Wall clock time and date at job start Sat Apr 11 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39804 * 120.08029 * 331.65914 * 3 2 1 5 5 C 1.37652 * 119.92723 * 179.97438 * 4 3 2 6 6 C 1.39175 * 120.07076 * 359.97438 * 5 4 3 7 7 N 1.39191 * 119.91748 * 180.02562 * 6 5 4 8 8 C 1.48722 * 111.00207 * 3.13336 * 7 6 5 9 9 C 1.55009 * 103.35159 * 158.81853 * 8 7 6 10 10 C 1.54799 * 102.94173 * 323.04072 * 9 8 7 11 11 C 1.47084 * 110.99586 * 120.28997 * 7 6 5 12 12 C 1.53867 * 110.71336 * 93.71741 * 11 7 6 13 13 C 1.54822 * 101.50796 * 215.39014 * 12 11 7 14 14 N 1.46858 * 105.41469 * 25.09264 * 13 12 11 15 15 C 1.46497 * 124.36681 * 163.00267 * 14 13 12 16 16 C 1.52999 * 109.47146 * 274.76200 * 15 14 13 17 17 C 1.50697 * 109.47298 * 177.29792 * 16 15 14 18 18 H 1.08002 * 120.00078 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00100 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46955 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47152 * 119.99725 * 21 19 17 24 24 H 1.48498 * 109.47005 * 239.99957 * 21 19 17 25 25 C 1.34665 * 111.26299 * 342.74057 * 14 13 12 26 26 O 1.21283 * 125.07851 * 181.16126 * 25 14 13 27 27 C 1.39167 * 120.15356 * 0.28961 * 6 5 4 28 28 C 1.37651 * 120.07806 * 359.45469 * 27 6 5 29 29 H 1.08003 * 120.03227 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.95798 * 180.02562 * 5 4 3 31 31 H 1.09004 * 110.64609 * 40.35333 * 8 7 6 32 32 H 1.08999 * 110.78207 * 277.34785 * 8 7 6 33 33 H 1.08998 * 110.72147 * 204.67634 * 9 8 7 34 34 H 1.08994 * 110.87148 * 81.47536 * 9 8 7 35 35 H 1.09001 * 110.37289 * 263.05957 * 10 9 8 36 36 H 1.08998 * 110.46440 * 140.77176 * 10 9 8 37 37 H 1.09005 * 110.99771 * 333.67838 * 12 11 7 38 38 H 1.08999 * 110.99894 * 97.48732 * 12 11 7 39 39 H 1.09006 * 110.39162 * 266.06001 * 13 12 11 40 40 H 1.08995 * 110.17712 * 144.01963 * 13 12 11 41 41 H 1.09004 * 109.47346 * 34.76213 * 15 14 13 42 42 H 1.08999 * 109.46985 * 154.76124 * 15 14 13 43 43 H 1.09003 * 109.46954 * 297.29961 * 16 15 14 44 44 H 1.08997 * 109.47209 * 57.29819 * 16 15 14 45 45 H 0.97002 * 120.00143 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.96480 * 179.73034 * 27 6 5 47 47 H 1.08001 * 120.04254 * 180.29505 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.0638 0.5743 5 6 4.6458 -1.0602 0.5721 6 6 5.3394 0.0013 -0.0015 7 7 6.7313 0.0014 -0.0025 8 6 7.2649 -1.2545 0.5891 9 6 8.7056 -1.3331 0.0227 10 6 8.5429 -0.7857 -1.4161 11 6 7.2574 0.0475 -1.3752 12 6 7.5391 1.4989 -1.8016 13 6 7.1642 1.4580 -3.3032 14 7 6.2019 0.3565 -3.4354 15 6 5.3126 0.1688 -4.5843 16 6 4.0440 1.0015 -4.3888 17 6 3.1589 0.8607 -5.6003 18 1 3.4702 0.2396 -6.4272 19 6 1.9517 1.5246 -5.6530 20 7 1.5724 2.2804 -4.6459 21 14 0.8542 1.3494 -7.1545 22 1 1.5043 0.4491 -8.1405 23 1 -0.4538 0.7762 -6.7474 24 1 0.6400 2.6840 -7.7695 25 6 6.2464 -0.4618 -2.3668 26 8 5.5730 -1.4605 -2.2251 27 6 4.6446 1.0651 -0.5692 28 6 3.2681 1.0655 -0.5751 29 1 2.7314 -1.8884 1.0184 30 1 5.1879 -1.8824 1.0152 31 1 6.6768 -2.1127 0.2637 32 1 7.2825 -1.1925 1.6771 33 1 9.0575 -2.3645 0.0055 34 1 9.3845 -0.7052 0.5997 35 1 8.4403 -1.6071 -2.1252 36 1 9.3932 -0.1584 -1.6836 37 1 6.9045 2.1967 -1.2552 38 1 8.5924 1.7470 -1.6705 39 1 8.0480 1.2614 -3.9101 40 1 6.7030 2.3995 -3.6013 41 1 5.8211 0.4893 -5.4936 42 1 5.0461 -0.8847 -4.6692 43 1 3.5105 0.6491 -3.5060 44 1 4.3140 2.0491 -4.2560 45 1 0.7232 2.7478 -4.6832 46 1 5.1860 1.8894 -1.0096 47 1 2.7295 1.8891 -1.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274821944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:23 Heat of formation + Delta-G solvation = 47.069398 kcal Electronic energy + Delta-G solvation = -30836.113407 eV Core-core repulsion = 26984.386718 eV Total energy + Delta-G solvation = -3851.726689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77979 -38.98121 -37.61660 -36.18787 -35.85009 -33.71297 -32.84005 -32.04955 -30.88413 -29.12396 -28.80314 -27.85846 -25.15610 -24.16536 -23.28131 -22.63727 -21.86810 -20.84210 -20.32959 -18.90886 -18.62979 -17.23721 -16.80478 -16.07667 -15.52669 -15.38579 -15.25414 -14.79475 -14.55592 -14.38256 -14.02161 -13.87484 -13.62930 -13.49292 -13.25021 -13.02982 -12.88762 -12.74164 -12.51009 -12.30911 -12.16777 -12.15217 -11.96291 -11.79003 -11.50786 -11.40550 -11.27919 -11.19627 -10.98019 -10.87347 -10.72063 -10.57335 -10.08453 -9.96844 -9.91547 -9.30777 -9.07343 -8.78294 -8.38620 -8.10135 -7.78870 -6.04916 -4.07413 1.02146 1.61420 2.79760 3.06384 3.19983 3.29606 3.37144 3.39802 3.46124 3.70980 4.12765 4.25331 4.30547 4.36704 4.43603 4.45826 4.74176 4.88575 4.97052 4.98462 5.00340 5.13097 5.28801 5.32544 5.45461 5.46377 5.53949 5.59172 5.61971 5.69294 5.71956 5.80583 5.82366 5.90664 5.98057 6.01234 6.13170 6.26819 6.30807 6.41556 6.61625 6.69445 6.76060 6.86426 6.91616 7.24174 7.42460 7.63193 7.79927 7.88226 7.94242 8.30771 8.55185 8.98363 9.57049 11.06172 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.004914 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.004918 B = 5696.838689 C = 7643.938136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.264 3.736 3 C -0.052 4.052 4 C -0.047 4.047 5 C -0.153 4.153 6 C 0.131 3.869 7 N -0.446 5.446 8 C 0.025 3.975 9 C -0.120 4.120 10 C -0.109 4.109 11 C 0.063 3.937 12 C -0.119 4.119 13 C 0.097 3.903 14 N -0.604 5.604 15 C 0.127 3.873 16 C 0.016 3.984 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.504 3.496 26 O -0.519 6.519 27 C -0.135 4.135 28 C -0.027 4.027 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.132 0.868 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.324 -3.151 11.544 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.050 4.050 3 C -0.057 4.057 4 C -0.068 4.068 5 C -0.173 4.173 6 C 0.033 3.967 7 N -0.161 5.161 8 C -0.101 4.101 9 C -0.158 4.158 10 C -0.148 4.148 11 C -0.029 4.029 12 C -0.157 4.157 13 C -0.027 4.027 14 N -0.337 5.337 15 C 0.007 3.993 16 C -0.022 4.022 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.288 3.712 26 O -0.395 6.395 27 C -0.155 4.155 28 C -0.049 4.049 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.150 0.850 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.231 -3.123 11.872 20.350 hybrid contribution -0.611 -0.490 -1.431 1.631 sum 15.621 -3.613 10.441 19.133 Atomic orbital electron populations 1.81174 1.12197 1.07993 1.09317 1.25685 0.92687 0.93491 0.93185 1.15972 0.84314 0.98577 1.06796 1.20877 0.93752 0.96025 0.96133 1.21005 0.93902 0.97590 1.04798 1.19053 0.88306 0.93664 0.95685 1.61816 1.05547 1.34964 1.13809 1.23582 0.95182 0.91008 1.00352 1.22532 0.96461 1.01643 0.95209 1.22297 0.94928 0.99306 0.98235 1.22224 0.95462 0.97867 0.87299 1.22829 1.03308 0.94559 0.94975 1.22179 0.92606 0.91922 0.95974 1.48552 1.38254 1.26280 1.20607 1.21836 0.91232 1.01716 0.84557 1.19372 0.90408 0.94615 0.97808 1.21092 1.03397 1.28966 1.02722 0.92619 1.24939 0.97693 0.95145 0.96154 1.69940 1.21856 1.30369 1.30595 0.86570 0.80757 0.77841 0.83060 1.19700 1.20987 1.20977 1.20703 0.83343 0.83691 0.83482 1.90727 1.45712 1.25577 1.77456 1.20771 0.93712 0.98668 1.02351 1.21111 0.93765 0.96775 0.93203 0.85459 0.84933 0.91004 0.89066 0.90423 0.90278 0.90704 0.89630 0.88933 0.88943 0.91319 0.89713 0.91776 0.91125 0.95878 0.96539 0.93022 0.85021 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.80 18.54 41.84 0.78 -8.02 16 2 C 0.26 4.91 15.33 -22.47 -0.34 4.57 16 3 C -0.05 -0.88 5.74 -106.80 -0.61 -1.49 16 4 C -0.05 -0.67 9.75 -39.21 -0.38 -1.05 16 5 C -0.15 -2.08 8.24 -39.45 -0.33 -2.41 16 6 C 0.13 1.88 3.72 -83.83 -0.31 1.56 16 7 N -0.45 -5.35 4.97 -154.23 -0.77 -6.11 16 8 C 0.03 0.24 5.36 -1.75 -0.01 0.23 16 9 C -0.12 -0.93 7.08 -24.72 -0.17 -1.11 16 10 C -0.11 -1.02 6.24 -25.66 -0.16 -1.18 16 11 C 0.06 0.75 0.64 -132.17 -0.08 0.67 16 12 C -0.12 -1.20 5.87 -25.32 -0.15 -1.35 16 13 C 0.10 1.17 7.37 -2.89 -0.02 1.15 16 14 N -0.60 -9.95 2.94 -172.39 -0.51 -10.46 16 15 C 0.13 2.54 5.93 -4.04 -0.02 2.52 16 16 C 0.02 0.39 5.30 -27.89 -0.15 0.24 16 17 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.50 8.32 4.52 -11.14 -0.05 8.27 16 26 O -0.52 -10.46 15.84 5.55 0.09 -10.37 16 27 C -0.14 -2.12 8.13 -39.45 -0.32 -2.44 16 28 C -0.03 -0.47 9.75 -39.21 -0.38 -0.85 16 29 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.13 1.49 5.72 -52.49 -0.30 1.19 16 31 H 0.07 0.80 6.23 -51.93 -0.32 0.47 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 36 H 0.09 0.61 7.29 -51.93 -0.38 0.23 16 37 H 0.09 0.99 6.03 -51.93 -0.31 0.67 16 38 H 0.09 0.67 7.41 -51.93 -0.39 0.28 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.53 7.82 -51.93 -0.41 1.13 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.13 1.96 5.55 -52.48 -0.29 1.67 16 47 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -33.72 381.03 -9.43 -43.15 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.57 Total: 0.50 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -3.91 Total: -5.73 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.24 Total: -50.03 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.72 -9.43 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274821944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.217 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds