Wall clock time and date at job start Sat Apr 11 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48493 * 109.46941 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46939 * 299.99932 * 3 2 1 6 6 H 1.48495 * 109.46973 * 59.99605 * 3 2 1 7 7 C 1.38804 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00415 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47006 * 179.97438 * 10 9 7 12 12 C 1.38240 * 119.99989 * 90.00060 * 11 10 9 13 13 C 1.38227 * 120.00179 * 179.97438 * 12 11 10 14 14 C 1.38240 * 120.00236 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00049 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46996 * 90.00055 * 15 14 13 17 17 C 1.34782 * 119.99864 * 180.02562 * 16 15 14 18 18 O 1.21626 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.47256 * 119.99791 * 180.02562 * 17 16 15 20 20 C 1.36771 * 126.94707 * 359.96777 * 19 17 16 21 21 N 1.34653 * 108.40101 * 180.02562 * 20 19 17 22 22 H 0.97001 * 124.85457 * 180.02562 * 21 20 19 23 23 C 1.36455 * 110.29669 * 0.02562 * 21 20 19 24 24 C 1.34487 * 108.85650 * 0.26539 * 23 21 20 25 25 C 1.50693 * 126.83263 * 179.73365 * 24 23 21 26 26 C 1.53003 * 117.50217 * 8.76959 * 25 24 23 27 27 C 1.53001 * 117.50048 * 300.10973 * 25 24 23 28 28 C 1.38235 * 119.99447 * 0.25541 * 14 13 12 29 29 C 1.38235 * 120.00375 * 359.48700 * 28 14 13 30 30 H 0.97003 * 119.99785 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99373 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46967 * 60.00084 * 10 9 7 33 33 H 1.09000 * 109.47167 * 299.99575 * 10 9 7 34 34 H 1.08005 * 119.99595 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.99649 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47104 * 330.00133 * 15 14 13 37 37 H 1.09000 * 109.47036 * 209.99612 * 15 14 13 38 38 H 0.96996 * 119.99894 * 359.97438 * 16 15 14 39 39 H 1.08005 * 125.79772 * 0.02770 * 20 19 17 40 40 H 1.08002 * 125.56819 * 179.97438 * 23 21 20 41 41 H 1.08998 * 115.55105 * 154.43936 * 25 24 23 42 42 H 1.09005 * 117.49531 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.49962 * 145.02134 * 26 25 24 44 44 H 1.08998 * 117.50185 * 214.98276 * 27 25 24 45 45 H 1.09002 * 117.49860 * 0.02562 * 27 25 24 46 46 H 1.07999 * 119.99656 * 179.73245 * 28 14 13 47 47 H 1.07995 * 120.00067 * 180.25483 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0786 -4.8022 0.0021 12 6 0.6299 -5.3283 -1.1950 13 6 -0.2680 -6.3793 -1.1946 14 6 -0.7177 -6.9039 0.0027 15 6 -1.6970 -8.0492 0.0030 16 7 -0.9645 -9.3180 0.0041 17 6 -1.6384 -10.4852 0.0040 18 8 -2.8547 -10.4852 0.0035 19 6 -0.9022 -11.7605 0.0057 20 6 0.4555 -11.9259 0.0069 21 7 0.7229 -13.2457 0.0077 22 1 1.6131 -13.6309 0.0089 23 6 -0.4375 -13.9637 0.0066 24 6 -1.4768 -13.1102 -0.0009 25 6 -2.9403 -13.4690 -0.0104 26 6 -3.3086 -14.9398 0.1952 27 6 -3.4566 -14.2993 -1.1872 28 6 -0.2734 -6.3739 1.1996 29 6 0.6286 -5.3264 1.1994 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6839 -3.7141 0.8922 33 1 2.6853 -3.7150 -0.8878 34 1 0.9810 -4.9182 -2.1304 35 1 -0.6181 -6.7906 -2.1299 36 1 -2.3232 -7.9920 -0.8873 37 1 -2.3240 -7.9909 0.8927 38 1 0.0055 -9.3180 0.0042 39 1 1.1886 -11.1328 0.0071 40 1 -0.5094 -15.0413 0.0065 41 1 -3.6110 -12.7190 0.4090 42 1 -2.4921 -15.6478 0.3377 43 1 -4.2216 -15.1573 0.7494 44 1 -4.4670 -14.0958 -1.5419 45 1 -2.7375 -14.5864 -1.9544 46 1 -0.6281 -6.7809 2.1350 47 1 0.9788 -4.9151 2.1345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267939663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:21 Heat of formation + Delta-G solvation = 45.352209 kcal Electronic energy + Delta-G solvation = -26987.884427 eV Core-core repulsion = 23136.083275 eV Total energy + Delta-G solvation = -3851.801152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14947 -40.67494 -39.77085 -37.86107 -36.89114 -35.66719 -33.74753 -32.23292 -31.83694 -31.41777 -30.00176 -28.25351 -26.06904 -24.37195 -24.06521 -23.60523 -23.43885 -23.14443 -21.68474 -20.70505 -19.92906 -19.32507 -19.31443 -17.50868 -17.08532 -16.73728 -16.71817 -16.29653 -16.14004 -15.84354 -15.78389 -15.24212 -15.18077 -14.97653 -14.88480 -14.78577 -14.32457 -14.09700 -13.99544 -13.71211 -13.34039 -13.20129 -13.05646 -12.95763 -12.79831 -12.55314 -12.33984 -12.13425 -11.95225 -11.89433 -11.71677 -11.65808 -11.26392 -10.99693 -10.88120 -10.12338 -9.80611 -9.62205 -9.45691 -9.09235 -9.03108 -7.95850 -5.26212 0.26526 0.52021 0.81043 1.43540 1.47839 1.48804 1.59127 2.27378 2.47048 2.56779 2.57500 2.93698 3.19113 3.37657 3.67531 3.79133 3.91672 4.00957 4.05690 4.14577 4.17718 4.24210 4.25200 4.27782 4.31228 4.33536 4.57770 4.60152 4.71899 4.78378 4.80982 4.85054 4.90929 4.91262 5.03147 5.08919 5.17818 5.21525 5.29928 5.38803 5.46612 5.48091 5.50325 5.62686 5.77356 5.82517 5.97807 6.07715 6.24982 6.66407 6.73939 7.31600 7.39589 8.04939 8.29646 9.27647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.001629 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.020866 B =17186.756862 C =17679.099558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.740 5.740 10 C 0.185 3.815 11 C -0.087 4.087 12 C -0.114 4.114 13 C -0.098 4.098 14 C -0.107 4.107 15 C 0.174 3.826 16 N -0.712 5.712 17 C 0.583 3.417 18 O -0.590 6.590 19 C -0.266 4.266 20 C 0.072 3.928 21 N -0.531 5.531 22 H 0.439 0.561 23 C -0.011 4.011 24 C -0.110 4.110 25 C -0.101 4.101 26 C -0.161 4.161 27 C -0.174 4.174 28 C -0.098 4.098 29 C -0.114 4.114 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.204 0.796 40 H 0.196 0.804 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.140 0.860 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -35.006 -0.223 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.382 5.382 10 C 0.060 3.940 11 C -0.088 4.088 12 C -0.133 4.133 13 C -0.116 4.116 14 C -0.107 4.107 15 C 0.051 3.949 16 N -0.364 5.364 17 C 0.374 3.626 18 O -0.472 6.472 19 C -0.276 4.276 20 C -0.067 4.067 21 N -0.126 5.126 22 H 0.279 0.721 23 C -0.139 4.139 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.198 4.198 27 C -0.211 4.211 28 C -0.116 4.116 29 C -0.133 4.133 30 H 0.060 0.940 31 H 0.205 0.795 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.247 0.753 39 H 0.221 0.779 40 H 0.212 0.788 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.158 0.842 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.960 -34.992 -0.223 35.048 hybrid contribution 0.441 1.504 -0.001 1.567 sum 2.402 -33.488 -0.224 33.575 Atomic orbital electron populations 1.69849 1.06761 1.26064 1.59360 1.25617 0.96398 1.01240 1.03507 0.85026 0.78288 0.79500 0.76638 1.18775 1.22044 1.22034 1.19722 0.91658 0.85120 1.41414 0.90258 1.42559 1.05559 1.00667 1.89444 1.19773 0.92459 0.83137 0.98660 1.20165 0.98250 0.96125 0.94213 1.21165 0.97963 0.96601 0.97572 1.21178 0.96351 0.95787 0.98322 1.19768 0.99350 0.98215 0.93410 1.19981 0.92277 0.80107 1.02581 1.45779 1.10705 1.04284 1.75663 1.17824 0.86472 0.83563 0.74766 1.90721 1.15516 1.88127 1.52836 1.20324 0.93781 0.92310 1.21212 1.22323 0.95461 0.87368 1.01533 1.41506 1.09673 1.05426 1.56028 0.72065 1.21796 0.83738 0.98345 1.10003 1.19821 0.93320 0.91201 1.07221 1.20276 0.92537 0.94628 1.04553 1.23101 1.03824 0.93997 0.98883 1.23029 1.02291 1.03794 0.91958 1.21180 0.96331 0.95798 0.98329 1.21164 0.97918 0.96646 0.97568 0.93996 0.79540 0.95084 0.95069 0.85980 0.84218 0.91243 0.91224 0.75288 0.77886 0.78765 0.89531 0.86857 0.88292 0.89154 0.88251 0.84212 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.74 -38.29 5.59 -347.19 -1.94 -40.23 16 10 C 0.19 7.49 6.38 85.63 0.55 8.04 16 11 C -0.09 -2.93 5.25 -19.86 -0.10 -3.03 16 12 C -0.11 -3.42 9.70 22.27 0.22 -3.21 16 13 C -0.10 -2.41 9.70 22.27 0.22 -2.20 16 14 C -0.11 -2.48 5.25 -19.87 -0.10 -2.59 16 15 C 0.17 3.85 5.80 85.63 0.50 4.35 16 16 N -0.71 -13.85 5.54 -470.27 -2.60 -16.46 16 17 C 0.58 14.52 7.81 86.61 0.68 15.20 16 18 O -0.59 -19.75 15.41 -4.11 -0.06 -19.82 16 19 C -0.27 -5.19 6.29 -19.04 -0.12 -5.31 16 20 C 0.07 0.73 11.40 83.92 0.96 1.69 16 21 N -0.53 -3.30 5.90 -194.55 -1.15 -4.45 16 22 H 0.44 -0.65 8.96 -92.71 -0.83 -1.48 16 23 C -0.01 -0.11 11.26 83.12 0.94 0.83 16 24 C -0.11 -2.05 6.02 -18.51 -0.11 -2.16 16 25 C -0.10 -2.07 5.79 -11.54 -0.07 -2.13 16 26 C -0.16 -2.13 10.03 30.62 0.31 -1.82 16 27 C -0.17 -2.80 10.24 30.62 0.31 -2.49 16 28 C -0.10 -2.42 9.70 22.27 0.22 -2.20 16 29 C -0.11 -3.42 9.70 22.27 0.22 -3.21 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.37 20.90 7.66 -92.70 -0.71 20.19 16 32 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 37 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.41 5.67 7.41 -92.71 -0.69 4.98 16 39 H 0.20 0.64 7.45 -2.91 -0.02 0.62 16 40 H 0.20 0.81 7.16 -2.91 -0.02 0.79 16 41 H 0.09 2.36 7.02 -2.39 -0.02 2.35 16 42 H 0.11 0.95 7.00 -2.38 -0.02 0.93 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 47 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -78.91 399.98 1.24 -77.67 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -1.21 Total: 32.22 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.90 Total: -17.23 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.41 Total: -121.10 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -78.91 1.24 -77.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267939663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.019 kcal (2) G-P(sol) polarization free energy of solvation -78.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds