Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 119.99520 * 2 1 4 4 H 1.48503 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47080 * 299.99870 * 3 2 1 6 6 H 1.48500 * 109.47299 * 59.99911 * 3 2 1 7 7 C 1.40141 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.41095 * 119.99812 * 0.02562 * 7 2 1 10 10 N 1.33643 * 119.13340 * 180.02562 * 9 7 2 11 11 C 1.31585 * 120.83186 * 179.97438 * 10 9 7 12 12 C 1.40426 * 119.09410 * 0.02562 * 11 10 9 13 13 C 1.47936 * 120.78965 * 180.02562 * 12 11 10 14 14 C 1.39652 * 120.14954 * 359.71606 * 13 12 11 15 15 C 1.37921 * 119.84960 * 179.72755 * 14 13 12 16 16 C 1.38414 * 120.14653 * 0.57629 * 15 14 13 17 17 C 1.50696 * 119.84752 * 179.71819 * 16 15 14 18 18 O 1.42892 * 109.47490 * 269.98032 * 17 16 15 19 19 C 1.42902 * 114.00460 * 180.02562 * 18 17 16 20 20 C 1.53117 * 109.52212 * 269.68491 * 19 18 17 21 21 C 1.53037 * 109.27706 * 182.43522 * 20 19 18 22 22 N 1.46845 * 109.52199 * 59.17950 * 21 20 19 23 23 C 1.46845 * 111.20014 * 298.25508 * 22 21 20 24 24 C 1.53038 * 109.51926 * 61.74446 * 23 22 21 25 25 C 1.38406 * 120.29884 * 359.70399 * 16 15 14 26 26 C 1.37916 * 120.15006 * 359.97438 * 25 16 15 27 27 C 1.40422 * 118.41749 * 0.26897 * 12 11 10 28 28 N 1.31587 * 119.09495 * 359.42337 * 27 12 11 29 29 H 0.96999 * 120.00322 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.45016 * 180.02562 * 11 10 9 31 31 H 1.07995 * 120.07566 * 0.02562 * 14 13 12 32 32 H 1.07998 * 119.92810 * 180.30119 * 15 14 13 33 33 H 1.09004 * 109.46974 * 29.98636 * 17 16 15 34 34 H 1.09008 * 109.46866 * 149.98163 * 17 16 15 35 35 H 1.09006 * 109.51974 * 29.87500 * 19 18 17 36 36 H 1.08995 * 109.50564 * 302.38095 * 20 19 18 37 37 H 1.09000 * 109.50541 * 62.49828 * 20 19 18 38 38 H 1.08999 * 109.46613 * 299.16488 * 21 20 19 39 39 H 1.08997 * 109.46362 * 179.19240 * 21 20 19 40 40 H 1.00902 * 111.00242 * 62.35262 * 22 21 20 41 41 H 1.08993 * 109.46534 * 301.72783 * 23 22 21 42 42 H 1.08998 * 109.46197 * 181.75734 * 23 22 21 43 43 H 1.09008 * 109.50015 * 180.88236 * 24 23 22 44 44 H 1.08999 * 109.50818 * 60.76592 * 24 23 22 45 45 H 1.08001 * 119.92495 * 180.02562 * 25 16 15 46 46 H 1.07999 * 120.07993 * 180.02562 * 26 25 16 47 47 H 1.08001 * 120.45488 * 179.72996 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7005 1.3465 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0074 -1.2136 0.0005 8 1 3.0873 -1.2136 0.0010 9 6 1.3020 -2.4356 0.0005 10 7 1.9876 -3.5827 0.0016 11 6 1.3638 -4.7412 0.0021 12 6 -0.0403 -4.7607 0.0010 13 6 -0.7799 -6.0419 0.0022 14 6 -0.0847 -7.2531 -0.0016 15 6 -0.7805 -8.4440 0.0051 16 6 -2.1646 -8.4404 0.0036 17 6 -2.9180 -9.7455 0.0046 18 8 -3.1551 -10.1598 -1.3422 19 6 -3.8677 -11.3934 -1.4542 20 6 -2.8729 -12.5565 -1.5001 21 6 -3.6386 -13.8692 -1.6810 22 7 -4.4155 -13.8166 -2.9260 23 6 -5.4099 -12.7368 -2.8861 24 6 -4.6971 -11.3903 -2.7412 25 6 -2.8598 -7.2436 0.0015 26 6 -2.1765 -6.0456 0.0014 27 6 -0.7256 -3.5351 -0.0064 28 7 -0.0344 -2.4154 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 1.9241 -5.6646 0.0034 31 1 0.9952 -7.2573 -0.0050 32 1 -0.2441 -9.3813 0.0071 33 1 -2.3292 -10.5045 0.5199 34 1 -3.8709 -9.6146 0.5176 35 1 -4.5284 -11.5115 -0.5953 36 1 -2.1877 -12.4166 -2.3361 37 1 -2.3087 -12.5899 -0.5681 38 1 -4.3135 -14.0153 -0.8377 39 1 -2.9323 -14.6980 -1.7285 40 1 -3.8092 -13.7204 -3.7268 41 1 -6.0765 -12.8881 -2.0372 42 1 -5.9900 -12.7432 -3.8089 43 1 -5.4362 -10.5904 -2.6959 44 1 -4.0407 -11.2320 -3.5968 45 1 -3.9398 -7.2479 0.0008 46 1 -2.7201 -5.1124 0.0002 47 1 -1.8054 -3.5117 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245409256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = -4.745535 kcal Electronic energy + Delta-G solvation = -27317.009111 eV Core-core repulsion = 23463.035557 eV Total energy + Delta-G solvation = -3853.973553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10096 -40.43432 -39.66652 -37.70429 -35.89432 -34.15904 -33.81827 -31.96518 -31.81362 -31.78846 -30.80833 -28.57657 -26.23560 -25.20619 -24.16419 -23.96379 -23.62403 -22.84177 -21.79703 -21.38193 -19.87173 -18.10751 -17.89068 -17.79049 -17.07295 -17.01232 -16.50368 -16.18889 -15.96341 -15.63175 -15.29445 -15.18602 -15.08014 -14.77558 -14.51360 -14.40032 -14.17950 -13.87215 -13.81089 -13.59065 -13.45367 -13.16847 -13.13037 -12.94036 -12.78547 -12.59206 -12.23618 -12.09195 -11.93559 -11.91315 -11.70721 -11.51767 -11.42172 -11.23703 -11.05143 -10.56303 -10.41708 -9.79819 -9.43230 -9.35035 -8.99835 -8.53792 -6.76828 -0.09425 0.58184 0.95712 1.06061 1.38161 1.50530 1.56210 2.15733 2.52996 2.75579 3.16941 3.40820 3.74398 3.79812 3.84205 3.86656 3.87576 4.00990 4.01673 4.10261 4.12394 4.15164 4.26469 4.30252 4.32245 4.34485 4.40718 4.47837 4.62348 4.67975 4.75853 4.78108 4.88048 4.92226 4.98648 5.01427 5.02061 5.11260 5.16134 5.23046 5.23544 5.30094 5.47404 5.69900 5.75557 5.88533 6.04790 6.05685 6.14871 6.30101 6.41542 6.43567 6.50296 7.08129 8.11031 8.25319 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034807 B = 0.001677 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.248398 B =16695.300027 C =17032.527810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.019 3.981 3 Si 1.004 2.996 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.095 0.905 9 C 0.349 3.651 10 N -0.618 5.618 11 C 0.173 3.827 12 C -0.317 4.317 13 C 0.012 3.988 14 C -0.150 4.150 15 C -0.088 4.088 16 C -0.127 4.127 17 C 0.114 3.886 18 O -0.398 6.398 19 C 0.084 3.916 20 C -0.174 4.174 21 C 0.062 3.938 22 N -0.694 5.694 23 C 0.064 3.936 24 C -0.152 4.152 25 C -0.089 4.089 26 C -0.152 4.152 27 C 0.162 3.838 28 N -0.538 5.538 29 H 0.289 0.711 30 H 0.165 0.835 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.346 0.654 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.138 0.862 46 H 0.122 0.878 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 -21.937 -1.664 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.206 4.206 3 Si 0.822 3.178 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.113 0.887 9 C 0.115 3.885 10 N -0.337 5.337 11 C 0.000 4.000 12 C -0.326 4.326 13 C 0.011 3.989 14 C -0.168 4.168 15 C -0.105 4.105 16 C -0.128 4.128 17 C 0.038 3.962 18 O -0.318 6.318 19 C 0.027 3.973 20 C -0.214 4.214 21 C -0.067 4.067 22 N -0.322 5.322 23 C -0.066 4.066 24 C -0.191 4.191 25 C -0.107 4.107 26 C -0.170 4.170 27 C -0.013 4.013 28 N -0.255 5.255 29 H 0.100 0.900 30 H 0.182 0.818 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.164 0.836 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.155 0.845 46 H 0.140 0.860 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.550 -21.185 -1.618 23.722 hybrid contribution 0.470 0.827 0.088 0.955 sum -10.080 -20.358 -1.530 22.769 Atomic orbital electron populations 1.70179 1.09106 1.30238 1.26013 1.27201 0.95975 1.04932 0.92454 0.84840 0.79150 0.74464 0.79355 1.17705 1.18408 1.18366 1.19855 0.95306 0.88928 1.40787 0.88731 1.20415 0.86691 0.91908 0.89501 1.68666 1.41394 0.99115 1.24531 1.23269 0.91448 0.96114 0.89136 1.20042 0.95246 0.94256 1.23064 1.18730 0.93191 0.91450 0.95566 1.21287 1.00275 0.91589 1.03673 1.21087 0.93685 0.97882 0.97895 1.19751 0.93775 0.94451 1.04784 1.21295 0.98670 0.92455 0.83784 1.88023 1.77018 1.39968 1.26808 1.22258 0.92814 0.83567 0.98674 1.22758 0.99173 0.96425 1.03044 1.22020 0.96377 0.95457 0.92890 1.60665 1.19631 1.46550 1.05385 1.22029 0.94559 0.86322 1.03642 1.22369 0.99439 1.00490 0.96836 1.21074 1.00301 0.91286 0.97990 1.21275 0.93238 0.98740 1.03789 1.23523 1.00174 0.88136 0.89489 1.69318 1.08158 1.28331 1.19650 0.90014 0.81814 0.85437 0.84274 0.91410 0.91455 0.91226 0.92180 0.90858 0.90364 0.89481 0.83626 0.90260 0.89193 0.90944 0.92212 0.84456 0.86029 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.38 11.40 21.85 0.25 -38.13 16 2 C 0.02 0.96 5.50 85.33 0.47 1.43 16 3 Si 1.00 36.83 29.56 68.60 2.03 38.86 16 4 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.42 -23.05 9.35 23.43 0.22 -22.84 16 8 H 0.09 5.05 7.85 -2.92 -0.02 5.03 16 9 C 0.35 20.23 7.35 134.91 0.99 21.22 16 10 N -0.62 -33.48 10.34 -193.17 -2.00 -35.48 16 11 C 0.17 8.04 10.70 85.26 0.91 8.95 16 12 C -0.32 -14.14 5.93 -19.64 -0.12 -14.26 16 13 C 0.01 0.45 5.88 -20.02 -0.12 0.34 16 14 C -0.15 -4.75 9.45 22.54 0.21 -4.53 16 15 C -0.09 -2.34 9.68 22.24 0.22 -2.12 16 16 C -0.13 -3.28 5.52 -19.78 -0.11 -3.38 16 17 C 0.11 2.24 5.87 71.23 0.42 2.66 16 18 O -0.40 -8.81 9.98 -148.98 -1.49 -10.29 16 19 C 0.08 1.32 2.68 30.67 0.08 1.41 16 20 C -0.17 -2.33 5.70 30.65 0.17 -2.15 16 21 C 0.06 0.66 6.55 86.33 0.57 1.23 16 22 N -0.69 -8.03 6.87 -514.03 -3.53 -11.56 16 23 C 0.06 0.70 6.55 86.33 0.57 1.26 16 24 C -0.15 -2.17 5.73 30.65 0.18 -2.00 16 25 C -0.09 -2.44 9.68 22.23 0.22 -2.22 16 26 C -0.15 -5.00 9.45 22.54 0.21 -4.78 16 27 C 0.16 7.90 10.70 85.26 0.91 8.81 16 28 N -0.54 -30.39 7.83 -193.17 -1.51 -31.91 16 29 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 30 H 0.16 6.25 6.33 -2.91 -0.02 6.23 16 31 H 0.13 3.72 6.29 -2.91 -0.02 3.70 16 32 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 33 H 0.07 1.12 7.90 -2.38 -0.02 1.10 16 34 H 0.07 1.12 8.03 -2.38 -0.02 1.10 16 35 H 0.07 0.94 7.79 -2.38 -0.02 0.92 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.93 7.96 -2.39 -0.02 0.91 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.35 3.67 8.86 -89.69 -0.79 2.88 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.12 3.86 6.29 -2.91 -0.02 3.84 16 47 H 0.15 6.46 6.33 -2.91 -0.02 6.44 16 Total: -1.00 -67.74 384.62 -0.04 -67.78 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.20 Total: 31.70 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 6.00 Total: -10.98 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -6.79 Total: -117.08 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.49 Total: -10.29 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -67.74 -0.04 -67.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245409256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.038 kcal (2) G-P(sol) polarization free energy of solvation -67.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds