Wall clock time and date at job start Sat Apr 11 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48499 * 109.47189 * 95.20688 * 3 2 1 5 5 H 1.48505 * 109.46995 * 215.20354 * 3 2 1 6 6 H 1.48500 * 109.47534 * 335.20495 * 3 2 1 7 7 C 1.40174 * 119.99471 * 179.72541 * 2 1 3 8 8 H 1.08001 * 120.00426 * 23.52812 * 7 2 1 9 9 C 1.40796 * 119.99824 * 203.52246 * 7 2 1 10 10 N 1.33974 * 120.29110 * 344.24968 * 9 7 2 11 11 C 1.31605 * 119.90451 * 179.97438 * 10 9 7 12 12 C 1.39195 * 120.49935 * 359.97438 * 11 10 9 13 13 N 1.31999 * 120.59268 * 0.02562 * 12 11 10 14 14 C 1.32858 * 120.07943 * 359.71509 * 13 12 11 15 15 C 1.47791 * 120.25386 * 180.30241 * 14 13 12 16 16 C 1.39688 * 120.15627 * 134.19965 * 15 14 13 17 17 C 1.37920 * 119.84336 * 179.74387 * 16 15 14 18 18 C 1.38401 * 120.15365 * 0.53212 * 17 16 15 19 19 C 1.50699 * 119.84829 * 179.75861 * 18 17 16 20 20 O 1.42896 * 109.47662 * 269.98473 * 19 18 17 21 21 C 1.42897 * 114.00233 * 179.97438 * 20 19 18 22 22 C 1.53108 * 109.52363 * 269.68334 * 21 20 19 23 23 C 1.53043 * 109.27798 * 182.44180 * 22 21 20 24 24 N 1.46846 * 109.52628 * 59.17696 * 23 22 21 25 25 C 1.46846 * 111.19722 * 298.26128 * 24 23 22 26 26 C 1.53041 * 109.52512 * 61.73863 * 25 24 23 27 27 C 1.38407 * 120.30999 * 359.74635 * 18 17 16 28 28 C 1.37915 * 120.15560 * 359.97020 * 27 18 17 29 29 H 0.97006 * 119.99545 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.74801 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.70248 * 180.02562 * 12 11 10 32 32 H 1.08001 * 120.07674 * 0.02562 * 16 15 14 33 33 H 1.07996 * 119.91991 * 180.25199 * 17 16 15 34 34 H 1.09008 * 109.46803 * 29.98569 * 19 18 17 35 35 H 1.08994 * 109.46955 * 149.97719 * 19 18 17 36 36 H 1.09002 * 109.51891 * 29.87339 * 21 20 19 37 37 H 1.09002 * 109.50255 * 302.37635 * 22 21 20 38 38 H 1.08995 * 109.50969 * 62.49868 * 22 21 20 39 39 H 1.08994 * 109.46014 * 299.15938 * 23 22 21 40 40 H 1.09001 * 109.46021 * 179.19360 * 23 22 21 41 41 H 1.00897 * 110.99890 * 62.35401 * 24 23 22 42 42 H 1.09005 * 109.45945 * 301.72662 * 25 24 23 43 43 H 1.08997 * 109.46266 * 181.75670 * 25 24 23 44 44 H 1.09000 * 109.50169 * 180.88160 * 26 25 24 45 45 H 1.08995 * 109.50173 * 60.76352 * 26 25 24 46 46 H 1.07998 * 119.92397 * 180.02562 * 27 18 17 47 47 H 1.07997 * 120.08296 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.5985 1.9828 1.3943 5 1 3.4792 1.4742 -0.8072 6 1 1.3878 2.6819 -0.5871 7 6 2.0076 -1.2140 0.0058 8 1 1.5349 -2.1122 -0.3632 9 6 3.3278 -1.2624 0.4927 10 7 4.0300 -0.1330 0.6551 11 6 5.2633 -0.1871 1.1112 12 6 5.8464 -1.4107 1.4279 13 7 5.1726 -2.5355 1.2755 14 6 3.9242 -2.5076 0.8217 15 6 3.1639 -3.7640 0.6559 16 6 1.8462 -3.8521 1.1108 17 6 1.1409 -5.0261 0.9480 18 6 1.7394 -6.1188 0.3454 19 6 0.9642 -7.4000 0.1760 20 8 1.1563 -8.2286 1.3242 21 6 0.4596 -9.4748 1.2648 22 6 -0.9319 -9.3130 1.8826 23 6 -1.6499 -10.6645 1.8714 24 7 -0.8661 -11.6430 2.6360 25 6 0.4572 -11.8502 2.0340 26 6 1.2381 -10.5341 2.0500 27 6 3.0467 -6.0405 -0.1025 28 6 3.7619 -4.8710 0.0485 29 1 -0.4850 0.8401 0.0004 30 1 5.8272 0.7248 1.2408 31 1 6.8592 -1.4401 1.8017 32 1 1.3792 -3.0014 1.5848 33 1 0.1207 -5.0942 1.2956 34 1 -0.0960 -7.1713 0.0662 35 1 1.3168 -7.9231 -0.7128 36 1 0.3636 -9.7892 0.2256 37 1 -0.8355 -8.9607 2.9095 38 1 -1.5062 -8.5911 1.3020 39 1 -1.7583 -11.0096 0.8433 40 1 -2.6357 -10.5557 2.3237 41 1 -0.7841 -11.3649 3.6024 42 1 0.3389 -12.1898 1.0050 43 1 1.0018 -12.6026 2.6043 44 1 2.2143 -10.6846 1.5889 45 1 1.3687 -10.2010 3.0795 46 1 3.5075 -6.8969 -0.5722 47 1 4.7817 -4.8110 -0.3018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245403515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:21 Heat of formation + Delta-G solvation = -16.560558 kcal Electronic energy + Delta-G solvation = -28174.753592 eV Core-core repulsion = 24320.267701 eV Total energy + Delta-G solvation = -3854.485891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35150 -40.46244 -39.67917 -37.69161 -36.13227 -34.79408 -33.81500 -32.10750 -31.81785 -31.78110 -30.86870 -28.34183 -27.05642 -24.70695 -24.08395 -23.90301 -23.68055 -23.21496 -21.88053 -21.38337 -19.84243 -18.18380 -18.05161 -17.87141 -17.29473 -17.10060 -16.54391 -16.21539 -15.90520 -15.64494 -15.49894 -15.32844 -15.17681 -15.05515 -14.63188 -14.41062 -14.22670 -14.15541 -13.77039 -13.61507 -13.45322 -13.43461 -13.17407 -13.15488 -12.89578 -12.60569 -12.39016 -12.21166 -12.01886 -11.92969 -11.75775 -11.63448 -11.46351 -11.33217 -11.11572 -10.42661 -10.24760 -9.77026 -9.54973 -9.42745 -9.22896 -9.01705 -6.78871 -0.03073 0.55826 0.58159 0.86767 1.42234 1.48145 1.64950 2.38305 2.45822 2.57377 3.07967 3.40805 3.44622 3.59955 3.74941 3.81492 3.94462 3.95538 4.02785 4.12096 4.14291 4.16629 4.19579 4.33388 4.38800 4.41225 4.45844 4.47638 4.61247 4.68053 4.74338 4.78128 4.78899 4.87302 4.92835 4.99273 5.02047 5.07420 5.11921 5.17223 5.23231 5.23908 5.48840 5.65431 5.68648 5.81803 5.92850 6.05061 6.10126 6.28930 6.33032 6.37720 6.44020 7.02151 7.48121 7.83682 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018829 B = 0.002359 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.736859 B =11869.019956 C =12967.279597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.056 3.944 3 Si 1.037 2.963 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.310 1.310 7 C -0.407 4.407 8 H 0.093 0.907 9 C 0.190 3.810 10 N -0.563 5.563 11 C 0.104 3.896 12 C -0.109 4.109 13 N -0.418 5.418 14 C -0.023 4.023 15 C -0.003 4.003 16 C -0.108 4.108 17 C -0.104 4.104 18 C -0.105 4.105 19 C 0.114 3.886 20 O -0.397 6.397 21 C 0.084 3.916 22 C -0.177 4.177 23 C 0.064 3.936 24 N -0.692 5.692 25 C 0.065 3.935 26 C -0.151 4.151 27 C -0.099 4.099 28 C -0.116 4.116 29 H 0.305 0.695 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.346 0.654 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.147 0.853 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -17.577 1.141 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.169 4.169 3 Si 0.869 3.131 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.242 1.242 7 C -0.437 4.437 8 H 0.111 0.889 9 C 0.066 3.934 10 N -0.285 5.285 11 C -0.062 4.062 12 C -0.269 4.269 13 N -0.130 5.130 14 C -0.170 4.170 15 C -0.004 4.004 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.105 4.105 19 C 0.038 3.962 20 O -0.317 6.317 21 C 0.026 3.974 22 C -0.216 4.216 23 C -0.066 4.066 24 N -0.321 5.321 25 C -0.065 4.065 26 C -0.190 4.190 27 C -0.117 4.117 28 C -0.135 4.135 29 H 0.116 0.884 30 H 0.196 0.804 31 H 0.193 0.807 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.164 0.836 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.164 0.836 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.380 -18.057 0.971 18.239 hybrid contribution 0.622 2.128 0.168 2.224 sum -1.758 -15.929 1.140 16.066 Atomic orbital electron populations 1.69590 1.09227 1.32951 1.29316 1.26970 0.95384 1.05408 0.89120 0.84037 0.76597 0.73220 0.79246 1.21174 1.19356 1.24168 1.19557 0.94461 0.97296 1.32414 0.88878 1.19380 0.93708 0.88424 0.91849 1.67663 1.09340 1.29286 1.22187 1.23901 0.91489 0.99892 0.90963 1.23222 1.02466 0.88365 1.12823 1.67829 1.06034 1.31799 1.07382 1.20323 0.92773 0.93166 1.10713 1.18437 0.93207 0.91525 0.97280 1.21255 0.93858 0.97860 0.99777 1.21028 1.00154 0.92229 0.98812 1.19783 0.95046 0.94803 1.00868 1.21292 0.98382 0.87904 0.88572 1.88018 1.71689 1.30067 1.41892 1.22280 0.91532 0.83894 0.99674 1.22777 0.96726 1.00340 1.01784 1.22005 0.96943 0.87916 0.99759 1.60676 1.16389 1.48205 1.06812 1.22041 0.88257 0.94809 1.01404 1.22369 1.00292 0.95718 1.00660 1.21091 0.93508 0.97364 0.99740 1.21255 0.99817 0.92696 0.99756 0.88375 0.80377 0.80742 0.87373 0.85023 0.91720 0.90749 0.91064 0.92287 0.91210 0.90288 0.89584 0.83644 0.90199 0.89004 0.90703 0.92221 0.83577 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.66 13.92 21.86 0.30 -39.36 16 2 C 0.06 2.84 5.50 85.33 0.47 3.31 16 3 Si 1.04 47.01 25.59 68.60 1.76 48.77 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.54 6.58 99.48 0.65 -11.89 16 6 H -0.31 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.41 -21.63 7.79 23.37 0.18 -21.45 16 8 H 0.09 5.12 6.01 -2.91 -0.02 5.10 16 9 C 0.19 9.86 6.43 40.36 0.26 10.12 16 10 N -0.56 -27.63 5.07 -187.85 -0.95 -28.59 16 11 C 0.10 4.26 11.22 84.96 0.95 5.22 16 12 C -0.11 -4.42 11.22 84.90 0.95 -3.46 16 13 N -0.42 -19.40 10.32 -182.30 -1.88 -21.28 16 14 C -0.02 -1.14 6.40 42.43 0.27 -0.86 16 15 C 0.00 -0.14 5.20 -20.05 -0.10 -0.24 16 16 C -0.11 -4.68 7.65 22.54 0.17 -4.51 16 17 C -0.10 -3.76 9.68 22.23 0.22 -3.54 16 18 C -0.10 -3.31 5.52 -19.79 -0.11 -3.42 16 19 C 0.11 2.77 5.87 71.24 0.42 3.19 16 20 O -0.40 -10.14 9.98 -148.98 -1.49 -11.63 16 21 C 0.08 1.54 2.68 30.67 0.08 1.62 16 22 C -0.18 -2.95 5.70 30.64 0.17 -2.77 16 23 C 0.06 0.83 6.55 86.33 0.57 1.40 16 24 N -0.69 -9.25 6.87 -514.00 -3.53 -12.78 16 25 C 0.06 0.80 6.55 86.33 0.57 1.36 16 26 C -0.15 -2.43 5.73 30.65 0.18 -2.25 16 27 C -0.10 -3.19 9.68 22.23 0.22 -2.98 16 28 C -0.12 -4.50 9.69 22.55 0.22 -4.29 16 29 H 0.31 13.74 8.29 -92.70 -0.77 12.97 16 30 H 0.18 5.65 8.06 -2.91 -0.02 5.63 16 31 H 0.18 5.55 8.06 -2.91 -0.02 5.53 16 32 H 0.11 5.14 6.95 -2.91 -0.02 5.12 16 33 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.06 1.42 7.90 -2.38 -0.02 1.40 16 35 H 0.07 1.48 8.03 -2.39 -0.02 1.46 16 36 H 0.07 1.14 7.79 -2.39 -0.02 1.12 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.17 7.96 -2.39 -0.02 1.16 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.35 4.30 8.86 -89.70 -0.79 3.50 16 42 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -62.79 380.66 0.03 -62.76 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.14 Total: 25.67 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 5.68 Total: -23.57 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -6.06 Total: -102.00 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.49 Total: -11.63 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.76 Total: 48.77 kcal Total: -62.79 0.03 -62.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245403515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.203 kcal (2) G-P(sol) polarization free energy of solvation -62.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds