Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48503 * 109.46888 * 269.99921 * 3 2 1 5 5 H 1.48500 * 109.47001 * 29.99708 * 3 2 1 6 6 H 1.48498 * 109.47408 * 150.00101 * 3 2 1 7 7 C 1.38813 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99832 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00267 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99889 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46968 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46749 * 295.00134 * 11 10 9 13 13 N 1.46497 * 109.46921 * 54.99891 * 11 10 9 14 14 C 1.34779 * 120.00154 * 243.94221 * 13 11 10 15 15 O 1.21281 * 119.99724 * 354.82813 * 14 13 11 16 16 C 1.50703 * 119.99832 * 174.83104 * 14 13 11 17 17 N 1.46497 * 109.46820 * 179.97438 * 16 14 13 18 18 C 1.36375 * 125.96503 * 269.69220 * 17 16 14 19 19 O 1.35631 * 125.98462 * 0.03343 * 18 17 16 20 20 N 1.30905 * 108.02618 * 179.88901 * 18 17 16 21 21 N 1.40114 * 107.93608 * 0.36808 * 20 18 17 22 22 C 1.30903 * 107.94530 * 359.76489 * 21 20 18 23 23 O 1.35627 * 125.99416 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47130 * 175.00285 * 11 10 9 25 25 C 1.54265 * 110.03034 * 296.81626 * 24 11 10 26 26 C 1.54972 * 104.15848 * 217.13581 * 25 24 11 27 27 C 1.54894 * 102.77489 * 37.88797 * 26 25 24 28 28 C 1.53864 * 110.03146 * 179.59670 * 24 11 10 29 29 H 0.96996 * 119.99788 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99774 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46799 * 60.00880 * 10 9 7 32 32 H 1.08996 * 109.47362 * 300.00387 * 10 9 7 33 33 H 0.97001 * 119.99813 * 63.94761 * 13 11 10 34 34 H 1.08996 * 109.47291 * 60.00228 * 16 14 13 35 35 H 1.08998 * 109.46929 * 299.99978 * 16 14 13 36 36 H 0.96695 * 113.99956 * 90.00818 * 19 18 17 37 37 H 0.96703 * 113.99753 * 270.03085 * 23 22 21 38 38 H 1.08999 * 110.01554 * 58.20611 * 24 11 10 39 39 H 1.08998 * 110.49143 * 335.78374 * 25 24 11 40 40 H 1.08998 * 110.48719 * 98.42626 * 25 24 11 41 41 H 1.08998 * 110.71913 * 279.57253 * 26 25 24 42 42 H 1.09002 * 110.92196 * 156.29654 * 26 25 24 43 43 H 1.08999 * 110.48394 * 203.40362 * 27 26 25 44 44 H 1.09004 * 110.59742 * 80.81553 * 27 26 25 45 45 H 1.09005 * 110.03667 * 238.56598 * 28 24 11 46 46 H 1.08999 * 110.03427 * 359.95523 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0011 11 6 5.6165 -2.1913 0.0009 12 1 5.8943 -1.6987 -0.9310 13 7 5.9518 -1.3221 1.1315 14 6 6.4422 -0.0866 0.9095 15 8 6.6943 0.2715 -0.2215 16 6 6.6775 0.8499 2.0665 17 7 7.2102 2.1197 1.5665 18 6 8.5291 2.4267 1.4048 19 8 9.5768 1.6100 1.6781 20 7 8.6065 3.6468 0.9366 21 7 7.3022 4.1406 0.8014 22 6 6.4740 3.2031 1.1869 23 8 5.1209 3.2935 1.2061 24 6 6.3805 -3.5108 0.1277 25 6 6.0573 -4.1806 1.4793 26 6 7.4009 -4.8160 1.9182 27 6 8.4421 -3.7624 1.4656 28 6 7.8960 -3.2453 0.1187 29 1 -0.4849 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.8486 -3.0433 -0.8882 32 1 3.8491 -3.0415 0.8918 33 1 5.8208 -1.6360 2.0400 34 1 7.3932 0.4026 2.7563 35 1 5.7361 1.0296 2.5857 36 1 9.8522 1.0605 0.9316 37 1 4.7610 3.6312 2.0378 38 1 6.1132 -4.1770 -0.6925 39 1 5.7321 -3.4362 2.2060 40 1 5.2948 -4.9489 1.3516 41 1 7.5640 -5.7648 1.4070 42 1 7.4328 -4.9510 2.9994 43 1 9.4191 -4.2260 1.3285 44 1 8.5047 -2.9496 2.1892 45 1 8.3645 -3.7833 -0.7055 46 1 8.0873 -2.1764 0.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278288566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = -8.113119 kcal Electronic energy + Delta-G solvation = -31560.161867 eV Core-core repulsion = 27295.193021 eV Total energy + Delta-G solvation = -4264.968846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41280 -40.31049 -38.36017 -38.29224 -37.19035 -35.57445 -34.40910 -33.75845 -31.61420 -30.35052 -29.66696 -28.91620 -28.09761 -26.56819 -23.33278 -22.88373 -22.27885 -21.65614 -21.33836 -20.37389 -19.54790 -18.99439 -18.84667 -17.85697 -17.69261 -16.95124 -16.44923 -15.99012 -15.88919 -15.49841 -15.17209 -14.92911 -14.44100 -14.13354 -13.89689 -13.66728 -13.45476 -13.40764 -13.04425 -12.82238 -12.65792 -12.51057 -12.29963 -11.99609 -11.64801 -11.51636 -11.28273 -11.21095 -10.91357 -10.86504 -10.78946 -10.76554 -10.67697 -10.66272 -10.53141 -10.08498 -9.77126 -9.64834 -9.51105 -9.03200 -8.94573 -7.29667 -5.81165 -3.18241 1.31009 1.63544 2.12005 2.37098 2.95132 3.15700 3.36626 3.44392 3.54044 3.64431 4.20749 4.36089 4.42523 4.47641 4.53989 4.57788 4.64072 4.98800 5.08325 5.10119 5.20548 5.27958 5.40099 5.41948 5.47346 5.48781 5.53701 5.61560 5.68658 5.72062 5.74727 5.86968 5.92884 5.93886 6.08223 6.11904 6.17689 6.26145 6.45739 6.63801 6.87674 7.18022 7.34800 7.78165 7.92610 8.02833 8.36443 9.15509 9.88125 10.07174 11.35914 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007097 B = 0.006776 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3944.371807 B = 4131.475842 C = 7657.190698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.147 3.853 11 C 0.134 3.866 12 H 0.101 0.899 13 N -0.701 5.701 14 C 0.501 3.499 15 O -0.527 6.527 16 C 0.079 3.921 17 N -0.496 5.496 18 C 0.411 3.589 19 O -0.439 6.439 20 N -0.295 5.295 21 N -0.298 5.298 22 C 0.422 3.578 23 O -0.426 6.426 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.401 0.599 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.412 0.588 37 H 0.409 0.591 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.816 -6.521 8.982 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.193 4.193 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.018 3.982 11 C 0.030 3.970 12 H 0.119 0.881 13 N -0.353 5.353 14 C 0.284 3.716 15 O -0.402 6.402 16 C -0.049 4.049 17 N -0.215 5.215 18 C 0.101 3.899 19 O -0.239 6.239 20 N -0.139 5.139 21 N -0.143 5.143 22 C 0.113 3.887 23 O -0.225 6.225 24 C -0.118 4.118 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.155 4.155 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.236 0.764 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.271 0.729 37 H 0.267 0.733 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.302 -4.947 7.598 21.325 hybrid contribution -0.377 -0.476 0.887 1.075 sum 18.925 -5.423 8.485 21.437 Atomic orbital electron populations 1.69718 1.05172 1.25900 1.57256 1.24723 0.95278 0.97478 1.01774 0.86488 0.78756 0.84173 0.78295 1.21513 1.22073 1.19449 1.19011 0.80527 0.94666 1.43552 0.89330 1.42630 1.03982 1.02026 1.91160 1.21023 0.87786 0.89922 0.99434 1.21489 0.95556 0.89709 0.90260 0.88102 1.45790 1.64584 1.14286 1.10670 1.20471 0.77901 0.82830 0.90362 1.90786 1.50981 1.75278 1.23193 1.21763 1.03708 0.82973 0.96424 1.46579 1.06875 1.14149 1.53938 1.21214 0.78764 0.90998 0.98904 1.84874 1.42497 1.55402 1.41111 1.78308 1.11125 1.06200 1.18291 1.78377 0.93950 1.19781 1.22145 1.21413 0.85501 0.84579 0.97233 1.85239 1.09720 1.86303 1.41284 1.22085 0.94856 0.95965 0.98858 1.22436 0.97265 0.99622 0.96264 1.22514 0.94943 0.98307 1.00462 1.22327 0.98296 0.98309 0.96964 1.22152 0.94736 1.01277 0.97375 0.93079 0.80485 0.94509 0.94961 0.76377 0.85453 0.85354 0.72925 0.73259 0.89595 0.91610 0.91075 0.91603 0.91777 0.92103 0.92066 0.92019 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.49 27.45 -169.99 -4.67 17.82 16 4 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.07 5.57 56.52 0.31 -5.76 16 7 C -0.25 -6.84 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 9 N -0.75 -17.03 5.24 -59.90 -0.31 -17.35 16 10 C 0.15 2.53 5.84 -4.04 -0.02 2.51 16 11 C 0.13 1.80 2.04 -67.93 -0.14 1.66 16 12 H 0.10 1.63 6.91 -51.93 -0.36 1.27 16 13 N -0.70 -8.15 3.74 -53.80 -0.20 -8.35 16 14 C 0.50 6.64 7.02 -10.98 -0.08 6.56 16 15 O -0.53 -9.32 15.77 5.56 0.09 -9.23 16 16 C 0.08 0.80 6.50 -5.19 -0.03 0.76 16 17 N -0.50 -6.44 2.25 -121.35 -0.27 -6.71 16 18 C 0.41 5.43 9.15 -88.81 -0.81 4.61 16 19 O -0.44 -4.12 13.57 -18.59 -0.25 -4.37 16 20 N -0.30 -4.79 12.72 29.66 0.38 -4.42 16 21 N -0.30 -5.14 12.72 29.66 0.38 -4.76 16 22 C 0.42 6.48 9.15 -88.81 -0.81 5.66 16 23 O -0.43 -6.22 12.34 -18.58 -0.23 -6.45 16 24 C -0.10 -0.98 2.81 -89.51 -0.25 -1.23 16 25 C -0.12 -1.02 5.14 -25.03 -0.13 -1.15 16 26 C -0.12 -0.90 6.91 -24.69 -0.17 -1.07 16 27 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 28 C -0.12 -1.06 6.20 -25.62 -0.16 -1.22 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.33 4.71 -40.82 -0.19 8.14 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.54 7.15 -51.93 -0.37 0.16 16 33 H 0.40 3.63 6.97 -40.82 -0.28 3.35 16 34 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.41 2.25 9.06 45.56 0.41 2.66 16 37 H 0.41 3.48 9.06 45.56 0.41 3.89 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.56 5.96 -51.93 -0.31 0.25 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.67 7.09 -51.93 -0.37 0.30 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -39.17 377.81 -6.59 -45.76 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.93 Total: 11.58 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -3.03 Total: 9.05 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: 0.74 Total: -69.86 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.39 Total: -20.05 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.17 -6.59 -45.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278288566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.648 kcal (2) G-P(sol) polarization free energy of solvation -39.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds