Wall clock time and date at job start Sat Apr 11 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48499 * 109.47304 * 239.99983 * 3 2 1 5 5 H 1.48506 * 109.46600 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47518 * 119.99692 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99579 * 197.36573 * 7 2 1 9 9 N 1.36937 * 119.99966 * 17.36588 * 7 2 1 10 10 C 1.46928 * 120.62753 * 207.68297 * 9 7 2 11 11 C 1.53193 * 108.77494 * 233.58813 * 10 9 7 12 12 C 1.53034 * 109.34154 * 305.35353 * 11 10 9 13 13 C 1.53101 * 109.50619 * 61.34661 * 12 11 10 14 14 H 1.09004 * 109.48735 * 58.61216 * 13 12 11 15 15 N 1.46500 * 109.51639 * 178.68484 * 13 12 11 16 16 C 1.34774 * 120.00008 * 204.86589 * 15 13 12 17 17 O 1.21284 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99985 * 179.97438 * 16 15 13 19 19 C 1.53007 * 109.47402 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47605 * 180.02562 * 19 18 16 21 21 N 1.46492 * 109.47310 * 179.97438 * 20 19 18 22 22 C 1.36373 * 125.96466 * 269.68867 * 21 20 19 23 23 O 1.35628 * 125.98705 * 0.03597 * 22 21 20 24 24 N 1.30906 * 108.02400 * 179.88628 * 22 21 20 25 25 N 1.40119 * 107.93955 * 0.37440 * 24 22 21 26 26 C 1.30903 * 107.93909 * 359.76287 * 25 24 22 27 27 O 1.35629 * 125.98891 * 180.02562 * 26 25 24 28 28 C 1.46923 * 120.63232 * 27.66631 * 9 7 2 29 29 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58355 * 113.80331 * 10 9 7 31 31 H 1.08997 * 109.58949 * 353.37680 * 10 9 7 32 32 H 1.09005 * 109.49386 * 65.32087 * 11 10 9 33 33 H 1.09004 * 109.49947 * 185.37989 * 11 10 9 34 34 H 1.09002 * 109.46218 * 181.40187 * 12 11 10 35 35 H 1.09005 * 109.45841 * 301.35971 * 12 11 10 36 36 H 0.96993 * 119.99846 * 24.87545 * 15 13 12 37 37 H 1.09001 * 109.47919 * 300.00169 * 18 16 15 38 38 H 1.09004 * 109.47181 * 60.00651 * 18 16 15 39 39 H 1.09000 * 109.46630 * 299.99943 * 19 18 16 40 40 H 1.09004 * 109.46950 * 59.99861 * 19 18 16 41 41 H 1.09000 * 109.46929 * 300.00091 * 20 19 18 42 42 H 1.08999 * 109.47112 * 59.99351 * 20 19 18 43 43 H 0.96709 * 113.99578 * 89.99772 * 23 22 21 44 44 H 0.96706 * 113.99517 * 269.97147 * 27 26 25 45 45 H 1.08994 * 109.58324 * 246.19664 * 28 9 7 46 46 H 1.08997 * 109.58439 * 6.62159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2235 0.2797 9 7 1.3721 -2.3612 -0.3529 10 6 1.8190 -3.6547 0.1819 11 6 2.0738 -4.6104 -0.9880 12 6 0.8184 -4.6911 -1.8593 13 6 0.5004 -3.3054 -2.4273 14 1 1.3491 -2.9479 -3.0105 15 7 -0.6832 -3.3885 -3.2866 16 6 -0.8703 -2.4811 -4.2655 17 8 -0.0586 -1.5960 -4.4352 18 6 -2.0875 -2.5669 -5.1498 19 6 -2.0578 -1.4275 -6.1705 20 6 -3.2939 -1.5142 -7.0680 21 7 -3.2656 -0.4229 -8.0449 22 6 -3.8112 0.8157 -7.8779 23 8 -4.4741 1.2530 -6.7785 24 7 -3.5801 1.5097 -8.9636 25 7 -2.8741 0.6924 -9.8562 26 6 -2.6943 -0.4703 -9.2823 27 8 -2.0520 -1.5353 -9.8233 28 6 0.2276 -2.3349 -1.2738 29 1 -0.4849 0.8401 -0.0004 30 1 1.0466 -4.0686 0.8301 31 1 2.7397 -3.5174 0.7488 32 1 2.9077 -4.2406 -1.5847 33 1 2.3136 -5.6015 -0.6026 34 1 0.9890 -5.3897 -2.6784 35 1 -0.0208 -5.0373 -1.2559 36 1 -1.3322 -4.0964 -3.1510 37 1 -2.0898 -3.5231 -5.6732 38 1 -2.9867 -2.4847 -4.5392 39 1 -2.0554 -0.4712 -5.6475 40 1 -1.1585 -1.5100 -6.7811 41 1 -3.2967 -2.4706 -7.5910 42 1 -4.1928 -1.4315 -6.4572 43 1 -3.9055 1.6685 -6.1157 44 1 -2.6286 -2.1309 -10.3214 45 1 -0.6745 -2.6411 -0.7442 46 1 0.0984 -1.3266 -1.6672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267616166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:15 Heat of formation + Delta-G solvation = -9.500856 kcal Electronic energy + Delta-G solvation = -29665.763674 eV Core-core repulsion = 25400.734651 eV Total energy + Delta-G solvation = -4265.029023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53716 -39.64937 -38.47281 -37.49641 -37.37250 -35.89737 -34.17965 -32.79747 -32.53494 -30.10589 -29.85376 -29.19062 -27.13537 -25.31580 -23.36224 -23.05009 -22.26233 -22.07874 -21.54354 -20.05018 -19.37900 -19.11259 -18.92288 -17.24180 -16.96071 -16.80757 -16.34822 -15.92009 -15.71113 -15.57033 -14.84582 -14.41225 -14.17377 -14.02090 -13.70739 -13.50501 -13.29089 -13.13317 -12.90280 -12.69560 -12.57552 -12.37489 -12.28960 -12.10402 -11.91870 -11.52851 -11.24348 -11.05824 -10.81165 -10.78799 -10.73343 -10.54206 -10.30660 -10.30091 -10.06279 -9.98186 -9.71934 -9.59101 -9.45031 -8.61670 -8.46755 -6.70458 -5.80190 -3.22965 1.23316 1.44086 1.95366 2.91818 2.94040 3.31508 3.40442 3.45806 3.48914 3.57299 4.06870 4.41729 4.51550 4.57679 4.79470 4.87720 4.93468 4.99907 5.10620 5.28228 5.31850 5.34466 5.37122 5.49231 5.57805 5.64932 5.71439 5.82266 5.90764 6.02390 6.08245 6.27671 6.36663 6.43639 6.63840 6.71060 6.72172 6.86941 6.90897 7.01250 7.23706 7.60827 7.66129 7.77865 7.84988 8.43391 8.56012 9.18837 9.82780 10.37304 11.27877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002729 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.057719 B =10256.929285 C =11777.536831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.081 0.919 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.532 6.532 18 C -0.136 4.136 19 C -0.120 4.120 20 C 0.101 3.899 21 N -0.509 5.509 22 C 0.410 3.590 23 O -0.438 6.438 24 N -0.298 5.298 25 N -0.299 5.299 26 C 0.406 3.594 27 O -0.433 6.433 28 C 0.168 3.832 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.392 0.608 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.417 0.583 44 H 0.410 0.590 45 H 0.016 0.984 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 -11.112 -13.494 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.010 3.990 14 H 0.099 0.901 15 N -0.371 5.371 16 C 0.292 3.708 17 O -0.408 6.408 18 C -0.176 4.176 19 C -0.159 4.159 20 C -0.022 4.022 21 N -0.229 5.229 22 C 0.100 3.900 23 O -0.238 6.238 24 N -0.142 5.142 25 N -0.143 5.143 26 C 0.096 3.904 27 O -0.233 6.233 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.225 0.775 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.276 0.724 44 H 0.268 0.732 45 H 0.034 0.966 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.503 -9.117 -14.635 19.688 hybrid contribution 0.019 -0.840 1.279 1.530 sum -9.484 -9.957 -13.356 19.170 Atomic orbital electron populations 1.70012 1.05344 1.25611 1.53448 1.25016 0.95276 0.98482 1.00431 0.86372 0.79033 0.83240 0.78158 1.20875 1.21592 1.20838 1.19115 0.92752 0.84839 1.41948 0.91630 1.43964 1.36028 1.01641 1.49522 1.20960 0.97754 0.86848 0.92867 1.22007 0.96986 0.99361 0.98787 1.21680 0.98924 0.96016 0.98730 1.21998 0.87094 0.96875 0.93003 0.90108 1.46082 1.26345 1.30991 1.33702 1.20368 0.87388 0.81993 0.81018 1.90773 1.45656 1.33913 1.70476 1.21533 0.98289 1.00181 0.97642 1.21673 0.97322 1.00012 0.96874 1.22041 1.01071 0.88584 0.90544 1.47147 1.45006 1.14547 1.16199 1.21356 0.94312 0.82772 0.91596 1.84906 1.33498 1.77763 1.27672 1.78379 1.15802 1.19879 1.00187 1.78353 1.16331 0.99685 1.19949 1.21306 0.94526 0.91067 0.83493 1.85004 1.33861 1.34497 1.69936 1.21074 0.88699 0.98898 0.87232 0.93660 0.96394 0.92592 0.92132 0.92608 0.93153 0.92281 0.77500 0.88858 0.88549 0.90352 0.89961 0.88460 0.87931 0.72379 0.73230 0.96600 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 2 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 3 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -7.14 9.59 -15.06 -0.14 -7.29 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 10 C 0.14 2.88 6.52 -3.71 -0.02 2.85 16 11 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C -0.12 -1.75 5.36 -26.66 -0.14 -1.90 16 13 C 0.12 2.13 2.60 -67.78 -0.18 1.96 16 14 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 15 N -0.72 -10.37 5.08 -53.66 -0.27 -10.64 16 16 C 0.51 7.60 7.79 -10.99 -0.09 7.52 16 17 O -0.53 -10.93 15.65 5.55 0.09 -10.85 16 18 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 19 C -0.12 -1.13 4.83 -26.73 -0.13 -1.25 16 20 C 0.10 0.64 6.01 -4.05 -0.02 0.62 16 21 N -0.51 -4.79 2.76 -120.06 -0.33 -5.12 16 22 C 0.41 4.55 9.15 -88.81 -0.81 3.73 16 23 O -0.44 -3.78 13.57 -18.58 -0.25 -4.03 16 24 N -0.30 -4.19 12.72 29.65 0.38 -3.81 16 25 N -0.30 -4.12 12.72 29.66 0.38 -3.74 16 26 C 0.41 4.30 9.15 -88.81 -0.81 3.49 16 27 O -0.43 -3.24 13.58 -18.59 -0.25 -3.49 16 28 C 0.17 3.95 4.89 -3.71 -0.02 3.94 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.42 1.96 9.06 45.56 0.41 2.37 16 44 H 0.41 0.62 9.06 45.56 0.41 1.03 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.62 6.04 -51.93 -0.31 2.31 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -39.08 385.84 -7.42 -46.49 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.26 Total: 2.84 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -2.78 Total: 10.13 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.26 Total: -64.21 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.42 Total: -18.37 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.08 -7.42 -46.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267616166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.993 kcal (2) G-P(sol) polarization free energy of solvation -39.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds