Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00512 * 2 1 4 4 H 1.48492 * 109.47206 * 239.99943 * 3 2 1 5 5 H 1.48499 * 109.46774 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46979 * 119.99845 * 3 2 1 7 7 C 1.38815 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00311 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.64787 * 359.97285 * 9 7 2 11 11 C 1.54322 * 107.27326 * 178.97677 * 10 9 7 12 12 C 1.55156 * 102.94160 * 337.80855 * 11 10 9 13 13 H 1.09002 * 111.00534 * 277.39125 * 12 11 10 14 14 C 1.53001 * 111.01046 * 153.57565 * 12 11 10 15 15 C 1.52998 * 109.47628 * 178.17894 * 14 12 11 16 16 N 1.46498 * 109.47272 * 179.97438 * 15 14 12 17 17 C 1.34768 * 119.99865 * 179.97438 * 16 15 14 18 18 O 1.21567 * 120.00553 * 0.02562 * 17 16 15 19 19 C 1.47777 * 119.99842 * 180.02562 * 17 16 15 20 20 C 1.40652 * 119.70286 * 0.02562 * 19 17 16 21 21 C 1.35843 * 120.88189 * 180.02562 * 20 19 17 22 22 C 1.40400 * 119.84347 * 0.02562 * 21 20 19 23 23 C 1.40631 * 121.97909 * 179.97438 * 22 21 20 24 24 C 1.36225 * 118.72974 * 180.02562 * 23 22 21 25 25 N 1.32596 * 121.90224 * 359.97438 * 24 23 22 26 26 C 1.31237 * 122.74090 * 0.02562 * 25 24 23 27 27 C 1.40554 * 119.88174 * 359.97438 * 26 25 24 28 28 C 1.38567 * 119.70050 * 180.02562 * 19 17 16 29 29 C 1.47464 * 125.62720 * 179.97438 * 9 7 2 30 30 H 0.97009 * 119.99707 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.88556 * 59.55560 * 10 9 7 32 32 H 1.09005 * 110.01640 * 298.46351 * 10 9 7 33 33 H 1.08997 * 110.72501 * 219.44729 * 11 10 9 34 34 H 1.09005 * 110.87158 * 96.23797 * 11 10 9 35 35 H 1.08998 * 109.46932 * 58.17384 * 14 12 11 36 36 H 1.09000 * 109.46631 * 298.18163 * 14 12 11 37 37 H 1.09004 * 109.46723 * 59.99974 * 15 14 12 38 38 H 1.09002 * 109.46807 * 300.00376 * 15 14 12 39 39 H 0.96997 * 119.99895 * 0.02562 * 16 15 14 40 40 H 1.08003 * 119.55376 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.07911 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.63836 * 0.05672 * 23 22 21 43 43 H 1.08003 * 119.04815 * 179.72518 * 24 23 22 44 44 H 1.07994 * 120.06202 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.34346 * 359.95419 * 28 19 17 46 46 H 1.09000 * 110.35172 * 85.25062 * 29 9 7 47 47 H 1.08999 * 110.40763 * 322.91304 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 0.0006 11 6 -0.4488 -4.0440 -0.0258 12 6 0.8516 -4.6563 -0.6102 13 1 0.8563 -4.5974 -1.6986 14 6 1.0366 -6.1009 -0.1414 15 6 2.3022 -6.6841 -0.7730 16 7 2.4797 -8.0671 -0.3235 17 6 3.5351 -8.7856 -0.7549 18 8 4.3401 -8.2861 -1.5165 19 6 3.7137 -10.1809 -0.3019 20 6 2.7782 -10.7529 0.5789 21 6 2.9194 -12.0331 1.0109 22 6 4.0117 -12.8006 0.5764 23 6 4.2019 -14.1295 0.9954 24 6 5.2856 -14.8132 0.5328 25 7 6.1600 -14.2617 -0.2975 26 6 6.0471 -13.0279 -0.7303 27 6 4.9637 -12.2357 -0.3129 28 6 4.8014 -10.9139 -0.7489 29 6 1.9338 -3.7314 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5577 -2.0523 -0.8831 32 1 -0.5570 -2.0837 0.9010 33 1 -1.2987 -4.2516 -0.6758 34 1 -0.6337 -4.4201 0.9805 35 1 0.1734 -6.6942 -0.4431 36 1 1.1298 -6.1213 0.9445 37 1 3.1654 -6.0908 -0.4711 38 1 2.2090 -6.6636 -1.8588 39 1 1.8371 -8.4658 0.2839 40 1 1.9364 -10.1664 0.9164 41 1 2.1930 -12.4594 1.6869 42 1 3.5020 -14.5992 1.6706 43 1 5.4391 -15.8326 0.8549 44 1 6.7849 -12.6223 -1.4067 45 1 5.5168 -10.4708 -1.4258 46 1 2.1673 -4.0418 1.0190 47 1 2.8330 -3.7414 -0.6155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267567299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 14.032589 kcal Electronic energy + Delta-G solvation = -27279.957181 eV Core-core repulsion = 23426.797909 eV Total energy + Delta-G solvation = -3853.159273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.93540 -40.74692 -39.40276 -38.00792 -36.53538 -34.79326 -34.00493 -32.92222 -32.00047 -30.84841 -30.53802 -28.25489 -26.73850 -25.51601 -24.95098 -23.68580 -23.12713 -22.14300 -21.80412 -20.93844 -19.32535 -18.86979 -18.73371 -17.80856 -17.03213 -16.83648 -16.70884 -16.57984 -16.22169 -15.99412 -15.57710 -15.33393 -15.08486 -14.95301 -14.77970 -14.50746 -14.24629 -14.11494 -13.84232 -13.67315 -13.31791 -13.12940 -13.00715 -12.85122 -12.77046 -12.64407 -12.31727 -12.23682 -12.04623 -11.79229 -11.58549 -11.38098 -11.31237 -11.24245 -11.09513 -10.69638 -10.51135 -10.29879 -10.06710 -9.11230 -8.87995 -7.85121 -5.20085 -0.82130 -0.32958 0.76697 1.43984 1.47430 1.49964 1.53755 2.06540 2.31803 2.49380 3.05312 3.32419 3.44627 3.50768 3.60776 3.66011 3.69212 3.80929 3.87137 3.98834 4.01323 4.06129 4.17072 4.28093 4.36781 4.39152 4.62613 4.65272 4.68065 4.70811 4.77073 4.79228 4.88835 4.93104 4.94316 5.01995 5.13838 5.17903 5.18854 5.27149 5.31190 5.38672 5.44956 5.54460 5.61422 5.71571 5.72254 5.80656 6.21541 6.49040 6.94919 7.11660 7.14961 7.79963 8.43898 9.24856 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.001653 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.149725 B =16939.335723 C =17546.281611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.099 4.099 15 C 0.122 3.878 16 N -0.706 5.706 17 C 0.551 3.449 18 O -0.582 6.582 19 C -0.146 4.146 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.024 4.024 23 C -0.153 4.153 24 C 0.069 3.931 25 N -0.516 5.516 26 C 0.147 3.853 27 C -0.136 4.136 28 C -0.026 4.026 29 C 0.133 3.867 30 H 0.246 0.754 31 H 0.006 0.994 32 H 0.004 0.996 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.417 0.583 40 H 0.161 0.839 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.141 0.859 46 H 0.025 0.975 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -33.232 3.673 33.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.137 4.137 15 C -0.002 4.002 16 N -0.359 5.359 17 C 0.340 3.660 18 O -0.464 6.464 19 C -0.149 4.149 20 C -0.093 4.093 21 C -0.125 4.125 22 C -0.029 4.029 23 C -0.172 4.172 24 C -0.073 4.073 25 N -0.224 5.224 26 C -0.024 4.024 27 C -0.138 4.138 28 C -0.047 4.047 29 C 0.008 3.992 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.178 0.822 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.194 0.806 44 H 0.197 0.803 45 H 0.159 0.841 46 H 0.043 0.957 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.919 -33.271 2.963 33.632 hybrid contribution -0.373 2.008 0.271 2.060 sum 3.546 -31.263 3.234 31.629 Atomic orbital electron populations 1.70191 1.06210 1.25259 1.58303 1.25655 0.96678 1.01010 1.02711 0.85162 0.77179 0.78878 0.78190 1.20437 1.21790 1.20326 1.19434 0.90926 0.84102 1.43036 0.90407 1.44840 1.02700 1.01228 1.86984 1.20943 0.83541 0.92641 0.97365 1.22758 0.97359 0.94418 1.01443 1.22154 0.94874 0.93816 0.99711 0.91020 1.21597 0.96966 0.93687 1.01455 1.21341 0.98640 0.80946 0.99254 1.45779 1.26885 1.13851 1.49362 1.18610 0.81006 0.86302 0.80123 1.90787 1.45089 1.72851 1.37638 1.19920 0.98862 0.93422 1.02738 1.21301 0.97851 0.95963 0.94142 1.21250 0.97228 0.93572 1.00457 1.18683 0.94527 0.95137 0.94557 1.22290 1.00082 0.93231 1.01597 1.22768 0.90341 1.01344 0.92869 1.67516 1.29815 1.13012 1.12096 1.23614 0.94679 0.88811 0.95296 1.19102 0.98393 0.95354 1.00978 1.21498 0.95769 0.91860 0.95560 1.21849 0.95401 0.84754 0.97215 0.94436 0.97558 0.97809 0.89951 0.90382 0.88228 0.89867 0.92965 0.92080 0.74434 0.82170 0.81013 0.80912 0.80553 0.80271 0.84091 0.95688 0.95035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 10.31 21.65 0.22 -58.17 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 3 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.28 10.28 84.03 0.86 -13.41 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.22 3.40 -691.89 -2.35 -35.57 16 10 C 0.18 8.94 5.37 86.73 0.47 9.41 16 11 C -0.12 -4.09 6.42 31.78 0.20 -3.89 16 12 C -0.09 -2.62 3.04 -9.40 -0.03 -2.65 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.10 -1.97 4.84 30.59 0.15 -1.82 16 15 C 0.12 2.73 5.55 86.38 0.48 3.21 16 16 N -0.71 -12.51 5.50 -466.04 -2.56 -15.07 16 17 C 0.55 12.62 7.76 86.77 0.67 13.29 16 18 O -0.58 -18.75 16.30 -3.93 -0.06 -18.81 16 19 C -0.15 -2.53 5.87 -20.09 -0.12 -2.65 16 20 C -0.07 -0.75 9.44 22.30 0.21 -0.54 16 21 C -0.11 -0.92 9.77 22.24 0.22 -0.70 16 22 C -0.02 -0.30 5.75 -21.24 -0.12 -0.42 16 23 C -0.15 -1.42 9.87 22.38 0.22 -1.20 16 24 C 0.07 0.82 11.07 84.11 0.93 1.75 16 25 N -0.52 -8.70 10.30 -195.40 -2.01 -10.72 16 26 C 0.15 2.29 11.05 85.35 0.94 3.24 16 27 C -0.14 -2.18 5.74 -21.32 -0.12 -2.30 16 28 C -0.03 -0.46 9.37 22.81 0.21 -0.25 16 29 C 0.13 5.37 6.04 86.85 0.52 5.89 16 30 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 31 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 32 H 0.00 0.21 7.50 -2.38 -0.02 0.19 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.31 8.04 -2.38 -0.02 2.29 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.51 8.03 -2.39 -0.02 1.49 16 37 H 0.05 1.43 7.60 -2.39 -0.02 1.41 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.42 4.10 6.45 -92.71 -0.60 3.50 16 40 H 0.16 0.60 6.34 -2.91 -0.02 0.58 16 41 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.17 0.38 8.06 -2.91 -0.02 0.35 16 43 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.14 2.61 7.61 -2.91 -0.02 2.59 16 46 H 0.03 0.99 7.96 -2.39 -0.02 0.97 16 47 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -81.25 385.35 1.82 -79.43 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.39 Total: 6.48 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.17 Total: 3.45 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -6.70 Total: -119.53 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -81.25 1.82 -79.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.461 kcal (2) G-P(sol) polarization free energy of solvation -81.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds