Wall clock time and date at job start Sat Apr 11 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48503 * 109.46888 * 269.99921 * 3 2 1 5 5 H 1.48500 * 109.47001 * 29.99708 * 3 2 1 6 6 H 1.48498 * 109.47408 * 150.00101 * 3 2 1 7 7 C 1.38813 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99832 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00267 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99889 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46968 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46749 * 295.00134 * 11 10 9 13 13 N 1.46497 * 109.46921 * 54.99891 * 11 10 9 14 14 C 1.34779 * 120.00154 * 243.94221 * 13 11 10 15 15 O 1.21281 * 119.99724 * 354.82813 * 14 13 11 16 16 C 1.50703 * 119.99832 * 174.83104 * 14 13 11 17 17 N 1.46497 * 109.46820 * 179.97438 * 16 14 13 18 18 C 1.36375 * 125.96503 * 269.69220 * 17 16 14 19 19 O 1.35631 * 125.98462 * 0.03343 * 18 17 16 20 20 N 1.30905 * 108.02618 * 179.88901 * 18 17 16 21 21 N 1.40114 * 107.93608 * 0.36808 * 20 18 17 22 22 C 1.30903 * 107.94530 * 359.76489 * 21 20 18 23 23 O 1.35627 * 125.99416 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47130 * 175.00285 * 11 10 9 25 25 C 1.54265 * 110.03034 * 296.81626 * 24 11 10 26 26 C 1.54972 * 104.15848 * 217.13581 * 25 24 11 27 27 C 1.54894 * 102.77489 * 37.88797 * 26 25 24 28 28 C 1.53864 * 110.03146 * 179.59670 * 24 11 10 29 29 H 0.96996 * 119.99788 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99774 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46799 * 60.00880 * 10 9 7 32 32 H 1.08996 * 109.47362 * 300.00387 * 10 9 7 33 33 H 0.97001 * 119.99813 * 63.94761 * 13 11 10 34 34 H 1.08996 * 109.47291 * 60.00228 * 16 14 13 35 35 H 1.08998 * 109.46929 * 299.99978 * 16 14 13 36 36 H 0.96695 * 113.99956 * 90.00818 * 19 18 17 37 37 H 0.96703 * 113.99753 * 270.03085 * 23 22 21 38 38 H 1.08999 * 110.01554 * 58.20611 * 24 11 10 39 39 H 1.08998 * 110.49143 * 335.78374 * 25 24 11 40 40 H 1.08998 * 110.48719 * 98.42626 * 25 24 11 41 41 H 1.08998 * 110.71913 * 279.57253 * 26 25 24 42 42 H 1.09002 * 110.92196 * 156.29654 * 26 25 24 43 43 H 1.08999 * 110.48394 * 203.40362 * 27 26 25 44 44 H 1.09004 * 110.59742 * 80.81553 * 27 26 25 45 45 H 1.09005 * 110.03667 * 238.56598 * 28 24 11 46 46 H 1.08999 * 110.03427 * 359.95523 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0011 11 6 5.6165 -2.1913 0.0009 12 1 5.8943 -1.6987 -0.9310 13 7 5.9518 -1.3221 1.1315 14 6 6.4422 -0.0866 0.9095 15 8 6.6943 0.2715 -0.2215 16 6 6.6775 0.8499 2.0665 17 7 7.2102 2.1197 1.5665 18 6 8.5291 2.4267 1.4048 19 8 9.5768 1.6100 1.6781 20 7 8.6065 3.6468 0.9366 21 7 7.3022 4.1406 0.8014 22 6 6.4740 3.2031 1.1869 23 8 5.1209 3.2935 1.2061 24 6 6.3805 -3.5108 0.1277 25 6 6.0573 -4.1806 1.4793 26 6 7.4009 -4.8160 1.9182 27 6 8.4421 -3.7624 1.4656 28 6 7.8960 -3.2453 0.1187 29 1 -0.4849 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.8486 -3.0433 -0.8882 32 1 3.8491 -3.0415 0.8918 33 1 5.8208 -1.6360 2.0400 34 1 7.3932 0.4026 2.7563 35 1 5.7361 1.0296 2.5857 36 1 9.8522 1.0605 0.9316 37 1 4.7610 3.6312 2.0378 38 1 6.1132 -4.1770 -0.6925 39 1 5.7321 -3.4362 2.2060 40 1 5.2948 -4.9489 1.3516 41 1 7.5640 -5.7648 1.4070 42 1 7.4328 -4.9510 2.9994 43 1 9.4191 -4.2260 1.3285 44 1 8.5047 -2.9496 2.1892 45 1 8.3645 -3.7833 -0.7055 46 1 8.0873 -2.1764 0.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278288566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:57 Heat of formation + Delta-G solvation = -44.438202 kcal Electronic energy + Delta-G solvation = -31561.737040 eV Core-core repulsion = 27295.193021 eV Total energy + Delta-G solvation = -4266.544020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.42997 -41.33217 -39.26429 -39.22232 -38.12339 -36.95852 -35.41785 -35.23481 -33.40399 -31.63689 -30.74022 -29.59612 -28.96664 -27.93391 -24.87430 -23.91547 -23.43837 -22.91562 -22.31528 -21.14709 -20.49617 -19.97478 -19.88406 -19.59035 -18.71475 -17.93413 -17.45777 -16.98247 -16.84425 -16.60605 -16.40970 -16.07289 -15.70473 -15.54610 -15.15230 -14.78469 -14.62195 -14.22878 -14.17294 -14.00627 -13.82198 -13.54739 -13.48333 -13.35012 -13.15771 -12.90704 -12.59840 -12.08664 -11.97078 -11.87805 -11.86784 -11.82694 -11.75981 -11.63897 -11.53154 -11.43887 -11.33769 -11.05794 -10.79264 -10.59183 -10.11082 -9.31731 -8.05127 -5.38078 0.34194 0.66977 1.08105 1.32312 1.37855 1.45278 1.47597 2.01407 2.14994 2.46337 2.79678 3.26909 3.38025 3.41835 3.55505 3.71150 3.81543 3.96326 3.98710 4.09668 4.18153 4.21340 4.35121 4.49679 4.61195 4.62616 4.68745 4.78467 4.86197 4.89042 4.91037 5.07264 5.11085 5.16040 5.17336 5.33753 5.38789 5.45160 5.54397 5.56714 5.73642 6.13993 6.17662 6.31608 6.42431 6.72939 7.05132 7.08251 7.82071 7.98755 9.15135 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007097 B = 0.006776 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3944.371807 B = 4131.475842 C = 7657.190698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.316 1.316 5 H -0.291 1.291 6 H -0.232 1.232 7 C -0.228 4.228 8 H 0.062 0.938 9 N -0.754 5.754 10 C 0.142 3.858 11 C 0.149 3.851 12 H 0.072 0.928 13 N -0.690 5.690 14 C 0.497 3.503 15 O -0.575 6.575 16 C 0.079 3.921 17 N -0.492 5.492 18 C 0.428 3.572 19 O -0.427 6.427 20 N -0.335 5.335 21 N -0.338 5.338 22 C 0.422 3.578 23 O -0.444 6.444 24 C -0.092 4.092 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.116 4.116 28 C -0.114 4.114 29 H 0.256 0.744 30 H 0.362 0.638 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.417 0.583 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.432 0.568 37 H 0.432 0.568 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.255 -7.755 11.280 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.784 3.216 4 H -0.245 1.245 5 H -0.217 1.217 6 H -0.155 1.155 7 C -0.359 4.359 8 H 0.080 0.920 9 N -0.400 5.400 10 C 0.015 3.985 11 C 0.043 3.957 12 H 0.091 0.909 13 N -0.342 5.342 14 C 0.283 3.717 15 O -0.454 6.454 16 C -0.047 4.047 17 N -0.212 5.212 18 C 0.117 3.883 19 O -0.230 6.230 20 N -0.178 5.178 21 N -0.182 5.182 22 C 0.111 3.889 23 O -0.247 6.247 24 C -0.112 4.112 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.153 4.153 28 C -0.151 4.151 29 H 0.065 0.935 30 H 0.195 0.805 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.255 0.745 34 H 0.192 0.808 35 H 0.166 0.834 36 H 0.294 0.706 37 H 0.295 0.705 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.793 -6.251 9.961 24.763 hybrid contribution -1.136 -0.285 0.121 1.178 sum 20.656 -6.536 10.083 23.897 Atomic orbital electron populations 1.69870 1.06958 1.26475 1.59842 1.25433 0.95996 1.00909 1.02946 0.85473 0.79244 0.80008 0.76890 1.24502 1.21737 1.15547 1.19027 0.82652 0.93391 1.40825 0.92048 1.42651 1.02371 1.04026 1.90905 1.21253 0.90021 0.87689 0.99557 1.21164 0.93035 0.91496 0.89974 0.90945 1.45670 1.63751 1.13823 1.10992 1.21051 0.76971 0.83132 0.90582 1.90783 1.53061 1.76169 1.25400 1.22109 1.06124 0.81125 0.95388 1.46598 1.06512 1.14470 1.53590 1.21255 0.79567 0.90721 0.96780 1.84868 1.41075 1.55063 1.42007 1.78204 1.10996 1.08101 1.20544 1.78252 0.94769 1.21534 1.23642 1.21394 0.85621 0.85063 0.96845 1.85147 1.09463 1.86618 1.43497 1.22037 0.95262 0.93912 0.99961 1.22449 0.98240 0.99644 0.95268 1.22482 0.93658 0.98163 1.01307 1.22311 0.98562 0.98612 0.95843 1.22096 0.93725 1.00514 0.98797 0.93480 0.80510 0.95366 0.93311 0.74470 0.80759 0.83393 0.70630 0.70518 0.89814 0.91076 0.91420 0.91475 0.90427 0.91261 0.91023 0.91935 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.36 13.97 21.65 0.30 -62.06 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 3 Si 0.95 46.80 27.45 68.60 1.88 48.69 16 4 H -0.32 -16.98 7.11 99.48 0.71 -16.28 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.23 -9.71 5.57 99.48 0.55 -9.15 16 7 C -0.23 -12.61 10.47 84.03 0.88 -11.73 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 9 N -0.75 -33.42 5.24 -343.44 -1.80 -35.22 16 10 C 0.14 4.72 5.84 86.38 0.50 5.22 16 11 C 0.15 3.74 2.04 44.99 0.09 3.83 16 12 H 0.07 2.31 6.91 -2.38 -0.02 2.29 16 13 N -0.69 -13.97 3.74 -442.52 -1.66 -15.63 16 14 C 0.50 11.74 7.02 87.66 0.62 12.36 16 15 O -0.57 -19.49 15.77 -3.03 -0.05 -19.54 16 16 C 0.08 1.25 6.50 85.63 0.56 1.81 16 17 N -0.49 -11.45 2.25 -759.26 -1.71 -13.16 16 18 C 0.43 10.32 9.15 179.72 1.65 11.97 16 19 O -0.43 -6.61 13.57 -89.44 -1.21 -7.82 16 20 N -0.33 -10.59 12.72 -173.65 -2.21 -12.80 16 21 N -0.34 -11.48 12.72 -173.66 -2.21 -13.68 16 22 C 0.42 12.25 9.15 179.71 1.65 13.90 16 23 O -0.44 -12.01 12.34 -89.40 -1.10 -13.11 16 24 C -0.09 -1.64 2.81 -10.07 -0.03 -1.67 16 25 C -0.12 -1.67 5.14 31.70 0.16 -1.51 16 26 C -0.12 -1.27 6.91 31.92 0.22 -1.05 16 27 C -0.12 -1.24 6.83 31.67 0.22 -1.03 16 28 C -0.11 -1.75 6.20 31.32 0.19 -1.56 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.36 16.08 4.71 -92.71 -0.44 15.65 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.51 7.15 -2.39 -0.02 1.49 16 33 H 0.42 5.82 6.97 -92.71 -0.65 5.17 16 34 H 0.18 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.43 3.29 9.06 -74.06 -0.67 2.62 16 37 H 0.43 6.27 9.06 -74.06 -0.67 5.60 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 0.93 5.96 -2.39 -0.01 0.91 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.05 0.94 7.09 -2.39 -0.02 0.93 16 Total: -1.00 -88.26 377.81 -4.10 -92.36 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -1.51 Total: 24.51 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 7.17 Total: 27.45 kcal Atomic # 7 Polarization: -143.26 SS G_CDS: -9.28 Total: -152.54 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -2.37 Total: -40.47 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.88 Total: 48.69 kcal Total: -88.26 -4.10 -92.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278288566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.922 kcal (2) G-P(sol) polarization free energy of solvation -88.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds