Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39807 * 120.07299 * 70.47384 * 3 2 1 5 5 C 1.37652 * 119.92304 * 179.97438 * 4 3 2 6 6 C 1.39177 * 120.07548 * 359.97438 * 5 4 3 7 7 N 1.39181 * 119.92373 * 180.02562 * 6 5 4 8 8 C 1.48060 * 111.00383 * 14.73829 * 7 6 5 9 9 C 1.54253 * 106.83313 * 146.61047 * 8 7 6 10 10 C 1.54355 * 104.83026 * 358.55012 * 9 8 7 11 11 H 1.09001 * 110.89102 * 95.05720 * 10 9 8 12 12 C 1.48921 * 111.00202 * 131.76549 * 7 6 5 13 13 H 1.08996 * 112.07886 * 78.73814 * 12 7 6 14 14 C 1.53109 * 107.98465 * 314.48418 * 12 7 6 15 15 C 1.52917 * 109.19532 * 184.13881 * 14 12 7 16 16 C 1.50305 * 109.42614 * 52.10904 * 15 14 12 17 17 O 1.21283 * 118.67918 * 159.20091 * 16 15 14 18 18 N 1.33324 * 122.64601 * 339.22235 * 16 15 14 19 19 C 1.46502 * 117.36696 * 180.25236 * 18 16 15 20 20 C 1.53000 * 109.46662 * 269.97883 * 19 18 16 21 21 C 1.50707 * 109.46835 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99997 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99962 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99955 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99993 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47174 * 59.99883 * 25 23 21 27 27 H 1.48505 * 109.47048 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46780 * 299.99816 * 25 23 21 29 29 C 1.39170 * 120.14839 * 0.04740 * 6 5 4 30 30 C 1.37650 * 120.08173 * 359.97364 * 29 6 5 31 31 H 1.08006 * 120.03617 * 0.27449 * 4 3 2 32 32 H 1.08002 * 119.95967 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.98830 * 265.96131 * 8 7 6 34 34 H 1.08995 * 109.98143 * 27.26607 * 8 7 6 35 35 H 1.09002 * 110.36656 * 239.70639 * 9 8 7 36 36 H 1.08999 * 110.36665 * 117.39012 * 9 8 7 37 37 H 1.09009 * 109.51654 * 304.05224 * 14 12 7 38 38 H 1.08993 * 109.51882 * 64.22144 * 14 12 7 39 39 H 1.08999 * 109.46231 * 292.13062 * 15 14 12 40 40 H 1.08996 * 109.48924 * 172.10299 * 15 14 12 41 41 H 1.08998 * 109.47092 * 29.97690 * 19 18 16 42 42 H 1.08993 * 109.47173 * 149.97884 * 19 18 16 43 43 H 1.08995 * 109.47368 * 299.99235 * 20 19 18 44 44 H 1.09000 * 109.47692 * 60.00159 * 20 19 18 45 45 H 0.97005 * 120.00102 * 179.97438 * 24 23 21 46 46 H 1.08004 * 119.96024 * 179.97438 * 29 6 5 47 47 H 1.07997 * 120.04026 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.4034 -1.1403 5 6 4.6453 -0.4011 -1.1371 6 6 5.3394 0.0034 -0.0006 7 7 6.7312 0.0050 -0.0010 8 6 7.2616 -0.1104 -1.3785 9 6 8.5716 0.7029 -1.4223 10 6 8.7127 1.3013 -0.0065 11 1 9.3439 0.6717 0.6205 12 6 7.2636 1.2927 0.5245 13 1 7.2265 1.3377 1.6129 14 6 6.4789 2.4318 -0.1321 15 6 7.0716 3.7704 0.3095 16 6 8.5544 3.7660 0.0636 17 8 9.1343 4.8283 -0.0162 18 7 9.2578 2.6415 -0.0709 19 6 10.6986 2.7719 -0.3019 20 6 10.9695 2.8427 -1.8061 21 6 12.4516 2.9774 -2.0437 22 1 13.1322 3.0090 -1.2058 23 6 12.9387 3.0594 -3.3309 24 7 12.1099 3.0205 -4.3514 25 14 14.7758 3.2257 -3.6256 26 1 15.4777 2.0503 -3.0505 27 1 15.0387 3.2946 -5.0855 28 1 15.2711 4.4653 -2.9749 29 6 4.6449 0.4058 1.1363 30 6 3.2684 0.4055 1.1402 31 1 2.7306 -0.7124 -2.0243 32 1 5.1872 -0.7135 -2.0175 33 1 7.4637 -1.1553 -1.6136 34 1 6.5444 0.2999 -2.0894 35 1 8.5001 1.4977 -2.1648 36 1 9.4160 0.0503 -1.6442 37 1 6.5470 2.3433 -1.2164 38 1 5.4341 2.3776 0.1736 39 1 6.8798 3.9198 1.3720 40 1 6.6111 4.5776 -0.2601 41 1 11.0623 3.6815 0.1760 42 1 11.2138 1.9089 0.1199 43 1 10.6058 1.9330 -2.2839 44 1 10.4543 3.7057 -2.2279 45 1 12.4525 3.0785 -5.2570 46 1 5.1867 0.7187 2.0167 47 1 2.7302 0.7175 2.0230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274821281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 39.814372 kcal Electronic energy + Delta-G solvation = -29476.472485 eV Core-core repulsion = 25624.431194 eV Total energy + Delta-G solvation = -3852.041291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74021 -39.83295 -38.30348 -36.61320 -35.36208 -33.96517 -32.92482 -32.09966 -31.55629 -29.59482 -29.01303 -28.20182 -25.16777 -24.24701 -23.56540 -23.36513 -21.83428 -20.98087 -20.63729 -19.23526 -18.14502 -17.33772 -16.72423 -16.45662 -16.14922 -15.64768 -15.36151 -15.13113 -14.97284 -14.53545 -14.38234 -14.24641 -14.03794 -13.84996 -13.59226 -13.35461 -13.22171 -12.83539 -12.62151 -12.56708 -12.46494 -12.36422 -12.06309 -11.95499 -11.86424 -11.55136 -11.43658 -11.25453 -10.98003 -10.91061 -10.79296 -10.64442 -10.06631 -9.87817 -9.87216 -9.46977 -9.37729 -9.07151 -8.37249 -8.23157 -8.15583 -6.03890 -4.06226 0.42757 0.95518 2.40025 2.55464 2.97481 3.18499 3.31556 3.36121 3.38615 3.50013 3.61045 3.69674 4.12281 4.22139 4.43910 4.45658 4.49313 4.62691 4.66064 4.83513 4.91737 4.97243 4.99040 5.05903 5.14567 5.23296 5.30110 5.32915 5.48907 5.52967 5.57359 5.63764 5.67501 5.71508 5.74113 5.89837 5.95063 6.06433 6.11545 6.18040 6.23072 6.45525 6.52524 6.72415 6.82808 6.87078 7.22227 7.59231 7.69826 7.96192 7.97455 8.34019 8.58979 8.99887 9.57524 11.07447 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002577 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.153120 B =10862.085796 C =11437.191418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.260 3.740 3 C -0.070 4.070 4 C -0.037 4.037 5 C -0.174 4.174 6 C 0.152 3.848 7 N -0.464 5.464 8 C 0.028 3.972 9 C -0.144 4.144 10 C 0.151 3.849 11 H 0.097 0.903 12 C 0.064 3.936 13 H 0.113 0.887 14 C -0.151 4.151 15 C -0.130 4.130 16 C 0.510 3.490 17 O -0.543 6.543 18 N -0.592 5.592 19 C 0.108 3.892 20 C 0.014 3.986 21 C -0.520 4.520 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.276 1.276 29 C -0.151 4.151 30 C -0.042 4.042 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.136 0.864 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.027 -8.858 10.043 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.054 4.054 3 C -0.075 4.075 4 C -0.058 4.058 5 C -0.194 4.194 6 C 0.051 3.949 7 N -0.176 5.176 8 C -0.098 4.098 9 C -0.183 4.183 10 C 0.045 3.955 11 H 0.115 0.885 12 C -0.041 4.041 13 H 0.131 0.869 14 C -0.190 4.190 15 C -0.170 4.170 16 C 0.297 3.703 17 O -0.421 6.421 18 N -0.323 5.323 19 C -0.013 4.013 20 C -0.023 4.023 21 C -0.559 4.559 22 H 0.073 0.927 23 C -0.142 4.142 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 C -0.171 4.171 30 C -0.063 4.063 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.154 0.846 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.237 -8.738 10.135 21.821 hybrid contribution 1.193 0.421 -0.784 1.489 sum -16.044 -8.316 9.351 20.347 Atomic orbital electron populations 1.81260 1.12199 1.09530 1.07649 1.25752 0.92681 0.93359 0.93646 1.15939 0.84174 1.10367 0.96988 1.21009 0.93740 0.94637 0.96418 1.21175 0.93906 1.06316 0.98034 1.19286 0.88859 0.93352 0.93432 1.61632 1.04650 1.30891 1.20399 1.23325 0.96779 1.02303 0.87395 1.23025 0.96995 1.00466 0.97780 1.21372 0.93039 0.84343 0.96707 0.88537 1.23212 0.94120 0.86191 1.00622 0.86902 1.22295 1.00509 0.94103 1.02046 1.21562 0.92843 0.98741 1.03896 1.19969 0.89409 0.83762 0.77143 1.90752 1.70945 1.29792 1.50580 1.47198 1.10691 1.04233 1.70169 1.21977 0.76559 1.01536 1.01235 1.19408 0.96739 0.97670 0.88531 1.21064 0.92133 1.50579 0.92101 0.92676 1.24973 0.97816 0.95212 0.96209 1.69952 1.34359 1.50467 0.98539 0.86644 0.85545 0.78728 0.77001 1.20225 1.21320 1.20191 1.20759 0.93497 1.04699 0.98148 1.20981 0.93684 0.95213 0.96440 0.84993 0.84106 0.88985 0.91335 0.89250 0.89268 0.90417 0.89765 0.88587 0.88173 0.90577 0.91928 0.96065 0.96207 0.92954 0.84626 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.07 18.54 41.84 0.78 -4.30 16 2 C 0.26 2.42 15.33 -22.47 -0.34 2.07 16 3 C -0.07 -0.51 5.74 -106.80 -0.61 -1.12 16 4 C -0.04 -0.24 9.75 -39.21 -0.38 -0.62 16 5 C -0.17 -1.19 8.67 -39.45 -0.34 -1.53 16 6 C 0.15 1.13 4.40 -83.83 -0.37 0.76 16 7 N -0.46 -3.87 5.35 -159.48 -0.85 -4.73 16 8 C 0.03 0.25 4.88 -2.53 -0.01 0.24 16 9 C -0.14 -1.74 4.55 -25.37 -0.12 -1.86 16 10 C 0.15 1.80 3.19 -67.42 -0.22 1.59 16 11 H 0.10 1.09 8.00 -51.93 -0.42 0.68 16 12 C 0.06 0.57 2.74 -65.84 -0.18 0.39 16 13 H 0.11 0.85 7.58 -51.93 -0.39 0.45 16 14 C -0.15 -1.38 4.37 -26.72 -0.12 -1.49 16 15 C -0.13 -1.45 6.07 -28.12 -0.17 -1.62 16 16 C 0.51 8.48 7.47 -11.82 -0.09 8.39 16 17 O -0.54 -11.81 16.20 5.55 0.09 -11.72 16 18 N -0.59 -9.41 2.46 -166.30 -0.41 -9.82 16 19 C 0.11 2.14 5.06 -4.04 -0.02 2.12 16 20 C 0.01 0.35 5.00 -27.88 -0.14 0.21 16 21 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 22 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 25 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C -0.15 -0.96 7.67 -39.45 -0.30 -1.26 16 30 C -0.04 -0.26 9.75 -39.21 -0.38 -0.64 16 31 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 32 H 0.14 0.84 5.95 -52.49 -0.31 0.53 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.56 5.62 -51.93 -0.29 0.26 16 35 H 0.09 1.33 7.41 -51.93 -0.38 0.95 16 36 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.08 0.82 6.57 -51.92 -0.34 0.47 16 38 H 0.08 0.63 5.87 -51.93 -0.30 0.33 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.66 7.14 -51.93 -0.37 1.29 16 42 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 43 H 0.02 0.52 6.29 -51.93 -0.33 0.20 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.14 0.70 7.23 -52.48 -0.38 0.32 16 47 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -33.54 374.26 -9.67 -43.21 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.43 Total: -1.68 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.20 Total: -7.41 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.25 Total: -44.36 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.54 -9.67 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274821281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.026 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds