 14 14 C 1.39670 * 120.14422 * 179.73978 * 13 12 11 15 15 C 1.37901 * 119.84899 * 179.74602 * 14 13 12 16 16 C 1.38430 * 120.14337 * 0.55638 * 15 14 13 17 17 C 1.38383 * 120.30367 * 359.70134 * 16 15 14 18 18 C 1.50695 * 119.92900 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47088 * 269.97805 * 18 17 16 20 20 N 1.46894 * 109.47467 * 180.02562 * 19 18 17 21 21 C 1.47018 * 110.99610 * 293.63507 * 20 19 18 22 22 C 1.53099 * 109.25709 * 177.60957 * 21 20 19 23 23 O 1.43013 * 109.26405 * 56.84559 * 22 21 20 24 24 C 1.43016 * 113.73727 * 301.33400 * 23 22 21 25 25 C 1.47015 * 111.00515 * 170.00008 * 20 19 18 26 26 C 1.37943 * 120.14657 * 0.02562 * 17 16 15 27 27 C 1.40425 * 118.41421 * 359.72416 * 12 11 10 28 28 N 1.31583 * 119.09984 * 0.02562 * 27 12 11 29 29 H 0.97005 * 120.00023 * 359.72375 * 1 2 3 30 30 H 1.08005 * 120.45383 * 180.27356 * 11 10 9 31 31 H 1.08005 * 120.07639 * 0.02562 * 14 13 12 32 32 H 1.07997 * 119.92979 * 180.25914 * 15 14 13 33 33 H 1.07999 * 119.84772 * 179.71666 * 16 15 14 34 34 H 1.09004 * 109.47228 * 29.97324 * 18 17 16 35 35 H 1.08998 * 109.47606 * 149.97488 * 18 17 16 36 36 H 1.09004 * 109.46693 * 299.99847 * 19 18 17 37 37 H 1.08998 * 109.47155 * 59.99407 * 19 18 17 38 38 H 1.09000 * 109.50359 * 297.53837 * 21 20 19 39 39 H 1.08992 * 109.51300 * 57.67043 * 21 20 19 40 40 H 1.09002 * 109.50488 * 296.90872 * 22 21 20 41 41 H 1.09006 * 109.54136 * 176.80438 * 22 21 20 42 42 H 1.09006 * 109.50243 * 298.73176 * 24 23 22 43 43 H 1.08998 * 109.54656 * 178.62936 * 24 23 22 44 44 H 1.09001 * 109.50373 * 302.32276 * 25 20 19 45 45 H 1.09000 * 109.50647 * 62.40911 * 25 20 19 46 46 H 1.08001 * 120.07476 * 180.02562 * 26 17 16 47 47 H 1.08006 * 120.44860 * 180.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0073 -1.2136 -0.0058 8 1 3.0873 -1.2136 -0.0062 9 6 1.3019 -2.4355 -0.0122 10 7 -0.0343 -2.4153 -0.0070 11 6 -0.7257 -3.5349 -0.0184 12 6 -0.0404 -4.7606 -0.0242 13 6 -0.7801 -6.0418 -0.0304 14 6 -0.0849 -7.2531 -0.0416 15 6 -0.7805 -8.4438 -0.0420 16 6 -2.1648 -8.4401 -0.0429 17 6 -2.8599 -7.2436 -0.0371 18 6 -4.3668 -7.2494 -0.0375 19 6 -4.8765 -7.2437 -1.4802 20 7 -6.3454 -7.2489 -1.4806 21 6 -6.8680 -8.5109 -0.9371 22 6 -8.3973 -8.4501 -0.9004 23 8 -8.8905 -8.1818 -2.2157 24 6 -8.4021 -6.9597 -2.7755 25 6 -6.8728 -7.0054 -2.8312 26 6 -2.1764 -6.0454 -0.0310 27 6 1.3637 -4.7412 -0.0237 28 7 1.9876 -3.5827 -0.0172 29 1 -0.4850 0.8401 0.0041 30 1 -1.8055 -3.5115 -0.0186 31 1 0.9952 -7.2572 -0.0455 32 1 -0.2442 -9.3812 -0.0465 33 1 -2.7048 -9.3754 -0.0478 34 1 -4.7269 -8.1436 0.4714 35 1 -4.7338 -6.3637 0.4810 36 1 -4.5165 -6.3496 -1.9891 37 1 -4.5095 -8.1295 -1.9987 38 1 -6.5518 -9.3390 -1.5714 39 1 -6.4853 -8.6585 0.0727 40 1 -8.7139 -7.6562 -0.2240 41 1 -8.7919 -9.4045 -0.5514 42 1 -8.7188 -6.1224 -2.1535 43 1 -8.7995 -6.8355 -3.7828 44 1 -6.4936 -6.0539 -3.2039 45 1 -6.5560 -7.8090 -3.4960 46 1 -2.7201 -5.1122 -0.0261 47 1 1.9239 -5.6646 -0.0285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240270399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = 5.373480 kcal Electronic energy + Delta-G solvation = -27733.515302 eV Core-core repulsion = 23879.980543 eV Total energy + Delta-G solvation = -3853.534760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.09364 -40.58451 -39.75545 -37.17865 -35.88303 -34.29906 -33.93927 -33.03634 -32.13636 -30.75752 -30.01696 -27.87043 -27.25332 -25.03320 -24.97121 -24.40914 -23.43268 -22.35909 -21.41608 -21.13951 -19.84653 -18.05424 -17.77042 -17.51542 -17.12241 -16.90741 -16.38239 -16.26712 -16.06373 -15.99911 -15.68370 -15.44061 -15.12645 -15.02582 -14.56930 -14.38491 -14.20407 -14.02983 -13.85335 -13.46561 -13.21960 -13.07989 -13.01936 -12.85143 -12.77056 -12.48332 -12.35712 -12.23587 -11.98251 -11.79172 -11.74531 -11.44487 -11.38719 -11.22168 -11.00673 -10.69543 -10.52061 -9.59337 -9.40160 -9.33540 -8.96926 -8.52031 -6.75147 0.01384 0.58376 0.99292 1.14787 1.38188 1.52877 1.55221 2.16121 2.62911 2.72380 2.96255 3.10538 3.85153 3.86792 3.88294 3.89110 3.93343 3.98167 4.03183 4.10538 4.16008 4.19949 4.25179 4.33877 4.36971 4.41273 4.46995 4.55524 4.63060 4.67247 4.71275 4.74513 4.80702 4.82431 4.92965 4.95173 5.01159 5.06622 5.11941 5.24854 5.26856 5.36958 5.60592 5.73214 5.83846 5.92809 5.94163 5.96979 6.06784 6.17557 6.25094 6.43269 6.51759 7.09794 8.12570 8.26776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.002200 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.715313 B =12726.002364 C =14484.696635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.418 4.418 8 H 0.094 0.906 9 C 0.350 3.650 10 N -0.538 5.538 11 C 0.161 3.839 12 C -0.313 4.313 13 C 0.004 3.996 14 C -0.152 4.152 15 C -0.106 4.106 16 C -0.142 4.142 17 C -0.073 4.073 18 C -0.064 4.064 19 C 0.069 3.931 20 N -0.546 5.546 21 C 0.014 3.986 22 C 0.061 3.939 23 O -0.406 6.406 24 C 0.064 3.936 25 C 0.016 3.984 26 C -0.144 4.144 27 C 0.171 3.829 28 N -0.618 5.618 29 H 0.288 0.712 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.060 0.940 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.112 0.888 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -14.886 -2.200 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.205 4.205 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.452 4.452 8 H 0.112 0.888 9 C 0.116 3.884 10 N -0.255 5.255 11 C -0.014 4.014 12 C -0.323 4.323 13 C 0.003 3.997 14 C -0.171 4.171 15 C -0.123 4.123 16 C -0.160 4.160 17 C -0.074 4.074 18 C -0.102 4.102 19 C -0.059 4.059 20 N -0.271 5.271 21 C -0.114 4.114 22 C -0.016 4.016 23 O -0.325 6.325 24 C -0.013 4.013 25 C -0.112 4.112 26 C -0.162 4.162 27 C -0.002 4.002 28 N -0.338 5.338 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.108 0.892 45 H 0.056 0.944 46 H 0.130 0.870 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.402 -13.468 -1.991 19.818 hybrid contribution 0.562 -0.443 -0.426 0.833 sum -13.841 -13.911 -2.417 19.772 Atomic orbital electron populations 1.70175 1.09074 1.30287 1.26095 1.27188 0.95974 1.04894 0.92471 0.84954 0.78514 0.74046 0.80377 1.18400 1.18038 1.18043 1.19777 0.95267 0.88952 1.41156 0.88779 1.20380 0.86648 0.91866 0.89500 1.69311 1.08182 1.28381 1.19655 1.23485 1.00022 0.88217 0.89693 1.20058 0.95190 0.94348 1.22657 1.18661 0.93081 0.91402 0.96581 1.21324 1.00166 0.91914 1.03670 1.21270 0.94597 0.97796 0.98682 1.21228 0.94162 0.97697 1.02906 1.19804 0.95865 0.92590 0.99129 1.20482 0.89434 1.03786 0.96496 1.21998 0.86232 1.00912 0.96725 1.62219 1.07996 1.34447 1.22470 1.22903 0.96596 0.90056 1.01801 1.22815 0.92056 1.02747 0.83980 1.87950 1.70605 1.41767 1.32187 1.22754 0.91760 0.86619 1.00161 1.22816 0.96852 1.02076 0.89457 1.21107 0.92984 0.98179 1.03971 1.23265 0.91491 0.96080 0.89335 1.68661 1.41424 0.99140 1.24548 0.90056 0.83354 0.85907 0.83693 0.84079 0.89394 0.90844 0.91558 0.94453 0.94284 0.88112 0.92178 0.86676 0.92178 0.86914 0.89218 0.94368 0.86964 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.57 11.40 21.85 0.25 -38.32 16 2 C 0.02 0.98 5.50 85.33 0.47 1.45 16 3 Si 1.00 36.93 29.56 68.60 2.03 38.96 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.42 -23.23 9.35 23.43 0.22 -23.01 16 8 H 0.09 5.01 7.85 -2.91 -0.02 4.98 16 9 C 0.35 20.32 7.35 134.91 0.99 21.31 16 10 N -0.54 -30.49 7.83 -193.16 -1.51 -32.01 16 11 C 0.16 7.85 10.70 85.26 0.91 8.77 16 12 C -0.31 -13.91 5.94 -19.64 -0.12 -14.03 16 13 C 0.00 0.16 5.88 -20.03 -0.12 0.04 16 14 C -0.15 -4.64 9.45 22.54 0.21 -4.42 16 15 C -0.11 -2.55 10.03 22.24 0.22 -2.33 16 16 C -0.14 -3.20 9.70 22.35 0.22 -2.98 16 17 C -0.07 -1.85 5.13 -19.90 -0.10 -1.95 16 18 C -0.06 -1.29 5.28 29.85 0.16 -1.13 16 19 C 0.07 1.36 4.94 86.31 0.43 1.79 16 20 N -0.55 -10.02 4.73 -895.22 -4.23 -14.25 16 21 C 0.01 0.22 5.44 86.31 0.47 0.69 16 22 C 0.06 0.87 7.01 72.02 0.50 1.38 16 23 O -0.41 -7.55 10.83 -148.98 -1.61 -9.16 16 24 C 0.06 0.99 7.01 72.01 0.50 1.50 16 25 C 0.02 0.27 5.64 86.31 0.49 0.76 16 26 C -0.14 -4.60 9.10 22.54 0.21 -4.39 16 27 C 0.17 7.92 10.70 85.26 0.91 8.83 16 28 N -0.62 -33.50 10.34 -193.18 -2.00 -35.49 16 29 H 0.29 13.41 8.29 -92.70 -0.77 12.64 16 30 H 0.15 6.41 6.33 -2.91 -0.02 6.39 16 31 H 0.12 3.49 6.29 -2.91 -0.02 3.47 16 32 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.09 1.41 6.46 -2.39 -0.02 1.40 16 35 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 37 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 38 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 1.27 6.38 -2.39 -0.02 1.26 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 45 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 3.63 6.29 -2.91 -0.02 3.61 16 47 H 0.16 6.21 6.33 -2.91 -0.02 6.19 16 Total: -1.00 -68.04 381.67 0.48 -67.55 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.98 Total: 30.46 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 6.58 Total: -7.74 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -7.49 Total: -120.07 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -1.61 Total: -9.16 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -68.04 0.48 -67.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240270399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.924 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds