Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39804 * 120.08029 * 331.65914 * 3 2 1 5 5 C 1.37652 * 119.92723 * 179.97438 * 4 3 2 6 6 C 1.39175 * 120.07076 * 359.97438 * 5 4 3 7 7 N 1.39191 * 119.91748 * 180.02562 * 6 5 4 8 8 C 1.48722 * 111.00207 * 3.13336 * 7 6 5 9 9 C 1.55009 * 103.35159 * 158.81853 * 8 7 6 10 10 C 1.54799 * 102.94173 * 323.04072 * 9 8 7 11 11 C 1.47084 * 110.99586 * 120.28997 * 7 6 5 12 12 C 1.53867 * 110.71336 * 93.71741 * 11 7 6 13 13 C 1.54822 * 101.50796 * 215.39014 * 12 11 7 14 14 N 1.46858 * 105.41469 * 25.09264 * 13 12 11 15 15 C 1.46497 * 124.36681 * 163.00267 * 14 13 12 16 16 C 1.52999 * 109.47146 * 274.76200 * 15 14 13 17 17 C 1.50697 * 109.47298 * 177.29792 * 16 15 14 18 18 H 1.08002 * 120.00078 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00100 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46955 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47152 * 119.99725 * 21 19 17 24 24 H 1.48498 * 109.47005 * 239.99957 * 21 19 17 25 25 C 1.34665 * 111.26299 * 342.74057 * 14 13 12 26 26 O 1.21283 * 125.07851 * 181.16126 * 25 14 13 27 27 C 1.39167 * 120.15356 * 0.28961 * 6 5 4 28 28 C 1.37651 * 120.07806 * 359.45469 * 27 6 5 29 29 H 1.08003 * 120.03227 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.95798 * 180.02562 * 5 4 3 31 31 H 1.09004 * 110.64609 * 40.35333 * 8 7 6 32 32 H 1.08999 * 110.78207 * 277.34785 * 8 7 6 33 33 H 1.08998 * 110.72147 * 204.67634 * 9 8 7 34 34 H 1.08994 * 110.87148 * 81.47536 * 9 8 7 35 35 H 1.09001 * 110.37289 * 263.05957 * 10 9 8 36 36 H 1.08998 * 110.46440 * 140.77176 * 10 9 8 37 37 H 1.09005 * 110.99771 * 333.67838 * 12 11 7 38 38 H 1.08999 * 110.99894 * 97.48732 * 12 11 7 39 39 H 1.09006 * 110.39162 * 266.06001 * 13 12 11 40 40 H 1.08995 * 110.17712 * 144.01963 * 13 12 11 41 41 H 1.09004 * 109.47346 * 34.76213 * 15 14 13 42 42 H 1.08999 * 109.46985 * 154.76124 * 15 14 13 43 43 H 1.09003 * 109.46954 * 297.29961 * 16 15 14 44 44 H 1.08997 * 109.47209 * 57.29819 * 16 15 14 45 45 H 0.97002 * 120.00143 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.96480 * 179.73034 * 27 6 5 47 47 H 1.08001 * 120.04254 * 180.29505 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.0638 0.5743 5 6 4.6458 -1.0602 0.5721 6 6 5.3394 0.0013 -0.0015 7 7 6.7313 0.0014 -0.0025 8 6 7.2649 -1.2545 0.5891 9 6 8.7056 -1.3331 0.0227 10 6 8.5429 -0.7857 -1.4161 11 6 7.2574 0.0475 -1.3752 12 6 7.5391 1.4989 -1.8016 13 6 7.1642 1.4580 -3.3032 14 7 6.2019 0.3565 -3.4354 15 6 5.3126 0.1688 -4.5843 16 6 4.0440 1.0015 -4.3888 17 6 3.1589 0.8607 -5.6003 18 1 3.4702 0.2396 -6.4272 19 6 1.9517 1.5246 -5.6530 20 7 1.5724 2.2804 -4.6459 21 14 0.8542 1.3494 -7.1545 22 1 1.5043 0.4491 -8.1405 23 1 -0.4538 0.7762 -6.7474 24 1 0.6400 2.6840 -7.7695 25 6 6.2464 -0.4618 -2.3668 26 8 5.5730 -1.4605 -2.2251 27 6 4.6446 1.0651 -0.5692 28 6 3.2681 1.0655 -0.5751 29 1 2.7314 -1.8884 1.0184 30 1 5.1879 -1.8824 1.0152 31 1 6.6768 -2.1127 0.2637 32 1 7.2825 -1.1925 1.6771 33 1 9.0575 -2.3645 0.0055 34 1 9.3845 -0.7052 0.5997 35 1 8.4403 -1.6071 -2.1252 36 1 9.3932 -0.1584 -1.6836 37 1 6.9045 2.1967 -1.2552 38 1 8.5924 1.7470 -1.6705 39 1 8.0480 1.2614 -3.9101 40 1 6.7030 2.3995 -3.6013 41 1 5.8211 0.4893 -5.4936 42 1 5.0461 -0.8847 -4.6692 43 1 3.5105 0.6491 -3.5060 44 1 4.3140 2.0491 -4.2560 45 1 0.7232 2.7478 -4.6832 46 1 5.1860 1.8894 -1.0096 47 1 2.7295 1.8891 -1.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274821944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = 26.339370 kcal Electronic energy + Delta-G solvation = -30837.012329 eV Core-core repulsion = 26984.386718 eV Total energy + Delta-G solvation = -3852.625611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.83874 -40.21689 -38.77132 -37.53075 -37.28134 -35.57517 -33.93709 -33.50571 -32.17907 -30.65420 -29.91351 -28.83132 -26.94034 -25.26935 -24.30015 -23.87553 -23.44639 -21.88618 -21.46591 -20.17606 -19.87275 -18.67169 -18.32113 -17.42484 -16.78916 -16.67516 -16.47790 -16.19688 -15.87053 -15.68268 -15.21965 -15.06456 -15.01894 -14.74537 -14.54803 -14.39422 -14.28775 -14.05406 -13.94709 -13.82699 -13.53373 -13.25225 -13.09462 -12.96143 -12.87580 -12.75954 -12.63059 -12.48673 -12.23382 -12.08517 -11.93623 -11.87969 -11.76692 -11.44921 -11.35384 -11.06206 -10.59956 -10.35991 -10.01160 -9.49563 -8.95183 -8.23712 -6.33811 -0.24962 0.39425 1.33748 1.36226 1.47375 1.55404 1.56488 1.84247 2.16243 2.39424 2.60408 2.90248 2.95961 3.11038 3.35369 3.46530 3.59263 3.81077 3.86836 3.95916 4.06450 4.22195 4.23826 4.29389 4.35137 4.43383 4.56700 4.61590 4.70491 4.74183 4.76791 4.87085 4.89268 4.93569 4.98275 5.03231 5.08317 5.11287 5.16506 5.25044 5.35454 5.37199 5.39824 5.52426 5.54957 5.61701 5.80670 5.85893 6.12673 6.18473 6.34152 6.39472 6.80995 7.24550 7.35129 8.86676 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.004914 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.004918 B = 5696.838689 C = 7643.938136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.279 3.721 3 C -0.077 4.077 4 C -0.040 4.040 5 C -0.153 4.153 6 C 0.139 3.861 7 N -0.441 5.441 8 C 0.016 3.984 9 C -0.110 4.110 10 C -0.108 4.108 11 C 0.068 3.932 12 C -0.110 4.110 13 C 0.090 3.910 14 N -0.612 5.612 15 C 0.142 3.858 16 C 0.032 3.968 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.008 3.992 20 N -0.923 5.923 21 Si 0.955 3.045 22 H -0.258 1.258 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.492 3.508 26 O -0.565 6.565 27 C -0.146 4.146 28 C -0.046 4.046 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.049 0.951 43 H -0.017 1.017 44 H 0.001 0.999 45 H 0.260 0.740 46 H 0.134 0.866 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.252 -3.777 11.900 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.035 4.035 3 C -0.081 4.081 4 C -0.061 4.061 5 C -0.173 4.173 6 C 0.040 3.960 7 N -0.156 5.156 8 C -0.109 4.109 9 C -0.148 4.148 10 C -0.146 4.146 11 C -0.023 4.023 12 C -0.147 4.147 13 C -0.032 4.032 14 N -0.344 5.344 15 C 0.020 3.980 16 C -0.006 4.006 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.562 5.562 21 Si 0.780 3.220 22 H -0.182 1.182 23 H -0.216 1.216 24 H -0.199 1.199 25 C 0.279 3.721 26 O -0.443 6.443 27 C -0.166 4.166 28 C -0.067 4.067 29 H 0.171 0.829 30 H 0.181 0.819 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.001 0.999 44 H 0.020 0.980 45 H 0.068 0.932 46 H 0.152 0.848 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.212 -3.729 12.229 23.916 hybrid contribution -1.744 -0.303 -1.533 2.342 sum 18.468 -4.032 10.696 21.719 Atomic orbital electron populations 1.81152 1.13249 1.09431 1.11087 1.26062 0.93089 0.92329 0.91992 1.16101 0.83372 0.99850 1.08812 1.21196 0.94355 0.95598 0.94968 1.21411 0.93675 0.98067 1.04188 1.19218 0.89790 0.92836 0.94202 1.61869 1.03774 1.36271 1.13674 1.23795 0.96326 0.89128 1.01698 1.22568 0.95204 1.03084 0.93951 1.22402 0.94096 0.98984 0.99148 1.22314 0.95099 0.99257 0.85647 1.22927 1.05839 0.93024 0.92941 1.22515 0.92492 0.90002 0.98208 1.48593 1.38304 1.27823 1.19719 1.21320 0.90329 0.99292 0.87020 1.19123 0.92038 0.94256 0.95221 1.21551 1.04089 1.28632 1.03645 0.92093 1.25818 0.99301 0.94888 0.99049 1.70082 1.22242 1.31334 1.32573 0.85549 0.78327 0.78362 0.79765 1.18221 1.21576 1.19883 1.21614 0.83543 0.82930 0.84011 1.90687 1.47702 1.27578 1.78374 1.20812 0.93041 0.99662 1.03043 1.21005 0.94742 0.96688 0.94291 0.82907 0.81916 0.92497 0.86809 0.88952 0.87917 0.92206 0.86254 0.89780 0.84425 0.87973 0.90527 0.89824 0.93279 0.99882 0.98029 0.93161 0.84816 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.48 18.54 19.00 0.35 -20.13 16 2 C 0.28 11.08 15.33 88.33 1.35 12.43 16 3 C -0.08 -2.74 5.74 -21.27 -0.12 -2.86 16 4 C -0.04 -1.16 9.75 22.51 0.22 -0.94 16 5 C -0.15 -4.03 8.24 22.36 0.18 -3.84 16 6 C 0.14 3.86 3.72 38.42 0.14 4.01 16 7 N -0.44 -9.42 4.97 -641.88 -3.19 -12.61 16 8 C 0.02 0.26 5.36 86.64 0.46 0.72 16 9 C -0.11 -1.16 7.08 31.90 0.23 -0.94 16 10 C -0.11 -1.54 6.24 31.29 0.20 -1.35 16 11 C 0.07 1.44 0.64 3.06 0.00 1.45 16 12 C -0.11 -1.86 5.87 31.51 0.18 -1.67 16 13 C 0.09 1.97 7.37 86.93 0.64 2.61 16 14 N -0.61 -19.98 2.94 -817.76 -2.41 -22.39 16 15 C 0.14 5.84 5.93 86.38 0.51 6.35 16 16 C 0.03 1.64 5.30 29.85 0.16 1.80 16 17 C -0.54 -30.64 9.11 25.60 0.23 -30.40 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.92 -56.59 13.29 21.45 0.28 -56.31 16 21 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.49 16.00 4.52 87.61 0.40 16.40 16 26 O -0.56 -23.08 15.84 -3.04 -0.05 -23.13 16 27 C -0.15 -4.75 8.13 22.35 0.18 -4.57 16 28 C -0.05 -1.71 9.75 22.51 0.22 -1.49 16 29 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.16 3.25 5.72 -2.91 -0.02 3.23 16 31 H 0.06 1.10 6.23 -2.39 -0.01 1.09 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 1.08 7.73 -2.39 -0.02 1.06 16 36 H 0.12 0.94 7.29 -2.39 -0.02 0.92 16 37 H 0.08 1.61 6.03 -2.38 -0.01 1.60 16 38 H 0.14 1.16 7.41 -2.39 -0.02 1.14 16 39 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.05 2.20 7.82 -2.39 -0.02 2.19 16 43 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.13 4.16 5.55 -2.91 -0.02 4.15 16 47 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -78.72 381.03 3.66 -75.06 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.99 Total: 13.45 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.65 Total: -1.36 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -4.96 Total: -111.43 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -78.72 3.66 -75.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274821944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.400 kcal (2) G-P(sol) polarization free energy of solvation -78.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds