Wall clock time and date at job start Sat Apr 11 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47437 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99913 * 3 2 1 7 7 C 1.38812 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99555 * 173.76455 * 9 7 2 11 11 C 1.52994 * 112.85514 * 294.86331 * 10 9 7 12 12 N 1.46496 * 109.47277 * 292.10914 * 11 10 9 13 13 C 1.34774 * 120.00168 * 180.19358 * 12 11 10 14 14 O 1.21549 * 120.00083 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.00095 * 179.97438 * 13 12 11 16 16 C 1.39618 * 120.11361 * 359.72998 * 15 13 12 17 17 C 1.37985 * 119.98643 * 179.74289 * 16 15 13 18 18 C 1.38257 * 120.21387 * 0.55439 * 17 16 15 19 19 C 1.38909 * 120.23084 * 359.69068 * 18 17 16 20 20 N 1.40227 * 119.99381 * 180.02562 * 19 18 17 21 21 C 1.36568 * 125.66493 * 179.67640 * 20 19 18 22 22 C 1.34857 * 108.20035 * 179.89566 * 21 20 19 23 23 C 1.40940 * 107.46261 * 0.36307 * 22 21 20 24 24 C 1.34846 * 107.47198 * 359.77340 * 23 22 21 25 25 C 1.38585 * 120.01265 * 0.03316 * 19 18 17 26 26 C 1.53787 * 113.68956 * 66.13385 * 10 9 7 27 27 C 1.53786 * 87.07959 * 89.12585 * 26 10 9 28 28 C 1.53781 * 87.08361 * 25.43289 * 27 26 10 29 29 H 0.97008 * 119.99729 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00182 * 353.76875 * 9 7 2 31 31 H 1.08999 * 109.47681 * 172.10328 * 11 10 9 32 32 H 1.09010 * 109.47124 * 52.10309 * 11 10 9 33 33 H 0.97005 * 120.00281 * 0.18552 * 12 11 10 34 34 H 1.07998 * 120.00621 * 0.02562 * 16 15 13 35 35 H 1.08001 * 119.88983 * 180.27030 * 17 16 15 36 36 H 1.08007 * 119.88679 * 179.72343 * 18 17 16 37 37 H 1.08001 * 125.90328 * 359.97438 * 21 20 19 38 38 H 1.07995 * 126.26817 * 180.13777 * 22 21 20 39 39 H 1.08003 * 126.26476 * 179.77464 * 23 22 21 40 40 H 1.08005 * 125.90116 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.11409 * 180.02562 * 25 19 18 42 42 H 1.08997 * 113.61597 * 203.67038 * 26 10 9 43 43 H 1.09003 * 113.61325 * 334.57689 * 26 10 9 44 44 H 1.09000 * 113.61003 * 270.88370 * 27 26 10 45 45 H 1.08993 * 113.61450 * 139.98237 * 27 26 10 46 46 H 1.08998 * 113.61168 * 220.02457 * 28 27 26 47 47 H 1.08991 * 113.61334 * 89.11324 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0514 -3.6531 -0.1367 11 6 2.7379 -3.7998 -1.4961 12 7 1.7229 -3.9336 -2.5439 13 6 2.0975 -4.0801 -3.8302 14 8 3.2775 -4.1007 -4.1210 15 6 1.0730 -4.2157 -4.8877 16 6 -0.2830 -4.1979 -4.5557 17 6 -1.2370 -4.3194 -5.5453 18 6 -0.8547 -4.4702 -6.8654 19 6 0.4919 -4.4942 -7.2052 20 7 0.8740 -4.6469 -8.5457 21 6 2.1584 -4.6797 -9.0088 22 6 2.1196 -4.8418 -10.3471 23 6 0.7636 -4.9033 -10.7265 24 6 0.0236 -4.7816 -9.6058 25 6 1.4579 -4.3673 -6.2196 26 6 2.9703 -3.9706 1.0549 27 6 1.7624 -4.6723 1.6982 28 6 1.2261 -4.8846 0.2727 29 1 -0.4850 0.8401 -0.0004 30 1 0.3597 -2.3905 0.0913 31 1 3.3721 -4.6863 -1.4892 32 1 3.3482 -2.9181 -1.6920 33 1 0.7811 -3.9169 -2.3119 34 1 -0.5853 -4.0846 -3.5251 35 1 -2.2855 -4.3011 -5.2872 36 1 -1.6058 -4.5693 -7.6352 37 1 3.0510 -4.5924 -8.4072 38 1 2.9714 -4.9083 -11.0075 39 1 0.3862 -5.0256 -11.7311 40 1 -1.0552 -4.7889 -9.5553 41 1 2.5053 -4.3853 -6.4820 42 1 3.7878 -4.6478 0.8076 43 1 3.3018 -3.0859 1.5985 44 1 1.1438 -4.0095 2.3033 45 1 2.0183 -5.5994 2.2110 46 1 0.1497 -4.7376 0.1848 47 1 1.5669 -5.8114 -0.1885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273114622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:43 Heat of formation + Delta-G solvation = 82.144433 kcal Electronic energy + Delta-G solvation = -28485.916440 eV Core-core repulsion = 24635.710719 eV Total energy + Delta-G solvation = -3850.205721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80165 -40.02726 -38.92933 -37.94032 -34.19628 -33.37604 -33.23603 -31.59883 -30.10547 -29.17418 -28.99556 -27.25179 -25.35530 -24.28571 -23.64193 -23.18296 -21.79380 -21.00897 -20.15016 -19.74856 -18.97199 -18.16148 -17.20471 -16.76571 -16.31989 -15.89768 -15.33963 -15.18341 -14.82643 -14.70720 -14.57798 -14.32248 -14.03492 -13.90662 -13.64887 -13.36808 -13.27871 -12.89939 -12.56913 -12.52510 -12.36544 -12.08869 -11.98606 -11.82250 -11.53093 -11.29292 -11.06048 -10.89714 -10.40920 -10.27052 -10.15710 -10.08157 -9.80894 -9.73563 -9.52822 -9.28865 -8.94109 -8.60043 -8.44675 -8.21843 -7.09907 -5.87957 -3.17776 0.55273 0.85746 2.18441 2.59479 2.80995 2.99942 3.37989 3.43544 3.45923 3.46513 3.78817 4.44836 4.48651 4.50786 4.70589 4.87734 4.92329 4.92518 5.03002 5.12437 5.19307 5.22957 5.27097 5.34118 5.38570 5.45667 5.50282 5.61557 5.72377 5.77052 5.96228 6.01200 6.06321 6.08885 6.09656 6.12615 6.14141 6.26810 6.32874 6.41838 6.47351 6.65078 6.71336 6.81415 6.90479 6.98973 6.99189 7.22436 7.66007 7.83706 8.30818 8.46741 9.42463 9.95065 10.30323 11.34047 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002706 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.555078 B =10343.032784 C =11165.859437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.119 3.881 12 N -0.695 5.695 13 C 0.552 3.448 14 O -0.546 6.546 15 C -0.095 4.095 16 C -0.094 4.094 17 C -0.095 4.095 18 C -0.121 4.121 19 C 0.128 3.872 20 N -0.395 5.395 21 C -0.011 4.011 22 C -0.194 4.194 23 C -0.192 4.192 24 C -0.017 4.017 25 C -0.084 4.084 26 C -0.150 4.150 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.401 0.599 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.143 0.857 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 -13.386 -12.724 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.007 4.007 12 N -0.344 5.344 13 C 0.337 3.663 14 O -0.426 6.426 15 C -0.099 4.099 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.141 4.141 19 C 0.036 3.964 20 N -0.067 5.067 21 C -0.138 4.138 22 C -0.218 4.218 23 C -0.216 4.216 24 C -0.144 4.144 25 C -0.104 4.104 26 C -0.191 4.191 27 C -0.166 4.166 28 C -0.183 4.183 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.184 0.816 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.160 0.840 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.039 -13.196 -12.624 18.376 hybrid contribution -0.334 1.149 0.067 1.198 sum -2.373 -12.047 -12.558 17.563 Atomic orbital electron populations 1.69658 1.05064 1.25670 1.57411 1.24723 0.95487 0.97658 1.02558 0.86166 0.79015 0.84158 0.77164 1.20448 1.21857 1.21866 1.19141 0.91117 0.83573 1.42835 0.91052 1.42071 1.06088 0.99047 1.86794 1.20824 0.93093 0.87473 0.90623 1.21938 0.90424 1.00832 0.87502 1.45688 1.11180 1.71614 1.05892 1.18085 0.88004 0.77417 0.82747 1.90744 1.17982 1.51404 1.82446 1.19901 0.93829 1.02687 0.93474 1.21483 0.91718 0.97638 1.00512 1.20972 1.00225 0.98704 0.91492 1.20964 0.93419 1.02047 0.97654 1.17741 0.93893 1.02593 0.82218 1.41644 1.06894 1.54128 1.04000 1.22023 0.86714 1.09540 0.95553 1.20993 0.97299 1.09423 0.94040 1.20982 0.93384 1.09403 0.97845 1.21880 0.96323 1.10415 0.85792 1.20857 0.99751 0.99076 0.90735 1.23311 0.96375 1.00417 0.98955 1.22631 0.98507 0.99570 0.95857 1.23158 0.99870 0.97835 0.97475 0.93528 0.77934 0.92467 0.91011 0.76389 0.84584 0.84298 0.84946 0.81605 0.84175 0.84240 0.81843 0.83957 0.91268 0.90657 0.90000 0.92689 0.91660 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.41 13.07 55.49 0.73 -25.68 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.06 9.05 -15.06 -0.14 -6.19 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.70 -15.51 5.19 -46.47 -0.24 -15.75 16 10 C 0.17 3.05 0.81 -131.00 -0.11 2.95 16 11 C 0.12 2.12 5.08 -4.05 -0.02 2.10 16 12 N -0.69 -11.45 5.37 -61.25 -0.33 -11.78 16 13 C 0.55 9.46 7.77 -12.33 -0.10 9.37 16 14 O -0.55 -11.01 16.34 5.32 0.09 -10.93 16 15 C -0.10 -1.36 5.87 -104.99 -0.62 -1.97 16 16 C -0.09 -1.11 9.54 -39.16 -0.37 -1.49 16 17 C -0.10 -0.94 10.02 -39.67 -0.40 -1.33 16 18 C -0.12 -1.22 9.45 -39.33 -0.37 -1.59 16 19 C 0.13 1.54 6.61 -83.64 -0.55 0.99 16 20 N -0.40 -4.65 2.97 -60.96 -0.18 -4.84 16 21 C -0.01 -0.13 10.73 -16.64 -0.18 -0.31 16 22 C -0.19 -2.04 10.86 -39.76 -0.43 -2.48 16 23 C -0.19 -1.92 10.86 -39.76 -0.43 -2.35 16 24 C -0.02 -0.18 10.73 -16.65 -0.18 -0.36 16 25 C -0.08 -1.14 9.00 -38.99 -0.35 -1.49 16 26 C -0.15 -2.47 7.28 -25.91 -0.19 -2.66 16 27 C -0.13 -1.90 7.99 -25.92 -0.21 -2.11 16 28 C -0.15 -2.11 7.04 -25.91 -0.18 -2.29 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.39 9.11 7.87 -40.82 -0.32 8.79 16 31 H 0.06 0.95 8.01 -51.93 -0.42 0.54 16 32 H 0.07 1.50 7.80 -51.92 -0.41 1.10 16 33 H 0.40 6.02 6.33 -40.82 -0.26 5.76 16 34 H 0.14 1.46 6.40 -52.49 -0.34 1.12 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.99 6.69 -52.48 -0.35 0.64 16 37 H 0.17 1.69 7.01 -52.49 -0.37 1.32 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.16 1.19 7.00 -52.48 -0.37 0.83 16 41 H 0.14 1.96 6.29 -52.49 -0.33 1.63 16 42 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 43 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 47 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -31.25 390.08 -10.48 -41.72 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -6.48 Total: 16.00 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -4.92 Total: -11.53 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.03 Total: -58.05 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.25 -10.48 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273114622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.868 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds