Wall clock time and date at job start Sat Apr 11 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39725 * 120.20476 * 268.11819 * 3 2 1 5 5 C 1.37802 * 119.91778 * 179.74394 * 4 3 2 6 6 C 1.38566 * 120.34550 * 0.26230 * 5 4 3 7 7 C 1.38026 * 120.42041 * 0.02562 * 6 5 4 8 8 C 1.38876 * 120.07148 * 359.97438 * 7 6 5 9 9 N 1.39030 * 120.17160 * 179.97438 * 8 7 6 10 10 C 1.47560 * 110.99687 * 299.86883 * 9 8 7 11 11 C 1.54575 * 107.28765 * 123.20387 * 10 9 8 12 12 C 1.53686 * 102.86729 * 20.96981 * 11 10 9 13 13 C 1.53222 * 111.54083 * 205.86727 * 12 11 10 14 14 C 1.54802 * 101.38987 * 214.18131 * 13 12 11 15 15 N 1.46922 * 105.53970 * 24.18344 * 14 13 12 16 16 C 1.46501 * 124.37361 * 163.22974 * 15 14 13 17 17 C 1.52999 * 109.47411 * 90.00098 * 16 15 14 18 18 C 1.50694 * 109.47490 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00250 * 179.97438 * 18 17 16 21 21 N 1.31505 * 119.99998 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46962 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47020 * 119.99609 * 22 20 18 25 25 H 1.48497 * 109.47272 * 239.99952 * 22 20 18 26 26 C 1.34887 * 111.24888 * 343.24905 * 15 14 13 27 27 O 1.21273 * 125.22218 * 181.27266 * 26 15 14 28 28 C 1.48119 * 111.00344 * 60.81617 * 9 8 7 29 29 H 1.08002 * 120.04481 * 0.03149 * 4 3 2 30 30 H 1.07994 * 119.82521 * 180.27760 * 5 4 3 31 31 H 1.08001 * 119.78987 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.96000 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.87646 * 242.62572 * 10 9 8 34 34 H 1.08997 * 109.88111 * 3.77807 * 10 9 8 35 35 H 1.09011 * 110.73516 * 139.31503 * 11 10 9 36 36 H 1.08998 * 110.73352 * 262.44195 * 11 10 9 37 37 H 1.08996 * 111.04022 * 332.20741 * 13 12 11 38 38 H 1.09000 * 111.03915 * 96.15416 * 13 12 11 39 39 H 1.09002 * 110.23171 * 143.20241 * 14 13 12 40 40 H 1.09004 * 110.23079 * 265.07617 * 14 13 12 41 41 H 1.09013 * 109.46886 * 209.99512 * 16 15 14 42 42 H 1.08999 * 109.47689 * 329.99359 * 16 15 14 43 43 H 1.08998 * 109.47077 * 299.99705 * 17 16 15 44 44 H 1.09001 * 109.47041 * 59.99753 * 17 16 15 45 45 H 0.96999 * 120.00332 * 179.97438 * 21 20 18 46 46 H 1.09000 * 110.39348 * 333.89440 * 28 9 8 47 47 H 1.09001 * 110.39442 * 96.29404 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2710 0.0406 1.2069 5 6 4.6490 0.0357 1.2002 6 6 5.3431 -0.0033 0.0015 7 6 4.6630 -0.0371 -1.1991 8 6 3.2743 -0.0327 -1.2126 9 7 2.5872 -0.0662 -2.4208 10 6 2.9264 1.1031 -3.2545 11 6 3.4616 0.5669 -4.6018 12 6 2.8962 -0.8613 -4.6507 13 6 3.7621 -1.7799 -5.5192 14 6 2.6928 -2.7127 -6.1380 15 7 1.4366 -1.9518 -6.0991 16 6 0.2438 -2.2839 -6.8822 17 6 -0.6448 -3.2360 -6.0792 18 6 -1.8720 -3.5771 -6.8845 19 1 -2.0051 -3.1565 -7.8703 20 6 -2.8249 -4.4261 -6.3628 21 7 -2.6626 -4.9386 -5.1626 22 14 -4.3465 -4.8483 -7.3608 23 1 -4.2905 -4.1479 -8.6690 24 1 -4.3988 -6.3150 -7.5870 25 1 -5.5595 -4.4182 -6.6200 26 6 1.5236 -0.9077 -5.2495 27 8 0.6280 -0.1268 -5.0069 28 6 2.9068 -1.2975 -3.1794 29 1 2.7350 0.0706 2.1441 30 1 5.1907 0.0621 2.1340 31 1 6.4231 -0.0064 0.0067 32 1 5.2115 -0.0669 -2.1290 33 1 2.0358 1.7084 -3.4239 34 1 3.6941 1.6996 -2.7617 35 1 3.0809 1.1613 -5.4325 36 1 4.5515 0.5538 -4.6063 37 1 4.2811 -1.2128 -6.2919 38 1 4.4678 -2.3439 -4.9093 39 1 2.9549 -2.9554 -7.1678 40 1 2.6013 -3.6246 -5.5480 41 1 -0.3098 -1.3717 -7.1055 42 1 0.5428 -2.7646 -7.8136 43 1 -0.0913 -4.1480 -5.8559 44 1 -0.9439 -2.7551 -5.1478 45 1 -3.3332 -5.5356 -4.7954 46 1 3.8924 -1.6703 -2.9007 47 1 2.1477 -2.0598 -3.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274818367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:05 Heat of formation + Delta-G solvation = 11.477337 kcal Electronic energy + Delta-G solvation = -29312.246640 eV Core-core repulsion = 25458.976563 eV Total energy + Delta-G solvation = -3853.270077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.40335 -40.77684 -38.57036 -37.47009 -37.38550 -35.84550 -34.39126 -32.51145 -32.17109 -30.62461 -29.89885 -28.87539 -27.08120 -25.20616 -24.62474 -23.88552 -23.39462 -21.83495 -21.79744 -19.96651 -19.79390 -18.73492 -17.87157 -17.39382 -17.08582 -16.84244 -16.61608 -16.14137 -15.82186 -15.61259 -15.24338 -15.10315 -14.92269 -14.60561 -14.52895 -14.39974 -14.25348 -14.12315 -13.97543 -13.80317 -13.67113 -13.36994 -13.14776 -13.08558 -12.93181 -12.87041 -12.58887 -12.53024 -12.42298 -12.07806 -12.06187 -11.95241 -11.79629 -11.65060 -11.43683 -10.68550 -10.57374 -9.89226 -9.64929 -9.55582 -9.47828 -8.29476 -6.43459 -0.16015 0.33766 1.32929 1.35809 1.48772 1.59766 1.73187 2.03267 2.14947 2.37046 2.68762 2.88239 3.01639 3.03798 3.27106 3.41198 3.56562 3.86166 3.98384 4.04151 4.16974 4.23464 4.25189 4.32384 4.35438 4.50133 4.50906 4.53758 4.59332 4.62002 4.68471 4.73904 4.79751 4.81914 4.93201 4.97155 5.00683 5.15330 5.20850 5.28290 5.38590 5.39724 5.42776 5.53292 5.56567 5.73832 5.79022 5.85427 6.09498 6.31499 6.37692 6.57755 6.72836 7.25560 7.28480 8.83058 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003014 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.798128 B = 9288.925484 C =10543.240671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.281 3.719 3 C -0.046 4.046 4 C -0.065 4.065 5 C -0.116 4.116 6 C -0.064 4.064 7 C -0.146 4.146 8 C 0.122 3.878 9 N -0.539 5.539 10 C 0.057 3.943 11 C -0.102 4.102 12 C -0.102 4.102 13 C -0.096 4.096 14 C 0.088 3.912 15 N -0.625 5.625 16 C 0.144 3.856 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.068 0.932 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.256 1.256 24 H -0.269 1.269 25 H -0.284 1.284 26 C 0.509 3.491 27 O -0.578 6.578 28 C 0.082 3.918 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.094 0.906 43 H -0.001 1.001 44 H -0.039 1.039 45 H 0.264 0.736 46 H 0.115 0.885 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.505 9.566 7.761 33.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.033 4.033 3 C -0.051 4.051 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.083 4.083 7 C -0.166 4.166 8 C 0.025 3.975 9 N -0.261 5.261 10 C -0.068 4.068 11 C -0.141 4.141 12 C -0.106 4.106 13 C -0.134 4.134 14 C -0.034 4.034 15 N -0.357 5.357 16 C 0.022 3.978 17 C -0.013 4.013 18 C -0.583 4.583 19 H 0.087 0.913 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.797 3.203 23 H -0.179 1.179 24 H -0.195 1.195 25 H -0.210 1.210 26 C 0.298 3.702 27 O -0.458 6.458 28 C -0.044 4.044 29 H 0.162 0.838 30 H 0.185 0.815 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.018 0.982 44 H -0.020 1.020 45 H 0.073 0.927 46 H 0.132 0.868 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 28.589 9.843 8.032 31.284 hybrid contribution -1.407 -0.484 -0.357 1.530 sum 27.182 9.359 7.675 29.755 Atomic orbital electron populations 1.81248 1.14549 1.11020 1.09813 1.26268 0.93475 0.92164 0.91414 1.16441 0.82590 1.10490 0.95550 1.21372 0.95680 0.96157 0.95340 1.21520 0.92286 0.99072 1.00520 1.21748 1.02201 0.93472 0.90867 1.21924 0.91688 1.01641 1.01300 1.19081 0.91800 0.97709 0.88895 1.60627 1.58011 1.03684 1.03760 1.22877 0.99764 0.91414 0.92776 1.22579 1.02911 0.91494 0.97078 1.21541 0.92620 1.00178 0.96259 1.22622 0.95633 0.95820 0.99303 1.22500 0.82049 0.95150 1.03689 1.48839 1.14875 1.28760 1.43251 1.21301 0.84539 0.97878 0.94061 1.19192 0.94462 0.93497 0.94105 1.21587 1.05728 1.28102 1.02906 0.91343 1.26107 1.02192 0.95674 0.96149 1.70141 1.36661 1.32698 1.17954 0.85275 0.77745 0.78434 0.78841 1.17922 1.19450 1.20989 1.21126 0.90582 0.80027 0.78477 1.90667 1.46446 1.45340 1.63322 1.22816 1.01714 0.90837 0.88999 0.83847 0.81521 0.81269 0.82305 0.94002 0.88732 0.91240 0.84709 0.86428 0.85084 0.87994 0.91929 0.93472 0.88756 0.98221 1.02019 0.92731 0.86775 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -20.65 18.54 19.01 0.35 -20.30 16 2 C 0.28 9.54 14.81 88.33 1.31 10.85 16 3 C -0.05 -1.06 5.76 -21.15 -0.12 -1.18 16 4 C -0.06 -0.89 9.75 22.53 0.22 -0.67 16 5 C -0.12 -0.76 10.02 22.24 0.22 -0.54 16 6 C -0.06 -0.31 10.03 22.30 0.22 -0.09 16 7 C -0.15 -1.40 7.79 22.37 0.17 -1.23 16 8 C 0.12 2.46 4.62 38.67 0.18 2.63 16 9 N -0.54 -14.46 4.54 -685.69 -3.11 -17.57 16 10 C 0.06 1.30 6.28 86.71 0.54 1.84 16 11 C -0.10 -1.80 5.78 31.36 0.18 -1.62 16 12 C -0.10 -2.42 0.67 -52.74 -0.04 -2.46 16 13 C -0.10 -1.35 6.27 31.28 0.20 -1.16 16 14 C 0.09 2.11 7.37 86.91 0.64 2.75 16 15 N -0.62 -23.63 2.95 -818.18 -2.41 -26.05 16 16 C 0.14 6.59 5.88 86.38 0.51 7.10 16 17 C 0.03 1.49 5.30 29.85 0.16 1.64 16 18 C -0.54 -33.15 9.11 25.60 0.23 -32.92 16 19 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.93 -61.25 13.29 21.45 0.28 -60.96 16 22 Si 0.97 46.88 29.54 68.60 2.03 48.91 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 26 C 0.51 20.12 6.77 87.37 0.59 20.72 16 27 O -0.58 -29.82 17.27 -3.01 -0.05 -29.87 16 28 C 0.08 2.01 5.54 86.22 0.48 2.48 16 29 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 31 H 0.17 -0.39 8.06 -2.91 -0.02 -0.41 16 32 H 0.16 0.65 7.74 -2.91 -0.02 0.62 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.45 7.02 -2.39 -0.02 1.44 16 35 H 0.07 1.45 8.00 -2.38 -0.02 1.44 16 36 H 0.13 0.92 8.05 -2.39 -0.02 0.90 16 37 H 0.12 1.01 7.96 -2.39 -0.02 0.99 16 38 H 0.13 0.87 7.63 -2.39 -0.02 0.85 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.05 2.33 7.96 -2.38 -0.02 2.31 16 42 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H -0.04 -2.68 8.14 -2.39 -0.02 -2.70 16 45 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 46 H 0.11 1.64 6.40 -2.39 -0.02 1.63 16 47 H 0.04 1.32 8.01 -2.39 -0.02 1.30 16 Total: -1.00 -99.33 392.50 4.22 -95.11 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 0.97 Total: 2.34 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.16 Total: 8.40 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -4.89 Total: -124.88 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -99.33 4.22 -95.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274818367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.584 kcal (2) G-P(sol) polarization free energy of solvation -99.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds