Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 119.99520 * 2 1 4 4 H 1.48503 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47080 * 299.99870 * 3 2 1 6 6 H 1.48500 * 109.47299 * 59.99911 * 3 2 1 7 7 C 1.40141 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.41095 * 119.99812 * 0.02562 * 7 2 1 10 10 N 1.33643 * 119.13340 * 180.02562 * 9 7 2 11 11 C 1.31585 * 120.83186 * 179.97438 * 10 9 7 12 12 C 1.40426 * 119.09410 * 0.02562 * 11 10 9 13 13 C 1.47936 * 120.78965 * 180.02562 * 12 11 10 14 14 C 1.39652 * 120.14954 * 359.71606 * 13 12 11 15 15 C 1.37921 * 119.84960 * 179.72755 * 14 13 12 16 16 C 1.38414 * 120.14653 * 0.57629 * 15 14 13 17 17 C 1.50696 * 119.84752 * 179.71819 * 16 15 14 18 18 O 1.42892 * 109.47490 * 269.98032 * 17 16 15 19 19 C 1.42902 * 114.00460 * 180.02562 * 18 17 16 20 20 C 1.53117 * 109.52212 * 269.68491 * 19 18 17 21 21 C 1.53037 * 109.27706 * 182.43522 * 20 19 18 22 22 N 1.46845 * 109.52199 * 59.17950 * 21 20 19 23 23 C 1.46845 * 111.20014 * 298.25508 * 22 21 20 24 24 C 1.53038 * 109.51926 * 61.74446 * 23 22 21 25 25 C 1.38406 * 120.29884 * 359.70399 * 16 15 14 26 26 C 1.37916 * 120.15006 * 359.97438 * 25 16 15 27 27 C 1.40422 * 118.41749 * 0.26897 * 12 11 10 28 28 N 1.31587 * 119.09495 * 359.42337 * 27 12 11 29 29 H 0.96999 * 120.00322 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.45016 * 180.02562 * 11 10 9 31 31 H 1.07995 * 120.07566 * 0.02562 * 14 13 12 32 32 H 1.07998 * 119.92810 * 180.30119 * 15 14 13 33 33 H 1.09004 * 109.46974 * 29.98636 * 17 16 15 34 34 H 1.09008 * 109.46866 * 149.98163 * 17 16 15 35 35 H 1.09006 * 109.51974 * 29.87500 * 19 18 17 36 36 H 1.08995 * 109.50564 * 302.38095 * 20 19 18 37 37 H 1.09000 * 109.50541 * 62.49828 * 20 19 18 38 38 H 1.08999 * 109.46613 * 299.16488 * 21 20 19 39 39 H 1.08997 * 109.46362 * 179.19240 * 21 20 19 40 40 H 1.00902 * 111.00242 * 62.35262 * 22 21 20 41 41 H 1.08993 * 109.46534 * 301.72783 * 23 22 21 42 42 H 1.08998 * 109.46197 * 181.75734 * 23 22 21 43 43 H 1.09008 * 109.50015 * 180.88236 * 24 23 22 44 44 H 1.08999 * 109.50818 * 60.76592 * 24 23 22 45 45 H 1.08001 * 119.92495 * 180.02562 * 25 16 15 46 46 H 1.07999 * 120.07993 * 180.02562 * 26 25 16 47 47 H 1.08001 * 120.45488 * 179.72996 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7005 1.3465 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0074 -1.2136 0.0005 8 1 3.0873 -1.2136 0.0010 9 6 1.3020 -2.4356 0.0005 10 7 1.9876 -3.5827 0.0016 11 6 1.3638 -4.7412 0.0021 12 6 -0.0403 -4.7607 0.0010 13 6 -0.7799 -6.0419 0.0022 14 6 -0.0847 -7.2531 -0.0016 15 6 -0.7805 -8.4440 0.0051 16 6 -2.1646 -8.4404 0.0036 17 6 -2.9180 -9.7455 0.0046 18 8 -3.1551 -10.1598 -1.3422 19 6 -3.8677 -11.3934 -1.4542 20 6 -2.8729 -12.5565 -1.5001 21 6 -3.6386 -13.8692 -1.6810 22 7 -4.4155 -13.8166 -2.9260 23 6 -5.4099 -12.7368 -2.8861 24 6 -4.6971 -11.3903 -2.7412 25 6 -2.8598 -7.2436 0.0015 26 6 -2.1765 -6.0456 0.0014 27 6 -0.7256 -3.5351 -0.0064 28 7 -0.0344 -2.4154 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 1.9241 -5.6646 0.0034 31 1 0.9952 -7.2573 -0.0050 32 1 -0.2441 -9.3813 0.0071 33 1 -2.3292 -10.5045 0.5199 34 1 -3.8709 -9.6146 0.5176 35 1 -4.5284 -11.5115 -0.5953 36 1 -2.1877 -12.4166 -2.3361 37 1 -2.3087 -12.5899 -0.5681 38 1 -4.3135 -14.0153 -0.8377 39 1 -2.9323 -14.6980 -1.7285 40 1 -3.8092 -13.7204 -3.7268 41 1 -6.0765 -12.8881 -2.0372 42 1 -5.9900 -12.7432 -3.8089 43 1 -5.4362 -10.5904 -2.6959 44 1 -4.0407 -11.2320 -3.5968 45 1 -3.9398 -7.2479 0.0008 46 1 -2.7201 -5.1124 0.0002 47 1 -1.8054 -3.5117 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245409256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = 12.832061 kcal Electronic energy + Delta-G solvation = -27316.246889 eV Core-core repulsion = 23463.035557 eV Total energy + Delta-G solvation = -3853.211331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.75988 -39.31620 -38.37058 -36.85898 -34.14719 -32.70168 -32.00627 -31.28937 -30.94819 -30.51763 -29.41695 -27.02509 -24.88318 -23.55477 -23.45790 -23.29528 -22.15563 -21.39004 -20.84646 -20.30957 -18.05517 -17.14472 -16.76704 -16.32674 -15.98924 -15.50069 -15.23957 -15.08075 -14.93963 -14.72804 -14.52307 -14.03433 -13.61781 -13.48580 -13.22398 -13.18878 -12.92210 -12.77409 -12.65254 -12.53837 -12.19223 -12.18017 -11.87599 -11.63297 -11.44620 -11.41925 -11.20767 -11.00396 -10.87075 -10.81618 -10.51822 -10.37239 -9.78480 -9.63572 -9.32383 -9.26061 -8.97746 -8.86574 -8.54225 -7.46804 -7.39912 -6.74564 -4.87191 1.36658 1.85037 2.58452 2.88585 2.94645 2.99639 3.01031 3.54594 3.72670 3.91969 4.26514 4.41309 4.46232 4.60067 4.68343 4.76764 4.91024 4.97485 4.99376 5.03374 5.18383 5.31342 5.37765 5.38613 5.40276 5.45379 5.51798 5.54592 5.60193 5.67502 5.76896 5.78183 5.78566 5.84256 5.91024 6.06720 6.17810 6.33744 6.43348 6.56153 6.68882 6.78675 6.84288 6.91554 6.91781 7.00040 7.11658 7.38645 7.39651 7.53638 7.96343 8.28673 8.36765 8.93687 9.89796 10.09105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034807 B = 0.001677 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.248398 B =16695.300027 C =17032.527810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.059 3.941 3 Si 0.923 3.077 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.373 4.373 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.593 5.593 11 C 0.190 3.810 12 C -0.334 4.334 13 C 0.049 3.951 14 C -0.152 4.152 15 C -0.084 4.084 16 C -0.140 4.140 17 C 0.114 3.886 18 O -0.374 6.374 19 C 0.089 3.911 20 C -0.180 4.180 21 C 0.059 3.941 22 N -0.688 5.688 23 C 0.059 3.941 24 C -0.155 4.155 25 C -0.084 4.084 26 C -0.150 4.150 27 C 0.183 3.817 28 N -0.508 5.508 29 H 0.280 0.720 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.343 0.657 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -19.501 -1.821 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.405 4.405 8 H 0.116 0.884 9 C 0.145 3.855 10 N -0.311 5.311 11 C 0.014 3.986 12 C -0.344 4.344 13 C 0.047 3.953 14 C -0.170 4.170 15 C -0.102 4.102 16 C -0.140 4.140 17 C 0.038 3.962 18 O -0.294 6.294 19 C 0.031 3.969 20 C -0.220 4.220 21 C -0.071 4.071 22 N -0.316 5.316 23 C -0.071 4.071 24 C -0.195 4.195 25 C -0.102 4.102 26 C -0.168 4.168 27 C 0.006 3.994 28 N -0.224 5.224 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.161 0.839 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.131 0.869 46 H 0.138 0.862 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.342 -18.666 -1.772 20.948 hybrid contribution 0.305 0.497 0.157 0.604 sum -9.037 -18.169 -1.614 20.357 Atomic orbital electron populations 1.70127 1.07514 1.28722 1.25062 1.26257 0.95155 1.01863 0.93720 0.86007 0.80871 0.79684 0.78881 1.17894 1.19417 1.19424 1.19581 0.95199 0.87815 1.37945 0.88403 1.19992 0.86022 0.90916 0.88534 1.68655 1.40774 0.98449 1.23198 1.22700 0.90548 0.95839 0.89486 1.19761 0.95272 0.93203 1.26134 1.18767 0.92393 0.92230 0.91922 1.21105 0.99610 0.91649 1.04652 1.20766 0.93222 0.97532 0.98680 1.19289 0.93548 0.93184 1.08016 1.21255 0.97863 0.93571 0.83515 1.88069 1.76324 1.38348 1.26623 1.22053 0.92502 0.84454 0.97873 1.22811 0.99532 0.96253 1.03392 1.22010 0.96276 0.95945 0.92873 1.60640 1.19380 1.46565 1.05062 1.22032 0.94714 0.87395 1.02920 1.22378 0.99777 0.99601 0.97706 1.20780 0.98930 0.91875 0.98585 1.21132 0.93770 0.97582 1.04340 1.23074 0.99105 0.87925 0.89311 1.69356 1.08073 1.26752 1.18176 0.90908 0.85017 0.86306 0.87001 0.93197 0.93133 0.92349 0.90993 0.91194 0.90871 0.90351 0.83940 0.90785 0.90070 0.90651 0.91000 0.86928 0.86168 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.48 11.40 55.56 0.63 -16.84 16 2 C 0.06 1.42 5.50 -17.33 -0.10 1.33 16 3 Si 0.92 17.58 29.56 -169.99 -5.02 12.56 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.37 -9.83 9.35 -37.78 -0.35 -10.19 16 8 H 0.10 2.47 7.85 -52.49 -0.41 2.05 16 9 C 0.38 10.41 7.35 -158.16 -1.16 9.25 16 10 N -0.59 -15.42 10.34 -12.41 -0.13 -15.55 16 11 C 0.19 4.31 10.70 -16.83 -0.18 4.13 16 12 C -0.33 -7.33 5.93 -104.28 -0.62 -7.95 16 13 C 0.05 0.92 5.88 -104.87 -0.62 0.30 16 14 C -0.15 -2.54 9.45 -39.17 -0.37 -2.91 16 15 C -0.08 -1.25 9.68 -39.63 -0.38 -1.63 16 16 C -0.14 -2.03 5.52 -104.50 -0.58 -2.60 16 17 C 0.11 1.34 5.87 36.00 0.21 1.55 16 18 O -0.37 -4.68 9.98 -35.23 -0.35 -5.04 16 19 C 0.09 0.82 2.68 -26.61 -0.07 0.75 16 20 C -0.18 -1.43 5.70 -26.65 -0.15 -1.59 16 21 C 0.06 0.39 6.55 -3.84 -0.03 0.36 16 22 N -0.69 -4.77 6.87 -113.82 -0.78 -5.56 16 23 C 0.06 0.39 6.55 -3.83 -0.03 0.37 16 24 C -0.16 -1.26 5.73 -26.65 -0.15 -1.42 16 25 C -0.08 -1.26 9.68 -39.64 -0.38 -1.64 16 26 C -0.15 -2.55 9.45 -39.17 -0.37 -2.92 16 27 C 0.18 4.32 10.70 -16.83 -0.18 4.14 16 28 N -0.51 -13.70 7.83 -12.41 -0.10 -13.79 16 29 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 30 H 0.13 2.53 6.33 -52.48 -0.33 2.20 16 31 H 0.12 1.84 6.29 -52.49 -0.33 1.51 16 32 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 34 H 0.05 0.53 8.03 -51.92 -0.42 0.11 16 35 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.55 7.96 -51.93 -0.41 0.13 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.34 2.14 8.86 -39.29 -0.35 1.80 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.12 1.94 6.29 -52.49 -0.33 1.61 16 47 H 0.13 2.71 6.33 -52.49 -0.33 2.38 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -29.88 384.62 -12.13 -42.01 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.67 Total: 7.07 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -5.51 Total: -10.66 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.37 Total: -51.74 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.35 Total: -5.04 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.88 -12.13 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245409256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.844 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds