Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00399 * 2 1 4 4 H 1.48503 * 109.47004 * 270.00381 * 3 2 1 5 5 H 1.48497 * 109.46805 * 30.00321 * 3 2 1 6 6 H 1.48504 * 109.47241 * 150.00250 * 3 2 1 7 7 C 1.38824 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99649 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99855 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00264 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47513 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47372 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47251 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47242 * 55.00305 * 13 12 11 15 15 N 1.46493 * 109.47282 * 295.00056 * 13 12 11 16 16 C 1.34777 * 120.00267 * 154.99750 * 15 13 12 17 17 O 1.21552 * 119.99634 * 0.02562 * 16 15 13 18 18 C 1.47838 * 120.00269 * 180.02562 * 16 15 13 19 19 C 1.40027 * 120.55866 * 179.72526 * 18 16 15 20 20 C 1.38359 * 118.28490 * 179.73625 * 19 18 16 21 21 C 1.38352 * 119.30348 * 0.55764 * 20 19 18 22 22 N 1.31924 * 121.08280 * 359.70019 * 21 20 19 23 23 C 1.31695 * 121.87605 * 0.02562 * 22 21 20 24 24 C 1.50702 * 109.47066 * 174.99706 * 13 12 11 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 13 12 30 30 H 0.96999 * 119.99845 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99877 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47109 * 59.99747 * 10 9 7 33 33 H 1.09000 * 109.47278 * 299.99875 * 10 9 7 34 34 H 1.09006 * 109.46916 * 59.99734 * 11 10 9 35 35 H 1.09006 * 109.47184 * 300.00323 * 11 10 9 36 36 H 1.08997 * 109.47102 * 59.99884 * 12 11 10 37 37 H 1.09000 * 109.47426 * 299.99926 * 12 11 10 38 38 H 0.97004 * 119.99906 * 335.00687 * 15 13 12 39 39 H 1.07997 * 120.85764 * 359.97438 * 19 18 16 40 40 H 1.07994 * 120.34659 * 180.26002 * 20 19 18 41 41 H 1.08004 * 119.46139 * 179.72664 * 21 20 19 42 42 H 1.08007 * 119.71873 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 44 44 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 46 46 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6525 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1120 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 6 6.3812 -3.5166 -0.0017 13 6 7.8855 -3.2371 -0.0036 14 1 8.1359 -2.5903 0.8372 15 7 8.2576 -2.5754 -1.2565 16 6 9.3555 -1.7951 -1.3063 17 8 10.0370 -1.6409 -0.3118 18 6 9.7307 -1.1269 -2.5706 19 6 10.8656 -0.3092 -2.6340 20 6 11.1762 0.2887 -3.8425 21 6 10.3570 0.0711 -4.9359 22 7 9.2907 -0.7003 -4.8453 23 6 8.9565 -1.2955 -3.7190 24 6 8.6380 -4.5368 0.1209 25 6 9.1458 -4.9269 1.3460 26 6 9.8356 -6.1193 1.4602 27 6 10.0173 -6.9219 0.3495 28 6 9.5086 -6.5324 -0.8753 29 6 8.8202 -5.3390 -0.9900 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3623 -0.0014 32 1 3.8483 -3.0428 -0.8908 33 1 3.8491 -3.0424 0.8891 34 1 5.8803 -1.6196 0.8872 35 1 5.8789 -1.6204 -0.8928 36 1 6.1172 -4.0889 -0.8910 37 1 6.1185 -4.0874 0.8889 38 1 7.7138 -2.6987 -2.0503 39 1 11.4847 -0.1524 -1.7631 40 1 12.0463 0.9224 -3.9300 41 1 10.5946 0.5401 -5.8794 42 1 8.0756 -1.9194 -3.6840 43 1 9.0035 -4.3000 2.2138 44 1 10.2320 -6.4243 2.4174 45 1 10.5601 -7.8514 0.4378 46 1 9.6508 -7.1592 -1.7432 47 1 8.4236 -5.0343 -1.9472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277542550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 11.031730 kcal Electronic energy + Delta-G solvation = -28197.191458 eV Core-core repulsion = 24343.902059 eV Total energy + Delta-G solvation = -3853.289400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78051 -40.67771 -39.57966 -37.82949 -36.53174 -34.37438 -33.62526 -33.31295 -32.12934 -31.84243 -31.60489 -28.62137 -26.11385 -25.20994 -24.49035 -23.71368 -23.44836 -22.37696 -22.10945 -21.40261 -19.65127 -19.19909 -18.06614 -17.83783 -17.40637 -16.79778 -16.62785 -16.45130 -16.00738 -15.96989 -15.80609 -15.72772 -15.20265 -14.90610 -14.72184 -14.60789 -14.28908 -14.19487 -14.15557 -13.99281 -13.68013 -13.51630 -13.21393 -12.98033 -12.78735 -12.53245 -12.29285 -12.01383 -11.92891 -11.89197 -11.78240 -11.72369 -11.34955 -11.00223 -10.98158 -10.50272 -10.38961 -10.14841 -9.79667 -9.62377 -9.30750 -8.04627 -5.37896 -0.40913 0.17953 0.42148 0.52172 1.36152 1.39157 1.46582 1.77579 2.01451 2.46506 2.82201 2.88051 3.26977 3.29570 3.45322 3.68462 3.78120 3.85274 3.88175 3.91297 3.96634 4.01707 4.11849 4.18004 4.29127 4.37558 4.43111 4.50278 4.59741 4.64773 4.69028 4.71548 4.82061 4.86416 4.97486 5.05079 5.08557 5.10186 5.15470 5.25797 5.38478 5.39038 5.55544 5.57948 5.63427 5.72130 5.74559 6.12426 6.20091 6.38837 6.82276 7.06649 7.07247 7.83763 8.01759 9.17075 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007291 B = 0.003402 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.374645 B = 8227.401857 C =11169.095108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.762 5.762 10 C 0.152 3.848 11 C -0.116 4.116 12 C -0.105 4.105 13 C 0.194 3.806 14 H 0.083 0.917 15 N -0.704 5.704 16 C 0.567 3.433 17 O -0.570 6.570 18 C -0.202 4.202 19 C -0.031 4.031 20 C -0.170 4.170 21 C 0.118 3.882 22 N -0.510 5.510 23 C 0.132 3.868 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.115 4.115 30 H 0.258 0.742 31 H 0.365 0.635 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.412 0.588 39 H 0.145 0.855 40 H 0.175 0.825 41 H 0.191 0.809 42 H 0.174 0.826 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.886 -8.840 -7.099 31.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.408 5.408 10 C 0.027 3.973 11 C -0.154 4.154 12 C -0.144 4.144 13 C 0.090 3.910 14 H 0.101 0.899 15 N -0.355 5.355 16 C 0.354 3.646 17 O -0.450 6.450 18 C -0.207 4.207 19 C -0.057 4.057 20 C -0.189 4.189 21 C -0.038 4.038 22 N -0.219 5.219 23 C -0.026 4.026 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.146 4.146 28 C -0.147 4.147 29 C -0.133 4.133 30 H 0.067 0.933 31 H 0.198 0.802 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.250 0.750 39 H 0.163 0.837 40 H 0.192 0.808 41 H 0.208 0.792 42 H 0.191 0.809 43 H 0.141 0.859 44 H 0.155 0.845 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 29.618 -8.977 -7.127 31.759 hybrid contribution 0.043 1.148 0.710 1.350 sum 29.662 -7.829 -6.417 31.342 Atomic orbital electron populations 1.69884 1.07120 1.26733 1.59705 1.25523 0.96138 1.01274 1.02634 0.85405 0.78535 0.79625 0.78195 1.20213 1.22141 1.17950 1.19079 0.82848 0.93527 1.41324 0.92472 1.42778 1.02532 1.04440 1.91015 1.20822 0.90944 0.87170 0.98401 1.21655 0.93315 0.98090 1.02372 1.21713 0.90583 0.97130 1.04927 1.19790 0.93756 0.90387 0.87091 0.89941 1.45878 1.27189 1.48253 1.14199 1.18274 0.80501 0.78181 0.87641 1.90759 1.53061 1.63818 1.37333 1.20976 1.00446 1.04196 0.95068 1.21951 0.93599 0.90896 0.99303 1.22511 1.02664 1.01427 0.92332 1.23626 0.88354 0.91619 1.00200 1.67779 1.17949 1.09121 1.27059 1.23235 0.97625 0.94877 0.86844 1.20194 0.99422 0.96271 0.94430 1.21211 0.98145 0.97426 0.97360 1.21397 0.98932 0.94476 0.99830 1.21477 0.99885 1.00436 0.92812 1.21439 0.98043 0.96687 0.98531 1.21122 0.99233 0.94595 0.98395 0.93279 0.80240 0.95140 0.95976 0.92391 0.91261 0.89249 0.89388 0.74968 0.83734 0.80758 0.79186 0.80893 0.85897 0.84453 0.84125 0.84239 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.77 13.97 21.66 0.30 -63.46 16 2 C -0.06 -3.84 5.50 84.87 0.47 -3.37 16 3 Si 0.96 46.11 27.73 68.60 1.90 48.01 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.25 -11.20 6.52 99.48 0.65 -10.56 16 7 C -0.24 -13.72 10.47 84.04 0.88 -12.84 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 N -0.76 -35.84 5.41 -343.47 -1.86 -37.69 16 10 C 0.15 5.53 6.26 86.38 0.54 6.08 16 11 C -0.12 -3.09 5.21 30.59 0.16 -2.93 16 12 C -0.11 -2.10 4.73 30.59 0.14 -1.96 16 13 C 0.19 3.97 2.17 44.25 0.10 4.06 16 14 H 0.08 2.01 7.44 -2.39 -0.02 1.99 16 15 N -0.70 -13.17 3.72 -448.99 -1.67 -14.85 16 16 C 0.57 13.12 7.74 86.78 0.67 13.80 16 17 O -0.57 -17.29 16.08 -3.88 -0.06 -17.35 16 18 C -0.20 -3.95 5.89 -19.99 -0.12 -4.07 16 19 C -0.03 -0.53 9.72 22.73 0.22 -0.31 16 20 C -0.17 -2.01 10.10 22.33 0.23 -1.78 16 21 C 0.12 1.55 11.17 84.71 0.95 2.50 16 22 N -0.51 -9.41 10.35 -194.75 -2.01 -11.43 16 23 C 0.13 2.33 10.71 85.02 0.91 3.24 16 24 C -0.10 -2.08 4.91 -19.87 -0.10 -2.17 16 25 C -0.12 -2.52 9.67 22.27 0.22 -2.31 16 26 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 27 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 28 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 29 C -0.12 -2.08 9.32 22.27 0.21 -1.87 16 30 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.36 16.42 5.53 -92.71 -0.51 15.91 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.07 1.75 7.75 -2.38 -0.02 1.73 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.41 5.73 6.67 -92.71 -0.62 5.11 16 39 H 0.14 2.48 7.74 -2.91 -0.02 2.46 16 40 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.17 2.24 6.42 -2.91 -0.02 2.22 16 43 H 0.12 2.39 8.04 -2.91 -0.02 2.36 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 47 H 0.13 1.90 7.72 -2.91 -0.02 1.88 16 Total: -1.00 -79.32 396.40 2.54 -76.78 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.20 Total: 29.69 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 6.14 Total: -9.70 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -5.24 Total: -127.43 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.06 Total: -17.35 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Total: -79.32 2.54 -76.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277542550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.811 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds