Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47437 * 299.99696 * 3 2 1 6 6 H 1.48500 * 109.47233 * 59.99913 * 3 2 1 7 7 C 1.38812 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99555 * 173.76455 * 9 7 2 11 11 C 1.52994 * 112.85514 * 294.86331 * 10 9 7 12 12 N 1.46496 * 109.47277 * 292.10914 * 11 10 9 13 13 C 1.34774 * 120.00168 * 180.19358 * 12 11 10 14 14 O 1.21549 * 120.00083 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.00095 * 179.97438 * 13 12 11 16 16 C 1.39618 * 120.11361 * 359.72998 * 15 13 12 17 17 C 1.37985 * 119.98643 * 179.74289 * 16 15 13 18 18 C 1.38257 * 120.21387 * 0.55439 * 17 16 15 19 19 C 1.38909 * 120.23084 * 359.69068 * 18 17 16 20 20 N 1.40227 * 119.99381 * 180.02562 * 19 18 17 21 21 C 1.36568 * 125.66493 * 179.67640 * 20 19 18 22 22 C 1.34857 * 108.20035 * 179.89566 * 21 20 19 23 23 C 1.40940 * 107.46261 * 0.36307 * 22 21 20 24 24 C 1.34846 * 107.47198 * 359.77340 * 23 22 21 25 25 C 1.38585 * 120.01265 * 0.03316 * 19 18 17 26 26 C 1.53787 * 113.68956 * 66.13385 * 10 9 7 27 27 C 1.53786 * 87.07959 * 89.12585 * 26 10 9 28 28 C 1.53781 * 87.08361 * 25.43289 * 27 26 10 29 29 H 0.97008 * 119.99729 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00182 * 353.76875 * 9 7 2 31 31 H 1.08999 * 109.47681 * 172.10328 * 11 10 9 32 32 H 1.09010 * 109.47124 * 52.10309 * 11 10 9 33 33 H 0.97005 * 120.00281 * 0.18552 * 12 11 10 34 34 H 1.07998 * 120.00621 * 0.02562 * 16 15 13 35 35 H 1.08001 * 119.88983 * 180.27030 * 17 16 15 36 36 H 1.08007 * 119.88679 * 179.72343 * 18 17 16 37 37 H 1.08001 * 125.90328 * 359.97438 * 21 20 19 38 38 H 1.07995 * 126.26817 * 180.13777 * 22 21 20 39 39 H 1.08003 * 126.26476 * 179.77464 * 23 22 21 40 40 H 1.08005 * 125.90116 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.11409 * 180.02562 * 25 19 18 42 42 H 1.08997 * 113.61597 * 203.67038 * 26 10 9 43 43 H 1.09003 * 113.61325 * 334.57689 * 26 10 9 44 44 H 1.09000 * 113.61003 * 270.88370 * 27 26 10 45 45 H 1.08993 * 113.61450 * 139.98237 * 27 26 10 46 46 H 1.08998 * 113.61168 * 220.02457 * 28 27 26 47 47 H 1.08991 * 113.61334 * 89.11324 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0514 -3.6531 -0.1367 11 6 2.7379 -3.7998 -1.4961 12 7 1.7229 -3.9336 -2.5439 13 6 2.0975 -4.0801 -3.8302 14 8 3.2775 -4.1007 -4.1210 15 6 1.0730 -4.2157 -4.8877 16 6 -0.2830 -4.1979 -4.5557 17 6 -1.2370 -4.3194 -5.5453 18 6 -0.8547 -4.4702 -6.8654 19 6 0.4919 -4.4942 -7.2052 20 7 0.8740 -4.6469 -8.5457 21 6 2.1584 -4.6797 -9.0088 22 6 2.1196 -4.8418 -10.3471 23 6 0.7636 -4.9033 -10.7265 24 6 0.0236 -4.7816 -9.6058 25 6 1.4579 -4.3673 -6.2196 26 6 2.9703 -3.9706 1.0549 27 6 1.7624 -4.6723 1.6982 28 6 1.2261 -4.8846 0.2727 29 1 -0.4850 0.8401 -0.0004 30 1 0.3597 -2.3905 0.0913 31 1 3.3721 -4.6863 -1.4892 32 1 3.3482 -2.9181 -1.6920 33 1 0.7811 -3.9169 -2.3119 34 1 -0.5853 -4.0846 -3.5251 35 1 -2.2855 -4.3011 -5.2872 36 1 -1.6058 -4.5693 -7.6352 37 1 3.0510 -4.5924 -8.4072 38 1 2.9714 -4.9083 -11.0075 39 1 0.3862 -5.0256 -11.7311 40 1 -1.0552 -4.7889 -9.5553 41 1 2.5053 -4.3853 -6.4820 42 1 3.7878 -4.6478 0.8076 43 1 3.3018 -3.0859 1.5985 44 1 1.1438 -4.0095 2.3033 45 1 2.0183 -5.5994 2.2110 46 1 0.1497 -4.7376 0.1848 47 1 1.5669 -5.8114 -0.1885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273114622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 64.915394 kcal Electronic energy + Delta-G solvation = -28486.663547 eV Core-core repulsion = 24635.710719 eV Total energy + Delta-G solvation = -3850.952829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61911 -41.26923 -40.18381 -39.09779 -35.54662 -35.22660 -34.20138 -32.55128 -31.91307 -30.13688 -29.79803 -28.60189 -26.73255 -25.85531 -24.93045 -24.10878 -23.05679 -22.10121 -20.98939 -20.75217 -20.01769 -19.54649 -19.10950 -17.86664 -17.35721 -17.09921 -16.74175 -16.32159 -16.00821 -15.88459 -15.85310 -15.66169 -15.27438 -15.06966 -14.91060 -14.57909 -14.41772 -14.27925 -13.85004 -13.41862 -13.27602 -13.15911 -13.09381 -12.98443 -12.94778 -12.79841 -12.56490 -12.45241 -12.15742 -11.95027 -11.62019 -11.49555 -11.19991 -10.94531 -10.91878 -10.76654 -10.28350 -9.97242 -9.24217 -9.07429 -8.99419 -7.95531 -5.21636 -0.38843 -0.06329 1.32696 1.42200 1.45503 1.52252 1.75548 1.86372 2.03497 2.19384 2.53126 2.75653 3.36065 3.50974 3.63771 3.73521 3.79940 3.82518 3.96364 3.98696 4.04266 4.08454 4.11926 4.21612 4.25802 4.42757 4.56534 4.62242 4.69010 4.77518 4.81728 4.87796 4.91379 4.95776 4.99937 5.13195 5.13304 5.21508 5.28863 5.29339 5.33397 5.40754 5.45333 5.58467 5.62097 5.70053 5.94778 6.19036 6.29427 6.41775 6.51825 7.13834 7.36040 8.09019 8.33396 9.26863 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002706 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.555078 B =10343.032784 C =11165.859437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.064 4.064 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.221 4.221 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.158 3.842 11 C 0.127 3.873 12 N -0.690 5.690 13 C 0.547 3.453 14 O -0.587 6.587 15 C -0.117 4.117 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.109 4.109 19 C 0.120 3.880 20 N -0.405 5.405 21 C -0.042 4.042 22 C -0.198 4.198 23 C -0.202 4.202 24 C -0.021 4.021 25 C -0.100 4.100 26 C -0.150 4.150 27 C -0.120 4.120 28 C -0.127 4.127 29 H 0.249 0.751 30 H 0.379 0.621 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.409 0.591 34 H 0.146 0.854 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.195 0.805 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -15.149 -13.617 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.353 4.353 8 H 0.082 0.918 9 N -0.343 5.343 10 C 0.067 3.933 11 C 0.001 3.999 12 N -0.339 5.339 13 C 0.335 3.665 14 O -0.469 6.469 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.103 4.103 18 C -0.129 4.129 19 C 0.027 3.973 20 N -0.077 5.077 21 C -0.168 4.168 22 C -0.222 4.222 23 C -0.226 4.226 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.190 4.190 27 C -0.157 4.157 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.212 0.788 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.246 0.754 34 H 0.163 0.837 35 H 0.194 0.806 36 H 0.184 0.816 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.212 0.788 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.946 -14.995 -13.512 20.566 hybrid contribution 0.309 1.613 0.265 1.664 sum -3.637 -13.382 -13.246 19.177 Atomic orbital electron populations 1.69757 1.05888 1.25602 1.59672 1.25278 0.96209 1.00041 1.04182 0.85376 0.78297 0.81439 0.76510 1.19949 1.22654 1.21993 1.19304 0.90940 0.84953 1.40087 0.91760 1.42093 1.05790 0.99777 1.86671 1.21114 0.94376 0.87120 0.90703 1.21770 0.90576 0.99701 0.87872 1.45632 1.11314 1.71308 1.05614 1.18607 0.88189 0.76313 0.83349 1.90709 1.19851 1.53330 1.83056 1.19701 0.94205 1.05507 0.92692 1.21666 0.90875 0.97263 1.01735 1.21391 1.01505 0.96698 0.90727 1.21403 0.92975 0.99786 0.98708 1.17896 0.94543 1.02663 0.82166 1.41785 1.07176 1.54577 1.04170 1.22226 0.87161 1.11149 0.96285 1.21328 0.98492 1.08500 0.93867 1.21357 0.93009 1.09179 0.99044 1.22487 0.97698 1.09302 0.85198 1.20792 0.99638 1.00407 0.91234 1.23343 0.97608 1.00138 0.97960 1.22557 0.96948 1.00209 0.96034 1.23114 0.99775 0.96813 0.96784 0.94172 0.78781 0.90945 0.94986 0.75436 0.83674 0.80583 0.81576 0.81906 0.82773 0.81992 0.78770 0.85602 0.88850 0.93399 0.91902 0.89622 0.91093 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.27 13.07 21.65 0.28 -54.99 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.95 45.97 29.55 68.60 2.03 48.00 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 7 C -0.22 -11.54 9.05 84.03 0.76 -10.78 16 8 H 0.06 3.41 7.83 -2.91 -0.02 3.38 16 9 N -0.70 -31.43 5.19 -300.95 -1.56 -32.99 16 10 C 0.16 5.49 0.81 4.13 0.00 5.50 16 11 C 0.13 4.56 5.08 86.38 0.44 5.00 16 12 N -0.69 -22.85 5.37 -465.98 -2.50 -25.36 16 13 C 0.55 19.37 7.77 86.79 0.67 20.05 16 14 O -0.59 -24.92 16.34 -3.87 -0.06 -24.98 16 15 C -0.12 -3.38 5.87 -20.10 -0.12 -3.50 16 16 C -0.10 -2.12 9.54 22.54 0.22 -1.91 16 17 C -0.09 -1.38 10.02 22.21 0.22 -1.16 16 18 C -0.11 -1.84 9.45 22.44 0.21 -1.63 16 19 C 0.12 2.77 6.61 38.04 0.25 3.02 16 20 N -0.40 -9.15 2.97 -346.78 -1.03 -10.18 16 21 C -0.04 -0.98 10.73 83.18 0.89 -0.09 16 22 C -0.20 -4.04 10.86 22.15 0.24 -3.80 16 23 C -0.20 -3.64 10.86 22.15 0.24 -3.40 16 24 C -0.02 -0.38 10.73 83.18 0.89 0.52 16 25 C -0.10 -2.80 9.00 22.65 0.20 -2.60 16 26 C -0.15 -4.78 7.28 31.12 0.23 -4.56 16 27 C -0.12 -3.29 7.99 31.12 0.25 -3.04 16 28 C -0.13 -3.36 7.04 31.12 0.22 -3.14 16 29 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.38 17.97 7.87 -92.71 -0.73 17.24 16 31 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 32 H 0.03 1.39 7.80 -2.38 -0.02 1.37 16 33 H 0.41 12.06 6.33 -92.70 -0.59 11.48 16 34 H 0.15 2.85 6.40 -2.91 -0.02 2.83 16 35 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.17 1.66 6.69 -2.91 -0.02 1.64 16 37 H 0.16 3.66 7.01 -2.91 -0.02 3.64 16 38 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.20 2.03 7.00 -2.91 -0.02 2.01 16 41 H 0.13 3.81 6.29 -2.91 -0.02 3.79 16 42 H 0.09 2.51 8.01 -2.39 -0.02 2.49 16 43 H 0.05 1.78 7.87 -2.39 -0.02 1.76 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 47 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -70.35 390.08 3.13 -67.22 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.31 Total: 41.88 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 6.29 Total: -8.59 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -4.81 Total: -123.51 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -70.35 3.13 -67.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273114622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.134 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds