Wall clock time and date at job start Sat Apr 11 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00512 * 2 1 4 4 H 1.48492 * 109.47206 * 239.99943 * 3 2 1 5 5 H 1.48499 * 109.46774 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46979 * 119.99845 * 3 2 1 7 7 C 1.38815 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00311 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.64787 * 359.97285 * 9 7 2 11 11 C 1.54322 * 107.27326 * 178.97677 * 10 9 7 12 12 C 1.55156 * 102.94160 * 337.80855 * 11 10 9 13 13 H 1.09002 * 111.00534 * 277.39125 * 12 11 10 14 14 C 1.53001 * 111.01046 * 153.57565 * 12 11 10 15 15 C 1.52998 * 109.47628 * 178.17894 * 14 12 11 16 16 N 1.46498 * 109.47272 * 179.97438 * 15 14 12 17 17 C 1.34768 * 119.99865 * 179.97438 * 16 15 14 18 18 O 1.21567 * 120.00553 * 0.02562 * 17 16 15 19 19 C 1.47777 * 119.99842 * 180.02562 * 17 16 15 20 20 C 1.40652 * 119.70286 * 0.02562 * 19 17 16 21 21 C 1.35843 * 120.88189 * 180.02562 * 20 19 17 22 22 C 1.40400 * 119.84347 * 0.02562 * 21 20 19 23 23 C 1.40631 * 121.97909 * 179.97438 * 22 21 20 24 24 C 1.36225 * 118.72974 * 180.02562 * 23 22 21 25 25 N 1.32596 * 121.90224 * 359.97438 * 24 23 22 26 26 C 1.31237 * 122.74090 * 0.02562 * 25 24 23 27 27 C 1.40554 * 119.88174 * 359.97438 * 26 25 24 28 28 C 1.38567 * 119.70050 * 180.02562 * 19 17 16 29 29 C 1.47464 * 125.62720 * 179.97438 * 9 7 2 30 30 H 0.97009 * 119.99707 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.88556 * 59.55560 * 10 9 7 32 32 H 1.09005 * 110.01640 * 298.46351 * 10 9 7 33 33 H 1.08997 * 110.72501 * 219.44729 * 11 10 9 34 34 H 1.09005 * 110.87158 * 96.23797 * 11 10 9 35 35 H 1.08998 * 109.46932 * 58.17384 * 14 12 11 36 36 H 1.09000 * 109.46631 * 298.18163 * 14 12 11 37 37 H 1.09004 * 109.46723 * 59.99974 * 15 14 12 38 38 H 1.09002 * 109.46807 * 300.00376 * 15 14 12 39 39 H 0.96997 * 119.99895 * 0.02562 * 16 15 14 40 40 H 1.08003 * 119.55376 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.07911 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.63836 * 0.05672 * 23 22 21 43 43 H 1.08003 * 119.04815 * 179.72518 * 24 23 22 44 44 H 1.07994 * 120.06202 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.34346 * 359.95419 * 28 19 17 46 46 H 1.09000 * 110.35172 * 85.25062 * 29 9 7 47 47 H 1.08999 * 110.40763 * 322.91304 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 0.0006 11 6 -0.4488 -4.0440 -0.0258 12 6 0.8516 -4.6563 -0.6102 13 1 0.8563 -4.5974 -1.6986 14 6 1.0366 -6.1009 -0.1414 15 6 2.3022 -6.6841 -0.7730 16 7 2.4797 -8.0671 -0.3235 17 6 3.5351 -8.7856 -0.7549 18 8 4.3401 -8.2861 -1.5165 19 6 3.7137 -10.1809 -0.3019 20 6 2.7782 -10.7529 0.5789 21 6 2.9194 -12.0331 1.0109 22 6 4.0117 -12.8006 0.5764 23 6 4.2019 -14.1295 0.9954 24 6 5.2856 -14.8132 0.5328 25 7 6.1600 -14.2617 -0.2975 26 6 6.0471 -13.0279 -0.7303 27 6 4.9637 -12.2357 -0.3129 28 6 4.8014 -10.9139 -0.7489 29 6 1.9338 -3.7314 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5577 -2.0523 -0.8831 32 1 -0.5570 -2.0837 0.9010 33 1 -1.2987 -4.2516 -0.6758 34 1 -0.6337 -4.4201 0.9805 35 1 0.1734 -6.6942 -0.4431 36 1 1.1298 -6.1213 0.9445 37 1 3.1654 -6.0908 -0.4711 38 1 2.2090 -6.6636 -1.8588 39 1 1.8371 -8.4658 0.2839 40 1 1.9364 -10.1664 0.9164 41 1 2.1930 -12.4594 1.6869 42 1 3.5020 -14.5992 1.6706 43 1 5.4391 -15.8326 0.8549 44 1 6.7849 -12.6223 -1.4067 45 1 5.5168 -10.4708 -1.4258 46 1 2.1673 -4.0418 1.0190 47 1 2.8330 -3.7414 -0.6155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267567299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:08 Heat of formation + Delta-G solvation = 36.282496 kcal Electronic energy + Delta-G solvation = -27278.992353 eV Core-core repulsion = 23426.797909 eV Total energy + Delta-G solvation = -3852.194444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36936 -39.90375 -37.89880 -37.35321 -35.37065 -33.47410 -33.13731 -31.93233 -30.73733 -30.16789 -28.97512 -26.82254 -25.28406 -24.45440 -24.31916 -22.82202 -22.25077 -21.27732 -19.99468 -19.62814 -18.53992 -18.23002 -17.23015 -16.82936 -16.23153 -15.83641 -15.76306 -15.49880 -15.03456 -14.66934 -14.57224 -14.43742 -14.16310 -14.06254 -13.80475 -13.69410 -13.54220 -12.56631 -12.50808 -12.37380 -12.23203 -11.96266 -11.82501 -11.77035 -11.55739 -11.11763 -10.86688 -10.74215 -10.70700 -10.33454 -10.15233 -10.01299 -9.96180 -9.83959 -9.75497 -9.65779 -9.59997 -9.20733 -8.59336 -8.56755 -6.79325 -5.68062 -3.01128 -0.26101 0.20985 1.31897 2.13448 2.90676 3.02908 3.42915 3.46912 3.48212 3.60800 3.90284 4.01014 4.14917 4.22710 4.39400 4.50048 4.52975 4.61994 4.69128 4.89141 5.06843 5.08362 5.17073 5.24696 5.27078 5.38874 5.45153 5.49681 5.59960 5.64646 5.71988 5.76229 5.80688 5.86791 6.00297 6.07699 6.10091 6.18952 6.19522 6.31621 6.39159 6.55774 6.60110 6.74272 6.98062 7.26972 7.46263 7.59432 7.65779 7.85689 7.97533 8.29826 9.25938 9.86422 10.52749 11.43672 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.001653 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.149725 B =16939.335723 C =17546.281611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.722 5.722 17 C 0.554 3.446 18 O -0.533 6.533 19 C -0.135 4.135 20 C -0.071 4.071 21 C -0.117 4.117 22 C -0.008 4.008 23 C -0.161 4.161 24 C 0.084 3.916 25 N -0.492 5.492 26 C 0.160 3.840 27 C -0.124 4.124 28 C -0.015 4.015 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.150 0.850 46 H 0.017 0.983 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -30.496 2.226 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.374 5.374 17 C 0.340 3.660 18 O -0.411 6.411 19 C -0.138 4.138 20 C -0.091 4.091 21 C -0.135 4.135 22 C -0.014 4.014 23 C -0.180 4.180 24 C -0.058 4.058 25 N -0.200 5.200 26 C -0.012 4.012 27 C -0.126 4.126 28 C -0.036 4.036 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.168 0.832 46 H 0.035 0.965 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.964 -30.486 1.489 30.923 hybrid contribution -0.741 1.233 0.701 1.600 sum 4.222 -29.253 2.190 29.637 Atomic orbital electron populations 1.69961 1.04870 1.25042 1.57234 1.24799 0.95729 0.97655 1.02383 0.86198 0.78444 0.83222 0.77906 1.21168 1.21613 1.21217 1.19036 0.90429 0.82518 1.43634 0.90531 1.44483 1.01717 0.99939 1.87147 1.21123 0.84365 0.88335 1.00948 1.22900 0.95907 0.99518 0.99331 1.22273 0.97706 0.91857 1.00222 0.90551 1.21752 0.96060 0.96829 1.00833 1.21560 0.99260 0.80071 0.99699 1.45999 1.26951 1.14845 1.49583 1.18178 0.81490 0.85361 0.80929 1.90813 1.43303 1.71646 1.35314 1.20004 0.97683 0.94790 1.01331 1.21055 0.97760 0.95348 0.94903 1.20871 0.97509 0.94134 1.00976 1.18305 0.94210 0.94167 0.94677 1.21948 1.00088 0.93989 1.02015 1.22294 0.90255 1.00176 0.93117 1.67500 1.28691 1.12627 1.11159 1.23368 0.94192 0.88792 0.94845 1.19022 0.97690 0.95632 1.00285 1.21489 0.95566 0.91304 0.95221 1.21620 0.94319 0.86129 0.96592 0.93785 0.93713 0.94113 0.92366 0.92601 0.91625 0.91259 0.90640 0.91141 0.76648 0.85018 0.84428 0.84173 0.82791 0.81464 0.83226 0.96540 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.31 55.49 0.57 -26.84 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.46 10.28 -15.05 -0.15 -6.62 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.66 3.40 -170.04 -0.58 -16.23 16 10 C 0.18 4.30 5.37 -3.07 -0.02 4.28 16 11 C -0.14 -2.47 6.42 -24.90 -0.16 -2.63 16 12 C -0.10 -1.64 3.04 -88.47 -0.27 -1.91 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.12 -1.37 4.84 -26.73 -0.13 -1.50 16 15 C 0.12 1.41 5.55 -4.04 -0.02 1.39 16 16 N -0.72 -7.22 5.50 -61.27 -0.34 -7.55 16 17 C 0.55 6.51 7.76 -12.36 -0.10 6.42 16 18 O -0.53 -8.33 16.30 5.31 0.09 -8.24 16 19 C -0.13 -1.24 5.87 -104.97 -0.62 -1.86 16 20 C -0.07 -0.48 9.44 -39.53 -0.37 -0.85 16 21 C -0.12 -0.72 9.77 -39.63 -0.39 -1.11 16 22 C -0.01 -0.06 5.75 -106.74 -0.61 -0.68 16 23 C -0.16 -0.98 9.87 -39.40 -0.39 -1.37 16 24 C 0.08 0.58 11.07 -17.95 -0.20 0.38 16 25 N -0.49 -4.29 10.30 -13.11 -0.14 -4.43 16 26 C 0.16 1.24 11.05 -16.93 -0.19 1.05 16 27 C -0.12 -1.02 5.74 -106.87 -0.61 -1.64 16 28 C -0.01 -0.13 9.37 -38.75 -0.36 -0.49 16 29 C 0.14 2.85 6.04 -2.51 -0.02 2.83 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 32 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.40 2.74 6.45 -40.82 -0.26 2.48 16 40 H 0.13 0.55 6.34 -52.48 -0.33 0.22 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.15 1.25 7.61 -52.49 -0.40 0.85 16 46 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 47 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -35.13 385.35 -11.07 -46.19 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.76 Total: -1.42 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -4.70 Total: -4.67 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.48 Total: -55.06 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.13 -11.07 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.477 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds