Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39807 * 120.07299 * 70.47384 * 3 2 1 5 5 C 1.37652 * 119.92304 * 179.97438 * 4 3 2 6 6 C 1.39177 * 120.07548 * 359.97438 * 5 4 3 7 7 N 1.39181 * 119.92373 * 180.02562 * 6 5 4 8 8 C 1.48060 * 111.00383 * 14.73829 * 7 6 5 9 9 C 1.54253 * 106.83313 * 146.61047 * 8 7 6 10 10 C 1.54355 * 104.83026 * 358.55012 * 9 8 7 11 11 H 1.09001 * 110.89102 * 95.05720 * 10 9 8 12 12 C 1.48921 * 111.00202 * 131.76549 * 7 6 5 13 13 H 1.08996 * 112.07886 * 78.73814 * 12 7 6 14 14 C 1.53109 * 107.98465 * 314.48418 * 12 7 6 15 15 C 1.52917 * 109.19532 * 184.13881 * 14 12 7 16 16 C 1.50305 * 109.42614 * 52.10904 * 15 14 12 17 17 O 1.21283 * 118.67918 * 159.20091 * 16 15 14 18 18 N 1.33324 * 122.64601 * 339.22235 * 16 15 14 19 19 C 1.46502 * 117.36696 * 180.25236 * 18 16 15 20 20 C 1.53000 * 109.46662 * 269.97883 * 19 18 16 21 21 C 1.50707 * 109.46835 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99997 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99962 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99955 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99993 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47174 * 59.99883 * 25 23 21 27 27 H 1.48505 * 109.47048 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46780 * 299.99816 * 25 23 21 29 29 C 1.39170 * 120.14839 * 0.04740 * 6 5 4 30 30 C 1.37650 * 120.08173 * 359.97364 * 29 6 5 31 31 H 1.08006 * 120.03617 * 0.27449 * 4 3 2 32 32 H 1.08002 * 119.95967 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.98830 * 265.96131 * 8 7 6 34 34 H 1.08995 * 109.98143 * 27.26607 * 8 7 6 35 35 H 1.09002 * 110.36656 * 239.70639 * 9 8 7 36 36 H 1.08999 * 110.36665 * 117.39012 * 9 8 7 37 37 H 1.09009 * 109.51654 * 304.05224 * 14 12 7 38 38 H 1.08993 * 109.51882 * 64.22144 * 14 12 7 39 39 H 1.08999 * 109.46231 * 292.13062 * 15 14 12 40 40 H 1.08996 * 109.48924 * 172.10299 * 15 14 12 41 41 H 1.08998 * 109.47092 * 29.97690 * 19 18 16 42 42 H 1.08993 * 109.47173 * 149.97884 * 19 18 16 43 43 H 1.08995 * 109.47368 * 299.99235 * 20 19 18 44 44 H 1.09000 * 109.47692 * 60.00159 * 20 19 18 45 45 H 0.97005 * 120.00102 * 179.97438 * 24 23 21 46 46 H 1.08004 * 119.96024 * 179.97438 * 29 6 5 47 47 H 1.07997 * 120.04026 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.4034 -1.1403 5 6 4.6453 -0.4011 -1.1371 6 6 5.3394 0.0034 -0.0006 7 7 6.7312 0.0050 -0.0010 8 6 7.2616 -0.1104 -1.3785 9 6 8.5716 0.7029 -1.4223 10 6 8.7127 1.3013 -0.0065 11 1 9.3439 0.6717 0.6205 12 6 7.2636 1.2927 0.5245 13 1 7.2265 1.3377 1.6129 14 6 6.4789 2.4318 -0.1321 15 6 7.0716 3.7704 0.3095 16 6 8.5544 3.7660 0.0636 17 8 9.1343 4.8283 -0.0162 18 7 9.2578 2.6415 -0.0709 19 6 10.6986 2.7719 -0.3019 20 6 10.9695 2.8427 -1.8061 21 6 12.4516 2.9774 -2.0437 22 1 13.1322 3.0090 -1.2058 23 6 12.9387 3.0594 -3.3309 24 7 12.1099 3.0205 -4.3514 25 14 14.7758 3.2257 -3.6256 26 1 15.4777 2.0503 -3.0505 27 1 15.0387 3.2946 -5.0855 28 1 15.2711 4.4653 -2.9749 29 6 4.6449 0.4058 1.1363 30 6 3.2684 0.4055 1.1402 31 1 2.7306 -0.7124 -2.0243 32 1 5.1872 -0.7135 -2.0175 33 1 7.4637 -1.1553 -1.6136 34 1 6.5444 0.2999 -2.0894 35 1 8.5001 1.4977 -2.1648 36 1 9.4160 0.0503 -1.6442 37 1 6.5470 2.3433 -1.2164 38 1 5.4341 2.3776 0.1736 39 1 6.8798 3.9198 1.3720 40 1 6.6111 4.5776 -0.2601 41 1 11.0623 3.6815 0.1760 42 1 11.2138 1.9089 0.1199 43 1 10.6058 1.9330 -2.2839 44 1 10.4543 3.7057 -2.2279 45 1 12.4525 3.0785 -5.2570 46 1 5.1867 0.7187 2.0167 47 1 2.7302 0.7175 2.0230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274821281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = 19.225165 kcal Electronic energy + Delta-G solvation = -29477.365300 eV Core-core repulsion = 25624.431194 eV Total energy + Delta-G solvation = -3852.934106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.58900 -40.80958 -39.17846 -37.48266 -36.65845 -35.32298 -34.42716 -33.08989 -32.10751 -31.28455 -29.77626 -29.09646 -26.92189 -25.18399 -24.43815 -24.05878 -23.29774 -21.93283 -21.70432 -19.81015 -19.14949 -18.56306 -18.17565 -17.65056 -17.35462 -16.60717 -16.42934 -16.30103 -16.06624 -15.58622 -15.26381 -15.06272 -14.81022 -14.65202 -14.53901 -14.52328 -14.30755 -14.18332 -13.93221 -13.61820 -13.45550 -13.21435 -13.14211 -12.98709 -12.84390 -12.80084 -12.70062 -12.52295 -12.47176 -12.05373 -11.84690 -11.78015 -11.69794 -11.56474 -11.34213 -10.70358 -10.56376 -10.53515 -9.91225 -9.61020 -8.83675 -8.20626 -6.31442 -0.13737 0.49254 1.39543 1.43109 1.50274 1.67543 1.69988 1.90332 2.09692 2.41962 2.73358 2.99417 3.06226 3.13137 3.28602 3.45736 3.67279 3.77071 3.99991 4.01474 4.08234 4.10451 4.16987 4.31338 4.32832 4.43221 4.44877 4.54627 4.67198 4.72986 4.74476 4.81125 4.86911 4.88898 4.98769 4.99531 5.05724 5.07780 5.17610 5.20520 5.27995 5.37842 5.46317 5.52083 5.64710 5.68196 5.82112 5.85976 6.20585 6.22318 6.54313 6.63893 6.83870 7.27255 7.37300 8.90833 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002577 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.153120 B =10862.085796 C =11437.191418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.284 3.716 3 C -0.078 4.078 4 C -0.035 4.035 5 C -0.177 4.177 6 C 0.141 3.859 7 N -0.458 5.458 8 C 0.037 3.963 9 C -0.143 4.143 10 C 0.141 3.859 11 H 0.110 0.890 12 C 0.075 3.925 13 H 0.142 0.858 14 C -0.143 4.143 15 C -0.118 4.118 16 C 0.498 3.502 17 O -0.606 6.606 18 N -0.587 5.587 19 C 0.122 3.878 20 C 0.028 3.972 21 C -0.543 4.543 22 H 0.061 0.939 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.963 3.037 26 H -0.260 1.260 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.147 4.147 30 C -0.034 4.034 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.015 0.985 44 H -0.031 1.031 45 H 0.263 0.737 46 H 0.156 0.844 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.656 -10.348 11.890 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.030 4.030 3 C -0.083 4.083 4 C -0.056 4.056 5 C -0.198 4.198 6 C 0.040 3.960 7 N -0.171 5.171 8 C -0.089 4.089 9 C -0.182 4.182 10 C 0.037 3.963 11 H 0.127 0.873 12 C -0.030 4.030 13 H 0.160 0.840 14 C -0.181 4.181 15 C -0.158 4.158 16 C 0.289 3.711 17 O -0.488 6.488 18 N -0.317 5.317 19 C -0.001 4.001 20 C -0.010 4.010 21 C -0.581 4.581 22 H 0.079 0.921 23 C -0.195 4.195 24 N -0.571 5.571 25 Si 0.788 3.212 26 H -0.185 1.185 27 H -0.209 1.209 28 H -0.199 1.199 29 C -0.167 4.167 30 C -0.055 4.055 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.033 0.967 44 H -0.013 1.013 45 H 0.072 0.928 46 H 0.174 0.826 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.901 -10.277 12.000 23.876 hybrid contribution 1.387 0.875 -1.406 2.160 sum -16.513 -9.402 10.594 21.756 Atomic orbital electron populations 1.81286 1.13711 1.11478 1.09316 1.26033 0.92904 0.91897 0.92166 1.16055 0.83009 1.11321 0.97920 1.21132 0.93704 0.94092 0.96679 1.21274 0.94013 1.06198 0.98274 1.19406 0.88240 0.94135 0.94210 1.61703 1.05403 1.30314 1.19631 1.23240 0.94950 1.02333 0.88351 1.22881 0.98687 0.99590 0.97042 1.21690 0.95626 0.82039 0.96977 0.87257 1.23223 0.91327 0.86472 1.02002 0.84018 1.22268 1.01897 0.92875 1.01080 1.21562 0.88090 1.00099 1.06062 1.21087 0.91703 0.82759 0.75580 1.90719 1.72639 1.32019 1.53387 1.47182 1.09049 1.06113 1.69324 1.21500 0.79750 1.01312 0.97490 1.19194 0.95125 0.94930 0.91702 1.21547 0.93586 1.50397 0.92588 0.92082 1.25922 1.02925 0.94717 0.95974 1.70090 1.36622 1.51365 0.98981 0.85528 0.79504 0.79196 0.76991 1.18460 1.20918 1.19851 1.20952 0.93473 1.03994 0.98259 1.21182 0.93718 0.94129 0.96517 0.83894 0.83517 0.87686 0.90577 0.92942 0.90640 0.92161 0.86912 0.85194 0.88180 0.92962 0.89697 0.96665 1.01258 0.92842 0.82649 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.93 18.54 19.00 0.35 -10.58 16 2 C 0.28 4.76 15.33 88.33 1.35 6.12 16 3 C -0.08 -0.90 5.74 -21.27 -0.12 -1.03 16 4 C -0.03 -0.36 9.75 22.51 0.22 -0.14 16 5 C -0.18 -1.90 8.67 22.36 0.19 -1.70 16 6 C 0.14 1.57 4.40 38.42 0.17 1.74 16 7 N -0.46 -6.15 5.35 -658.48 -3.52 -9.68 16 8 C 0.04 0.60 4.88 86.50 0.42 1.02 16 9 C -0.14 -3.49 4.55 31.48 0.14 -3.35 16 10 C 0.14 3.21 3.19 46.22 0.15 3.35 16 11 H 0.11 2.25 8.00 -2.39 -0.02 2.23 16 12 C 0.08 1.10 2.74 45.01 0.12 1.22 16 13 H 0.14 1.38 7.58 -2.39 -0.02 1.36 16 14 C -0.14 -2.21 4.37 30.60 0.13 -2.07 16 15 C -0.12 -2.42 6.07 29.70 0.18 -2.24 16 16 C 0.50 16.86 7.47 87.76 0.66 17.52 16 17 O -0.61 -27.69 16.20 -3.04 -0.05 -27.74 16 18 N -0.59 -18.95 2.46 -799.26 -1.96 -20.92 16 19 C 0.12 5.04 5.06 86.38 0.44 5.48 16 20 C 0.03 1.49 5.00 29.85 0.15 1.63 16 21 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 22 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 23 C 0.00 0.15 5.46 84.65 0.46 0.62 16 24 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 25 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 C -0.15 -1.19 7.67 22.35 0.17 -1.02 16 30 C -0.03 -0.28 9.75 22.51 0.22 -0.06 16 31 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.15 1.37 5.95 -2.91 -0.02 1.36 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.12 5.62 -2.39 -0.01 1.10 16 35 H 0.05 1.67 7.41 -2.39 -0.02 1.65 16 36 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 37 H 0.06 1.18 6.57 -2.38 -0.02 1.16 16 38 H 0.11 1.18 5.87 -2.39 -0.01 1.17 16 39 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 2.40 7.14 -2.39 -0.02 2.38 16 42 H 0.08 3.09 7.90 -2.39 -0.02 3.07 16 43 H 0.02 0.80 6.29 -2.39 -0.02 0.78 16 44 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 45 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 46 H 0.16 0.70 7.23 -2.91 -0.02 0.68 16 47 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -78.23 374.26 3.42 -74.81 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.00 Total: 7.50 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.29 Total: -3.47 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -4.85 Total: -97.35 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.23 3.42 -74.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274821281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.037 kcal (2) G-P(sol) polarization free energy of solvation -78.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds