Wall clock time and date at job start Sat Apr 11 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48499 * 109.47304 * 239.99983 * 3 2 1 5 5 H 1.48506 * 109.46600 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47518 * 119.99692 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99579 * 197.36573 * 7 2 1 9 9 N 1.36937 * 119.99966 * 17.36588 * 7 2 1 10 10 C 1.46928 * 120.62753 * 207.68297 * 9 7 2 11 11 C 1.53193 * 108.77494 * 233.58813 * 10 9 7 12 12 C 1.53034 * 109.34154 * 305.35353 * 11 10 9 13 13 C 1.53101 * 109.50619 * 61.34661 * 12 11 10 14 14 H 1.09004 * 109.48735 * 58.61216 * 13 12 11 15 15 N 1.46500 * 109.51639 * 178.68484 * 13 12 11 16 16 C 1.34774 * 120.00008 * 204.86589 * 15 13 12 17 17 O 1.21284 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99985 * 179.97438 * 16 15 13 19 19 C 1.53007 * 109.47402 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47605 * 180.02562 * 19 18 16 21 21 N 1.46492 * 109.47310 * 179.97438 * 20 19 18 22 22 C 1.36373 * 125.96466 * 269.68867 * 21 20 19 23 23 O 1.35628 * 125.98705 * 0.03597 * 22 21 20 24 24 N 1.30906 * 108.02400 * 179.88628 * 22 21 20 25 25 N 1.40119 * 107.93955 * 0.37440 * 24 22 21 26 26 C 1.30903 * 107.93909 * 359.76287 * 25 24 22 27 27 O 1.35629 * 125.98891 * 180.02562 * 26 25 24 28 28 C 1.46923 * 120.63232 * 27.66631 * 9 7 2 29 29 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58355 * 113.80331 * 10 9 7 31 31 H 1.08997 * 109.58949 * 353.37680 * 10 9 7 32 32 H 1.09005 * 109.49386 * 65.32087 * 11 10 9 33 33 H 1.09004 * 109.49947 * 185.37989 * 11 10 9 34 34 H 1.09002 * 109.46218 * 181.40187 * 12 11 10 35 35 H 1.09005 * 109.45841 * 301.35971 * 12 11 10 36 36 H 0.96993 * 119.99846 * 24.87545 * 15 13 12 37 37 H 1.09001 * 109.47919 * 300.00169 * 18 16 15 38 38 H 1.09004 * 109.47181 * 60.00651 * 18 16 15 39 39 H 1.09000 * 109.46630 * 299.99943 * 19 18 16 40 40 H 1.09004 * 109.46950 * 59.99861 * 19 18 16 41 41 H 1.09000 * 109.46929 * 300.00091 * 20 19 18 42 42 H 1.08999 * 109.47112 * 59.99351 * 20 19 18 43 43 H 0.96709 * 113.99578 * 89.99772 * 23 22 21 44 44 H 0.96706 * 113.99517 * 269.97147 * 27 26 25 45 45 H 1.08994 * 109.58324 * 246.19664 * 28 9 7 46 46 H 1.08997 * 109.58439 * 6.62159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2235 0.2797 9 7 1.3721 -2.3612 -0.3529 10 6 1.8190 -3.6547 0.1819 11 6 2.0738 -4.6104 -0.9880 12 6 0.8184 -4.6911 -1.8593 13 6 0.5004 -3.3054 -2.4273 14 1 1.3491 -2.9479 -3.0105 15 7 -0.6832 -3.3885 -3.2866 16 6 -0.8703 -2.4811 -4.2655 17 8 -0.0586 -1.5960 -4.4352 18 6 -2.0875 -2.5669 -5.1498 19 6 -2.0578 -1.4275 -6.1705 20 6 -3.2939 -1.5142 -7.0680 21 7 -3.2656 -0.4229 -8.0449 22 6 -3.8112 0.8157 -7.8779 23 8 -4.4741 1.2530 -6.7785 24 7 -3.5801 1.5097 -8.9636 25 7 -2.8741 0.6924 -9.8562 26 6 -2.6943 -0.4703 -9.2823 27 8 -2.0520 -1.5353 -9.8233 28 6 0.2276 -2.3349 -1.2738 29 1 -0.4849 0.8401 -0.0004 30 1 1.0466 -4.0686 0.8301 31 1 2.7397 -3.5174 0.7488 32 1 2.9077 -4.2406 -1.5847 33 1 2.3136 -5.6015 -0.6026 34 1 0.9890 -5.3897 -2.6784 35 1 -0.0208 -5.0373 -1.2559 36 1 -1.3322 -4.0964 -3.1510 37 1 -2.0898 -3.5231 -5.6732 38 1 -2.9867 -2.4847 -4.5392 39 1 -2.0554 -0.4712 -5.6475 40 1 -1.1585 -1.5100 -6.7811 41 1 -3.2967 -2.4706 -7.5910 42 1 -4.1928 -1.4315 -6.4572 43 1 -3.9055 1.6685 -6.1157 44 1 -2.6286 -2.1309 -10.3214 45 1 -0.6745 -2.6411 -0.7442 46 1 0.0984 -1.3266 -1.6672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267616166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:13 Heat of formation + Delta-G solvation = -46.654160 kcal Electronic energy + Delta-G solvation = -29667.374762 eV Core-core repulsion = 25400.734651 eV Total energy + Delta-G solvation = -4266.640111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.31873 -40.92847 -39.13738 -39.01147 -38.05365 -36.69218 -35.77149 -34.44389 -33.45341 -31.92133 -30.69598 -30.62829 -28.00601 -27.24776 -24.39042 -23.91616 -23.84476 -23.11320 -22.56980 -21.35041 -20.78921 -19.81453 -19.66903 -18.77368 -18.18392 -17.71341 -17.23574 -17.17943 -16.82122 -16.53306 -16.37687 -15.79590 -15.43501 -15.23190 -15.04162 -14.80585 -14.62921 -14.18071 -14.03215 -13.96840 -13.70368 -13.41714 -13.34084 -13.13180 -12.95586 -12.91536 -12.68766 -12.49555 -12.35925 -12.26965 -12.09025 -11.96083 -11.70566 -11.60578 -11.52601 -11.27019 -11.10188 -10.75423 -10.57747 -10.56994 -10.03987 -8.70780 -7.92361 -5.37119 0.48959 0.74228 1.13348 1.38071 1.43563 1.47874 1.76058 2.20517 2.27213 2.46942 2.89818 3.23706 3.50249 3.60595 3.79623 3.87836 3.97075 4.04706 4.14518 4.15358 4.24167 4.31772 4.37955 4.45644 4.48551 4.62211 4.68545 4.70850 4.81597 4.92195 5.02694 5.08048 5.15495 5.19685 5.23810 5.32124 5.34400 5.49714 5.53074 5.59972 5.79151 6.20889 6.34209 6.45318 6.71455 6.78873 7.10138 7.44705 7.83488 8.31407 9.12022 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002729 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.057719 B =10256.929285 C =11777.536831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.047 4.047 3 Si 0.958 3.042 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.065 0.935 9 N -0.612 5.612 10 C 0.135 3.865 11 C -0.123 4.123 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.044 0.956 15 N -0.709 5.709 16 C 0.496 3.504 17 O -0.598 6.598 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.105 3.895 21 N -0.505 5.505 22 C 0.415 3.585 23 O -0.436 6.436 24 N -0.344 5.344 25 N -0.346 5.346 26 C 0.420 3.580 27 O -0.433 6.433 28 C 0.180 3.820 29 H 0.248 0.752 30 H 0.023 0.977 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.416 0.584 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.432 0.568 44 H 0.436 0.564 45 H 0.001 0.999 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -14.659 -13.858 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.243 4.243 3 Si 0.786 3.214 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.010 3.990 11 C -0.163 4.163 12 C -0.143 4.143 13 C 0.023 3.977 14 H 0.062 0.938 15 N -0.361 5.361 16 C 0.284 3.716 17 O -0.479 6.479 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.016 4.016 21 N -0.224 5.224 22 C 0.103 3.897 23 O -0.240 6.240 24 N -0.188 5.188 25 N -0.190 5.190 26 C 0.109 3.891 27 O -0.237 6.237 28 C 0.053 3.947 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.295 0.705 44 H 0.299 0.701 45 H 0.019 0.981 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.576 -12.755 -14.987 22.342 hybrid contribution 0.394 0.179 1.457 1.520 sum -10.182 -12.576 -13.530 21.093 Atomic orbital electron populations 1.70149 1.06469 1.25636 1.55055 1.25714 0.96069 1.01302 1.01183 0.85482 0.77882 0.79807 0.78204 1.21495 1.21768 1.19280 1.19449 0.93004 0.86382 1.40909 0.91728 1.44265 1.36141 1.02601 1.50552 1.21181 0.97493 0.85653 0.94682 1.21910 0.97208 1.00052 0.97110 1.21639 0.98906 0.94025 0.99773 1.21444 0.87459 0.97726 0.91079 0.93815 1.45901 1.25709 1.31697 1.32783 1.21612 0.88398 0.80473 0.81106 1.90754 1.48430 1.36477 1.72229 1.21556 0.95639 1.01958 0.96751 1.21567 0.97835 0.99065 0.96989 1.22260 1.00091 0.89151 0.90123 1.47213 1.44304 1.14653 1.16263 1.21396 0.93538 0.83184 0.91546 1.84878 1.33827 1.77902 1.27364 1.78242 1.17570 1.21424 1.01605 1.78222 1.18276 1.01217 1.21320 1.21337 0.93044 0.91111 0.83632 1.84981 1.34532 1.33983 1.70208 1.20796 0.87936 0.97558 0.88427 0.94328 0.95874 0.92940 0.93387 0.88482 0.89512 0.90482 0.74641 0.84228 0.85473 0.93346 0.92689 0.84650 0.85636 0.70535 0.70061 0.98053 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 11.19 21.65 0.24 -56.20 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 3 Si 0.96 47.39 29.59 68.60 2.03 49.42 16 4 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.27 -15.29 9.59 84.03 0.81 -14.48 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -31.16 2.99 -699.10 -2.09 -33.25 16 10 C 0.13 5.35 6.52 86.36 0.56 5.91 16 11 C -0.12 -3.70 6.08 30.67 0.19 -3.51 16 12 C -0.11 -2.85 5.36 30.64 0.16 -2.68 16 13 C 0.13 4.73 2.60 45.09 0.12 4.84 16 14 H 0.04 1.93 7.58 -2.38 -0.02 1.92 16 15 N -0.71 -19.12 5.08 -442.06 -2.25 -21.37 16 16 C 0.50 14.45 7.79 87.66 0.68 15.13 16 17 O -0.60 -25.68 15.65 -3.04 -0.05 -25.73 16 18 C -0.12 -1.66 5.70 29.85 0.17 -1.49 16 19 C -0.12 -1.98 4.83 30.60 0.15 -1.83 16 20 C 0.11 0.99 6.01 86.38 0.52 1.50 16 21 N -0.50 -8.72 2.76 -755.19 -2.08 -10.80 16 22 C 0.41 9.06 9.15 179.72 1.65 10.70 16 23 O -0.44 -7.22 13.57 -89.41 -1.21 -8.43 16 24 N -0.34 -9.93 12.72 -173.66 -2.21 -12.14 16 25 N -0.35 -9.70 12.72 -173.66 -2.21 -11.91 16 26 C 0.42 8.47 9.15 179.71 1.65 10.12 16 27 O -0.43 -5.56 13.58 -89.42 -1.21 -6.78 16 28 C 0.18 8.70 4.89 86.36 0.42 9.12 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.42 7.16 8.60 -92.71 -0.80 6.36 16 37 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 41 H 0.14 0.31 8.14 -2.39 -0.02 0.30 16 42 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.43 3.95 9.06 -74.05 -0.67 3.28 16 44 H 0.44 0.02 9.06 -74.05 -0.67 -0.65 16 45 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.04 2.48 6.04 -2.39 -0.01 2.47 16 Total: -1.00 -94.27 385.84 -4.66 -98.92 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -1.10 Total: 7.25 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 7.49 Total: 31.02 kcal Atomic # 7 Polarization: -135.07 SS G_CDS: -10.60 Total: -145.67 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -2.48 Total: -40.94 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -94.27 -4.66 -98.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267616166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.270 kcal (2) G-P(sol) polarization free energy of solvation -94.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds