Wall clock time and date at job start Sat Apr 11 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00352 * 2 1 4 4 H 1.48496 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47027 * 299.99773 * 3 2 1 6 6 H 1.48498 * 109.47104 * 59.99678 * 3 2 1 7 7 C 1.38814 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99862 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00131 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47343 * 324.99986 * 10 9 7 12 12 C 1.53006 * 109.47024 * 205.00246 * 10 9 7 13 13 N 1.46496 * 109.47080 * 55.00172 * 12 10 9 14 14 C 1.34780 * 120.00148 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99811 * 0.02562 * 14 13 12 16 16 C 1.47582 * 120.00004 * 179.97438 * 14 13 12 17 17 C 1.39651 * 120.19471 * 6.47858 * 16 14 13 18 18 C 1.37824 * 119.92019 * 180.31890 * 17 16 14 19 19 C 1.38539 * 120.30970 * 359.65770 * 18 17 16 20 20 C 1.38077 * 120.38645 * 0.02562 * 19 18 17 21 21 C 1.38753 * 120.07582 * 0.03012 * 20 19 18 22 22 N 1.39667 * 120.15177 * 179.97438 * 21 20 19 23 23 C 1.36649 * 125.68480 * 57.64790 * 22 21 20 24 24 C 1.34815 * 108.19530 * 179.83197 * 23 22 21 25 25 C 1.40983 * 107.48586 * 0.42157 * 24 23 22 26 26 C 1.34812 * 107.48852 * 359.73472 * 25 24 23 27 27 C 1.53004 * 109.47249 * 85.00516 * 10 9 7 28 28 C 1.53001 * 117.49679 * 8.74540 * 27 10 9 29 29 C 1.53001 * 117.49362 * 300.08910 * 27 10 9 30 30 H 0.97000 * 119.99649 * 0.02562 * 1 2 3 31 31 H 0.97009 * 120.00058 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47271 * 295.00185 * 12 10 9 33 33 H 1.09000 * 109.46921 * 175.00101 * 12 10 9 34 34 H 0.97001 * 120.00392 * 359.97438 * 13 12 10 35 35 H 1.08009 * 120.04047 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.84917 * 179.68047 * 18 17 16 37 37 H 1.07992 * 119.80335 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.95706 * 179.97438 * 20 19 18 39 39 H 1.08005 * 125.90430 * 359.97438 * 23 22 21 40 40 H 1.08003 * 126.25291 * 180.13863 * 24 23 22 41 41 H 1.08002 * 126.25980 * 179.71616 * 25 24 23 42 42 H 1.08000 * 125.90521 * 179.97438 * 26 25 24 43 43 H 1.08990 * 115.54938 * 154.41644 * 27 10 9 44 44 H 1.08997 * 117.49775 * 0.02562 * 28 27 10 45 45 H 1.08994 * 117.49852 * 145.01787 * 28 27 10 46 46 H 1.09005 * 117.49396 * 214.97742 * 29 27 10 47 47 H 1.08993 * 117.50290 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 2.9687 -3.5511 -0.5868 12 6 1.1807 -4.7527 -0.6060 13 7 0.7342 -4.3372 -1.9380 14 6 -0.0548 -5.1500 -2.6683 15 8 -0.3964 -6.2279 -2.2214 16 6 -0.5051 -4.7311 -4.0098 17 6 -0.0095 -3.5578 -4.5825 18 6 -0.4388 -3.1685 -5.8329 19 6 -1.3554 -3.9397 -6.5289 20 6 -1.8487 -5.1055 -5.9776 21 6 -1.4284 -5.5120 -4.7193 22 7 -1.9268 -6.6907 -4.1599 23 6 -1.8398 -7.9359 -4.7160 24 6 -2.4310 -8.8126 -3.8797 25 6 -2.9093 -8.0843 -2.7714 26 6 -2.5878 -6.7899 -2.9679 27 6 2.4217 -4.0344 1.4401 28 6 1.8131 -3.1964 2.5663 29 6 3.2992 -3.0583 2.2264 30 1 -0.4849 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 0.3131 -4.9200 0.0322 33 1 1.7556 -5.6752 -0.6869 34 1 1.0064 -3.4770 -2.2944 35 1 0.7052 -2.9532 -4.0437 36 1 -0.0587 -2.2581 -6.2725 37 1 -1.6859 -3.6272 -7.5084 38 1 -2.5633 -5.7012 -6.5261 39 1 -1.3754 -8.1765 -5.6610 40 1 -2.5253 -9.8775 -4.0332 41 1 -3.4371 -8.4892 -1.9206 42 1 -2.8141 -5.9725 -2.2992 43 1 2.5629 -5.0992 1.6250 44 1 1.1532 -2.3764 2.2831 45 1 1.5542 -3.7099 3.4922 46 1 4.0175 -3.4811 2.9289 47 1 3.6176 -2.1474 1.7196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266429311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:53 Heat of formation + Delta-G solvation = 101.142069 kcal Electronic energy + Delta-G solvation = -29280.455745 eV Core-core repulsion = 25431.073823 eV Total energy + Delta-G solvation = -3849.381922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50576 -39.60370 -38.38720 -37.53139 -34.60612 -33.37697 -32.98449 -31.81704 -30.61683 -28.92119 -28.55695 -28.02999 -24.48552 -23.54022 -23.05136 -22.39613 -21.53444 -20.46932 -20.01803 -19.87803 -19.17791 -18.41255 -17.53598 -17.07652 -16.10843 -15.48122 -15.24555 -15.12216 -14.81378 -14.74419 -14.52019 -14.02675 -13.76255 -13.62524 -13.46525 -13.29047 -12.98120 -12.96203 -12.56218 -12.14821 -12.11918 -12.03923 -11.79785 -11.58631 -11.32166 -11.21024 -10.94925 -10.90169 -10.55646 -10.14497 -9.80236 -9.70954 -9.49666 -9.41473 -9.25527 -9.20699 -9.04757 -8.68512 -8.22019 -7.77423 -7.13489 -5.90167 -3.20563 0.59474 0.97436 2.52341 2.93726 3.06562 3.32854 3.35427 3.40068 3.41821 3.42289 3.70669 4.44124 4.58011 4.59018 4.65176 4.80507 5.02155 5.09645 5.15190 5.32071 5.39973 5.41413 5.52325 5.54590 5.62638 5.69030 5.71199 5.80897 5.86540 5.93444 5.98105 6.01369 6.02240 6.07840 6.18319 6.35621 6.41043 6.48306 6.51084 6.52642 6.61307 6.69171 6.83992 6.96609 7.21315 7.24080 7.43172 7.60155 7.69529 7.83636 8.26686 8.47036 9.39332 9.92761 10.29174 11.31135 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003460 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.830879 B = 8091.519376 C = 9770.907703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.121 3.879 13 N -0.705 5.705 14 C 0.544 3.456 15 O -0.524 6.524 16 C -0.130 4.130 17 C -0.067 4.067 18 C -0.122 4.122 19 C -0.084 4.084 20 C -0.129 4.129 21 C 0.173 3.827 22 N -0.401 5.401 23 C -0.021 4.021 24 C -0.190 4.190 25 C -0.213 4.213 26 C 0.059 3.941 27 C -0.178 4.178 28 C -0.162 4.162 29 C -0.175 4.175 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.408 0.592 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -10.331 -11.206 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.357 5.357 14 C 0.329 3.671 15 O -0.402 6.402 16 C -0.134 4.134 17 C -0.086 4.086 18 C -0.140 4.140 19 C -0.103 4.103 20 C -0.149 4.149 21 C 0.081 3.919 22 N -0.076 5.076 23 C -0.147 4.147 24 C -0.215 4.215 25 C -0.236 4.236 26 C -0.068 4.068 27 C -0.199 4.199 28 C -0.199 4.199 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.246 0.754 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.710 -10.689 -10.984 15.422 hybrid contribution 0.434 1.450 0.095 1.517 sum -1.275 -9.239 -10.889 14.337 Atomic orbital electron populations 1.69666 1.05016 1.25657 1.57106 1.24704 0.95397 0.97525 1.02717 0.86214 0.78880 0.84421 0.77224 1.20579 1.21942 1.21884 1.19210 0.90944 0.83773 1.43250 0.90997 1.42487 1.05834 0.99480 1.88131 1.19999 0.94045 0.86043 0.91816 0.92537 1.21593 0.98854 0.97460 0.82384 1.45907 1.50270 1.21569 1.17914 1.18083 0.79521 0.84871 0.84576 1.90854 1.55850 1.21684 1.71798 1.20130 0.99265 0.97496 0.96541 1.21432 0.98018 0.93920 0.95236 1.21238 0.97793 1.00299 0.94710 1.21222 0.95724 0.93493 0.99875 1.21118 1.01125 0.97829 0.94793 1.17633 0.94279 0.86830 0.93180 1.41162 1.44026 1.04476 1.17886 1.21677 1.08861 0.82946 1.01225 1.20785 1.05846 0.98459 0.96375 1.20722 1.09404 0.92681 1.00820 1.21552 0.98554 0.98740 0.87977 1.23053 1.06039 0.95374 0.95480 1.22909 0.96684 1.03481 0.96870 1.22849 0.93495 1.01849 1.03014 0.93476 0.77938 0.91515 0.91743 0.75432 0.84204 0.84671 0.84830 0.84826 0.82820 0.85043 0.85041 0.83148 0.89612 0.86359 0.91270 0.91010 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.54 13.06 55.49 0.72 -24.81 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -5.81 8.16 -15.06 -0.12 -5.93 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.36 16 9 N -0.72 -15.41 3.08 -53.42 -0.16 -15.57 16 10 C 0.19 3.43 2.86 -67.93 -0.19 3.23 16 11 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 12 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 13 N -0.70 -11.45 5.34 -61.33 -0.33 -11.78 16 14 C 0.54 9.14 7.59 -12.45 -0.09 9.05 16 15 O -0.52 -10.04 12.58 5.29 0.07 -9.97 16 16 C -0.13 -1.89 5.87 -104.82 -0.62 -2.51 16 17 C -0.07 -0.83 9.52 -39.21 -0.37 -1.20 16 18 C -0.12 -1.23 10.02 -39.62 -0.40 -1.63 16 19 C -0.08 -0.77 10.03 -39.53 -0.40 -1.17 16 20 C -0.13 -1.40 9.78 -39.45 -0.39 -1.79 16 21 C 0.17 2.40 5.85 -83.36 -0.49 1.92 16 22 N -0.40 -6.00 2.10 -60.69 -0.13 -6.13 16 23 C -0.02 -0.29 11.23 -16.62 -0.19 -0.48 16 24 C -0.19 -2.63 10.86 -39.76 -0.43 -3.07 16 25 C -0.21 -3.20 10.86 -39.76 -0.43 -3.63 16 26 C 0.06 0.95 7.99 -16.61 -0.13 0.81 16 27 C -0.18 -3.05 5.71 -90.62 -0.52 -3.56 16 28 C -0.16 -2.99 9.74 -26.69 -0.26 -3.25 16 29 C -0.18 -3.07 9.87 -26.69 -0.26 -3.33 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 9.19 7.80 -40.82 -0.32 8.87 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.41 6.58 6.21 -40.82 -0.25 6.32 16 35 H 0.14 1.68 6.46 -52.48 -0.34 1.34 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.15 2.42 7.95 -52.49 -0.42 2.01 16 43 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 44 H 0.12 2.61 6.68 -51.93 -0.35 2.26 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -29.08 387.33 -10.99 -40.07 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -6.57 Total: 21.40 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -5.41 Total: -14.81 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.11 Total: -58.29 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.08 -10.99 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266429311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.210 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds