Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36539 * 120.08875 * 2 1 4 4 C 1.40723 * 118.24269 * 179.97438 * 3 2 1 5 5 C 1.40424 * 121.28947 * 179.97438 * 4 3 2 6 6 C 1.36133 * 119.64676 * 179.97438 * 5 4 3 7 7 C 1.39429 * 120.92149 * 0.03639 * 6 5 4 8 8 C 1.35987 * 121.09287 * 359.97438 * 7 6 5 9 9 C 1.40840 * 119.73166 * 359.97438 * 8 7 6 10 10 N 1.33239 * 120.98126 * 180.25497 * 9 8 7 11 11 C 1.31904 * 121.29340 * 180.26406 * 10 9 8 12 12 C 1.48276 * 119.23964 * 179.75393 * 11 10 9 13 13 O 1.21507 * 119.99968 * 173.86263 * 12 11 10 14 14 N 1.34781 * 120.00174 * 353.86697 * 12 11 10 15 15 C 1.47023 * 125.64562 * 359.95776 * 14 12 11 16 16 C 1.54328 * 107.27058 * 178.97973 * 15 14 12 17 17 C 1.55157 * 102.94035 * 337.80554 * 16 15 14 18 18 H 1.09003 * 111.03472 * 277.41483 * 17 16 15 19 19 C 1.52999 * 111.00259 * 153.57522 * 17 16 15 20 20 N 1.46507 * 109.46800 * 181.34728 * 19 17 16 21 21 C 1.36933 * 119.99624 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00576 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99854 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00195 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99850 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46855 * 180.02562 * 25 23 21 27 27 H 1.48497 * 109.47540 * 299.99938 * 25 23 21 28 28 H 1.48503 * 109.47093 * 60.00360 * 25 23 21 29 29 C 1.47420 * 125.64898 * 179.97438 * 14 12 11 30 30 H 1.09000 * 109.47178 * 263.13066 * 1 2 3 31 31 H 1.08996 * 109.46968 * 23.13537 * 1 2 3 32 32 H 1.08997 * 109.47093 * 143.13009 * 1 2 3 33 33 H 1.08000 * 120.87665 * 359.95579 * 3 2 1 34 34 H 1.08004 * 120.17736 * 0.02562 * 5 4 3 35 35 H 1.08007 * 119.53542 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.45754 * 180.02562 * 7 6 5 37 37 H 1.08000 * 120.14119 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.88125 * 298.39474 * 15 14 12 39 39 H 1.08993 * 109.88451 * 59.40299 * 15 14 12 40 40 H 1.08993 * 110.71758 * 219.44229 * 16 15 14 41 41 H 1.08997 * 110.71920 * 96.16907 * 16 15 14 42 42 H 1.08997 * 109.47007 * 61.35409 * 19 17 16 43 43 H 1.08994 * 109.47590 * 301.34730 * 19 17 16 44 44 H 0.96994 * 119.99826 * 0.02562 * 20 19 17 45 45 H 0.96998 * 119.99753 * 359.97438 * 24 23 21 46 46 H 1.09003 * 110.36466 * 85.25296 * 29 14 12 47 47 H 1.09001 * 110.46227 * 322.97777 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1814 0.0000 4 6 3.5980 1.1361 0.0006 5 6 4.3656 2.3120 0.0001 6 6 5.7244 2.2291 0.0011 7 6 6.3668 0.9916 0.0020 8 6 5.6568 -0.1682 0.0023 9 6 4.2490 -0.1254 0.0023 10 7 3.5287 -1.2463 0.0076 11 6 2.2101 -1.2134 0.0024 12 6 1.4538 -2.4887 0.0032 13 8 0.2436 -2.4773 0.1110 14 7 2.1087 -3.6607 -0.1155 15 6 3.5639 -3.8189 -0.2535 16 6 3.8549 -5.3325 -0.3310 17 6 2.6031 -5.9616 0.3357 18 1 2.6950 -5.9585 1.4219 19 6 2.3571 -7.3784 -0.1868 20 7 1.1517 -7.9274 0.4394 21 6 0.7314 -9.1918 0.1236 22 1 1.2887 -9.7846 -0.5867 23 6 -0.4109 -9.7118 0.7165 24 7 -1.0904 -8.9894 1.5818 25 14 -0.9846 -11.4364 0.2852 26 1 -2.2192 -11.7525 1.0476 27 1 -1.2688 -11.5141 -1.1702 28 1 0.0776 -12.4135 0.6351 29 6 1.4846 -4.9962 -0.1290 30 1 -0.3633 -0.1229 1.0203 31 1 -0.3633 0.9450 -0.4038 32 1 -0.3633 -0.8221 -0.6166 33 1 1.6674 2.1257 -0.0007 34 1 3.8805 3.2769 -0.0004 35 1 6.3130 3.1347 0.0012 36 1 7.4461 0.9534 0.0033 37 1 6.1702 -1.1183 0.0034 38 1 3.9053 -3.3286 -1.1651 39 1 4.0674 -3.3861 0.6109 40 1 4.7562 -5.5811 0.2292 41 1 3.9428 -5.6557 -1.3683 42 1 3.2122 -8.0090 0.0565 43 1 2.2234 -7.3488 -1.2681 44 1 0.6515 -7.3952 1.0776 45 1 -0.7927 -8.0937 1.8055 46 1 1.1576 -5.2519 -1.1370 47 1 0.6425 -5.0303 0.5622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267051114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = 43.456892 kcal Electronic energy + Delta-G solvation = -28618.489472 eV Core-core repulsion = 24766.606133 eV Total energy + Delta-G solvation = -3851.883339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45921 -39.85997 -38.04654 -37.05934 -35.03674 -34.36091 -32.39651 -31.96467 -30.77546 -30.16766 -28.52896 -27.36949 -26.12793 -24.61964 -23.29422 -22.89032 -22.45077 -22.04093 -20.39240 -19.87034 -18.24621 -17.98971 -17.19971 -16.88728 -16.31944 -15.89216 -15.49659 -15.12409 -14.85558 -14.55578 -14.39374 -14.26810 -13.78140 -13.65370 -13.56079 -13.37303 -13.27401 -13.11699 -12.84430 -12.59353 -12.50401 -12.11685 -12.01044 -11.95205 -11.87904 -11.68599 -11.00805 -10.80150 -10.72557 -10.66832 -10.49194 -10.35372 -10.09926 -9.93301 -9.51337 -9.12801 -9.08705 -8.85285 -8.62622 -8.48459 -6.97352 -6.06097 -3.06174 -0.15553 0.32296 1.56603 2.16090 2.87591 3.02272 3.54478 3.58528 3.71176 3.76047 3.77937 4.14433 4.28632 4.36572 4.45886 4.61863 4.68457 4.71331 4.76700 4.85130 4.92394 4.96332 5.06041 5.29886 5.35727 5.42802 5.51079 5.55843 5.61312 5.64359 5.66626 5.76116 5.83325 5.88255 5.92925 5.95985 5.97554 5.99138 6.04433 6.11283 6.20809 6.28211 6.28834 6.42544 6.46742 6.64860 6.78362 7.33193 7.53809 7.83801 8.10193 8.79946 9.26648 10.13040 10.27667 11.42390 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.002297 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.978020 B =12187.662316 C =13293.722387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.073 4.073 4 C -0.082 4.082 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.109 4.109 8 C -0.082 4.082 9 C 0.114 3.886 10 N -0.434 5.434 11 C 0.122 3.878 12 C 0.575 3.425 13 O -0.524 6.524 14 N -0.595 5.595 15 C 0.118 3.882 16 C -0.130 4.130 17 C -0.107 4.107 18 H 0.083 0.917 19 C 0.171 3.829 20 N -0.744 5.744 21 C -0.333 4.333 22 H 0.064 0.936 23 C -0.046 4.046 24 N -0.943 5.943 25 Si 1.081 2.919 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C 0.115 3.885 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.074 0.926 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.758 26.392 -4.405 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.099 4.099 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.100 4.100 9 C -0.009 4.009 10 N -0.144 5.144 11 C -0.032 4.032 12 C 0.362 3.638 13 O -0.400 6.400 14 N -0.327 5.327 15 C -0.005 4.005 16 C -0.168 4.168 17 C -0.127 4.127 18 H 0.102 0.898 19 C 0.043 3.957 20 N -0.390 5.390 21 C -0.464 4.464 22 H 0.082 0.918 23 C -0.243 4.243 24 N -0.588 5.588 25 Si 0.912 3.088 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.006 4.006 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.162 0.838 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.534 24.363 -4.204 28.679 hybrid contribution 0.867 2.193 -0.130 2.361 sum 15.401 26.556 -4.335 31.003 Atomic orbital electron populations 1.21095 0.88635 1.03399 1.04303 1.20562 0.98704 0.91954 0.97333 1.21353 0.92398 0.98445 0.97676 1.18977 0.94220 0.94587 1.00607 1.20996 0.94111 0.97093 0.99992 1.20998 0.94648 0.98128 0.98808 1.20922 1.00549 0.92017 0.99371 1.20884 0.90992 0.99526 0.98607 1.18917 0.94273 0.87780 0.99962 1.68124 1.06467 1.29966 1.09893 1.21208 0.89604 0.93726 0.98613 1.17528 0.86275 0.81970 0.78051 1.90773 1.12795 1.85906 1.50566 1.48412 1.08910 1.05770 1.69636 1.22113 0.80060 0.95955 1.02366 1.22753 0.98472 0.93701 1.01914 1.22599 0.93648 0.95613 1.00793 0.89848 1.20524 0.90382 0.89295 0.95507 1.42381 1.28216 1.16292 1.52135 1.20009 1.10294 0.92000 1.24060 0.91763 1.25790 0.94612 1.06080 0.97867 1.70876 1.41407 1.11400 1.35141 0.83235 0.76066 0.74237 0.75307 1.21045 1.22280 1.22297 1.22375 0.96663 0.79205 1.02387 0.90231 0.92200 0.88052 0.83755 0.85106 0.85398 0.85101 0.84399 0.91320 0.90393 0.90004 0.90462 0.95692 0.95924 0.79956 0.93359 0.90748 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.67 36.01 0.31 -0.99 16 2 C -0.08 -0.97 5.89 -104.48 -0.62 -1.59 16 3 C -0.07 -0.68 9.50 -39.26 -0.37 -1.06 16 4 C -0.08 -0.79 5.75 -106.71 -0.61 -1.40 16 5 C -0.10 -0.72 9.77 -39.52 -0.39 -1.11 16 6 C -0.11 -0.64 9.95 -39.89 -0.40 -1.04 16 7 C -0.11 -0.70 9.94 -39.95 -0.40 -1.09 16 8 C -0.08 -0.69 9.99 -39.41 -0.39 -1.09 16 9 C 0.11 1.25 6.61 -84.85 -0.56 0.69 16 10 N -0.43 -5.49 6.80 -7.54 -0.05 -5.54 16 11 C 0.12 1.68 6.71 -82.96 -0.56 1.13 16 12 C 0.57 9.29 7.78 -12.13 -0.09 9.20 16 13 O -0.52 -9.61 13.48 5.36 0.07 -9.53 16 14 N -0.60 -9.24 3.33 -171.48 -0.57 -9.81 16 15 C 0.12 1.49 5.41 -3.06 -0.02 1.48 16 16 C -0.13 -1.62 6.42 -24.89 -0.16 -1.77 16 17 C -0.11 -1.74 3.10 -88.48 -0.27 -2.01 16 18 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.17 3.43 5.71 -4.04 -0.02 3.40 16 20 N -0.74 -19.05 5.45 -59.91 -0.33 -19.37 16 21 C -0.33 -9.57 9.99 -15.06 -0.15 -9.72 16 22 H 0.06 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 24 N -0.94 -29.87 13.70 55.49 0.76 -29.11 16 25 Si 1.08 26.41 29.92 -169.99 -5.09 21.33 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.12 1.98 6.08 -2.54 -0.02 1.97 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 32 H 0.10 1.36 5.81 -51.93 -0.30 1.06 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.83 7.69 -51.93 -0.40 0.43 16 39 H 0.08 0.96 7.24 -51.93 -0.38 0.59 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.37 9.67 6.36 -40.82 -0.26 9.41 16 45 H 0.26 7.99 6.77 -40.82 -0.28 7.71 16 46 H 0.07 1.34 8.00 -51.93 -0.42 0.92 16 47 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -34.77 381.55 -10.98 -45.75 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.71 Total: 7.01 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -4.81 Total: -6.47 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.19 Total: -63.83 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -5.09 Total: 21.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.77 -10.98 -45.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267051114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.203 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds