Wall clock time and date at job start Sat Apr 11 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48493 * 109.46941 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46939 * 299.99932 * 3 2 1 6 6 H 1.48495 * 109.46973 * 59.99605 * 3 2 1 7 7 C 1.38804 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00415 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.38240 * 119.99989 * 90.00060 * 11 10 9 13 13 C 1.38227 * 120.00179 * 179.97438 * 12 11 10 14 14 C 1.38240 * 120.00236 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00049 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46996 * 90.00055 * 15 14 13 17 17 C 1.34782 * 119.99864 * 180.02562 * 16 15 14 18 18 O 1.21626 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.47256 * 119.99791 * 180.02562 * 17 16 15 20 20 C 1.36771 * 126.94707 * 359.96777 * 19 17 16 21 21 N 1.34653 * 108.40101 * 180.02562 * 20 19 17 22 22 H 0.97001 * 124.85457 * 180.02562 * 21 20 19 23 23 C 1.36455 * 110.29669 * 0.02562 * 21 20 19 24 24 C 1.34487 * 108.85650 * 0.26539 * 23 21 20 25 25 C 1.50693 * 126.83263 * 179.73365 * 24 23 21 26 26 C 1.53003 * 117.50217 * 8.76959 * 25 24 23 27 27 C 1.53001 * 117.50048 * 300.10973 * 25 24 23 28 28 C 1.38235 * 119.99447 * 0.25541 * 14 13 12 29 29 C 1.38235 * 120.00375 * 359.48700 * 28 14 13 30 30 H 0.97003 * 119.99785 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99373 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46967 * 60.00084 * 10 9 7 33 33 H 1.09000 * 109.47167 * 299.99575 * 10 9 7 34 34 H 1.08005 * 119.99595 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.99649 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47104 * 330.00133 * 15 14 13 37 37 H 1.09000 * 109.47036 * 209.99612 * 15 14 13 38 38 H 0.96996 * 119.99894 * 359.97438 * 16 15 14 39 39 H 1.08005 * 125.79772 * 0.02770 * 20 19 17 40 40 H 1.08002 * 125.56819 * 179.97438 * 23 21 20 41 41 H 1.08998 * 115.55105 * 154.43936 * 25 24 23 42 42 H 1.09005 * 117.49531 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.49962 * 145.02134 * 26 25 24 44 44 H 1.08998 * 117.50185 * 214.98276 * 27 25 24 45 45 H 1.09002 * 117.49860 * 0.02562 * 27 25 24 46 46 H 1.07999 * 119.99656 * 179.73245 * 28 14 13 47 47 H 1.07995 * 120.00067 * 180.25483 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0786 -4.8022 0.0021 12 6 0.6299 -5.3283 -1.1950 13 6 -0.2680 -6.3793 -1.1946 14 6 -0.7177 -6.9039 0.0027 15 6 -1.6970 -8.0492 0.0030 16 7 -0.9645 -9.3180 0.0041 17 6 -1.6384 -10.4852 0.0040 18 8 -2.8547 -10.4852 0.0035 19 6 -0.9022 -11.7605 0.0057 20 6 0.4555 -11.9259 0.0069 21 7 0.7229 -13.2457 0.0077 22 1 1.6131 -13.6309 0.0089 23 6 -0.4375 -13.9637 0.0066 24 6 -1.4768 -13.1102 -0.0009 25 6 -2.9403 -13.4690 -0.0104 26 6 -3.3086 -14.9398 0.1952 27 6 -3.4566 -14.2993 -1.1872 28 6 -0.2734 -6.3739 1.1996 29 6 0.6286 -5.3264 1.1994 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6839 -3.7141 0.8922 33 1 2.6853 -3.7150 -0.8878 34 1 0.9810 -4.9182 -2.1304 35 1 -0.6181 -6.7906 -2.1299 36 1 -2.3232 -7.9920 -0.8873 37 1 -2.3240 -7.9909 0.8927 38 1 0.0055 -9.3180 0.0042 39 1 1.1886 -11.1328 0.0071 40 1 -0.5094 -15.0413 0.0065 41 1 -3.6110 -12.7190 0.4090 42 1 -2.4921 -15.6478 0.3377 43 1 -4.2216 -15.1573 0.7494 44 1 -4.4670 -14.0958 -1.5419 45 1 -2.7375 -14.5864 -1.9544 46 1 -0.6281 -6.7809 2.1350 47 1 0.9788 -4.9151 2.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267939663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:22 Heat of formation + Delta-G solvation = 67.412714 kcal Electronic energy + Delta-G solvation = -26986.927812 eV Core-core repulsion = 23136.083275 eV Total energy + Delta-G solvation = -3850.844537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59627 -39.61865 -38.74506 -37.25252 -35.42462 -34.25198 -32.19299 -31.23922 -30.69907 -30.19896 -29.27346 -26.91791 -24.54618 -23.50070 -23.00454 -22.57709 -22.46565 -22.20199 -20.47084 -19.94499 -19.31471 -18.75039 -17.29149 -16.65593 -16.05888 -15.67047 -15.51409 -15.26996 -14.95683 -14.73185 -14.55866 -14.53832 -14.24819 -14.18997 -13.42061 -13.37122 -13.19674 -13.13003 -12.70234 -12.66562 -12.27606 -12.02685 -11.89375 -11.80145 -11.78207 -11.07818 -11.05191 -10.87401 -10.72492 -10.59037 -10.56869 -10.04076 -9.96438 -9.78528 -9.19659 -8.92083 -8.83634 -8.67101 -8.56453 -8.41602 -6.95406 -5.77749 -3.07769 1.42781 1.46911 1.65776 1.98325 2.80547 3.25661 3.38555 3.42481 3.47794 3.50379 3.82243 4.04352 4.32997 4.60528 4.60789 4.67713 4.68856 4.78455 4.85257 4.91492 5.00421 5.21556 5.23041 5.37486 5.38386 5.38699 5.41311 5.56389 5.60176 5.70338 5.74103 5.78285 5.86937 5.88429 6.09415 6.15027 6.18516 6.21682 6.34821 6.40154 6.48995 6.53746 6.57379 6.65301 6.73084 7.02796 7.10684 7.23709 7.50645 7.68012 8.25770 8.39911 9.51566 10.07689 10.43338 11.44724 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.001629 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.020866 B =17186.756862 C =17679.099558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.184 3.816 11 C -0.065 4.065 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.123 4.123 15 C 0.168 3.832 16 N -0.725 5.725 17 C 0.587 3.413 18 O -0.543 6.543 19 C -0.220 4.220 20 C 0.048 3.952 21 N -0.548 5.548 22 H 0.418 0.582 23 C -0.024 4.024 24 C -0.075 4.075 25 C -0.076 4.076 26 C -0.182 4.182 27 C -0.172 4.172 28 C -0.104 4.104 29 C -0.107 4.107 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.398 0.602 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.119 0.881 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -32.701 -0.199 32.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.066 4.066 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.045 3.955 16 N -0.376 5.376 17 C 0.376 3.624 18 O -0.421 6.421 19 C -0.230 4.230 20 C -0.088 4.088 21 N -0.142 5.142 22 H 0.255 0.745 23 C -0.152 4.152 24 C -0.081 4.081 25 C -0.095 4.095 26 C -0.219 4.219 27 C -0.209 4.209 28 C -0.122 4.122 29 C -0.125 4.125 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.232 0.768 39 H 0.190 0.810 40 H 0.184 0.816 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.137 0.863 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.260 -32.639 -0.200 32.640 hybrid contribution 1.089 0.932 -0.013 1.433 sum 0.829 -31.707 -0.213 31.718 Atomic orbital electron populations 1.69687 1.05133 1.25609 1.57443 1.24765 0.95535 0.97724 1.02842 0.86100 0.78750 0.84008 0.77213 1.20520 1.21827 1.21821 1.19286 0.91092 0.83966 1.43050 0.91013 1.42347 1.05966 0.99291 1.89507 1.19702 0.91887 0.83984 0.98685 1.20383 0.97282 0.96105 0.92815 1.21119 0.97333 0.95889 0.98187 1.20999 0.97383 0.96730 0.97131 1.19706 1.00253 0.98618 0.93770 1.20124 0.92558 0.79870 1.02926 1.45963 1.10173 1.05228 1.76267 1.17397 0.86845 0.82478 0.75720 1.90749 1.13434 1.87467 1.50422 1.20318 0.92096 0.93094 1.17524 1.21962 0.96382 0.86056 1.04428 1.41456 1.08943 1.06027 1.57811 0.74490 1.21476 0.84213 0.97390 1.12086 1.19634 0.92905 0.90489 1.05107 1.20407 0.92261 0.93915 1.02932 1.23008 1.03137 0.95581 1.00184 1.22990 1.02431 1.03972 0.91484 1.20999 0.97359 0.96740 0.97133 1.21119 0.97289 0.95938 0.98184 0.93492 0.78034 0.95441 0.95429 0.85863 0.86316 0.90773 0.90773 0.76834 0.80964 0.81557 0.85869 0.89121 0.88644 0.88651 0.89037 0.86312 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.56 5.59 -61.09 -0.34 -18.91 16 10 C 0.18 3.72 6.38 -5.20 -0.03 3.68 16 11 C -0.07 -1.11 5.25 -104.62 -0.55 -1.66 16 12 C -0.11 -1.63 9.70 -39.58 -0.38 -2.02 16 13 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 14 C -0.12 -1.53 5.25 -104.62 -0.55 -2.08 16 15 C 0.17 1.94 5.80 -5.20 -0.03 1.91 16 16 N -0.72 -7.45 5.54 -62.62 -0.35 -7.80 16 17 C 0.59 7.26 7.81 -12.59 -0.10 7.16 16 18 O -0.54 -8.60 15.41 5.25 0.08 -8.52 16 19 C -0.22 -2.24 6.29 -103.35 -0.65 -2.89 16 20 C 0.05 0.32 11.40 -16.84 -0.19 0.12 16 21 N -0.55 -2.69 5.90 -12.84 -0.08 -2.77 16 22 H 0.42 0.61 8.96 -40.82 -0.37 0.24 16 23 C -0.02 -0.16 11.26 -16.82 -0.19 -0.35 16 24 C -0.07 -0.73 6.02 -102.54 -0.62 -1.35 16 25 C -0.08 -0.76 5.79 -91.77 -0.53 -1.29 16 26 C -0.18 -1.30 10.03 -26.69 -0.27 -1.56 16 27 C -0.17 -1.39 10.24 -26.69 -0.27 -1.67 16 28 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 29 C -0.11 -1.63 9.70 -39.58 -0.38 -2.02 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.55 7.66 -40.82 -0.31 10.24 16 32 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.40 3.19 7.41 -40.82 -0.30 2.89 16 39 H 0.17 0.63 7.45 -52.48 -0.39 0.23 16 40 H 0.17 0.68 7.16 -52.49 -0.38 0.31 16 41 H 0.12 1.50 7.02 -51.93 -0.36 1.13 16 42 H 0.09 0.51 7.00 -51.93 -0.36 0.14 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -35.10 399.98 -11.38 -46.48 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.66 Total: 10.69 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -5.76 Total: -14.90 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.04 Total: -57.12 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.10 -11.38 -46.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267939663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.890 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds