Wall clock time and date at job start Sat Apr 11 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48491 * 109.47053 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46963 * 299.99938 * 3 2 1 6 6 H 1.48503 * 109.46920 * 59.99376 * 3 2 1 7 7 C 1.38810 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99987 * 173.76421 * 9 7 2 11 11 C 1.52997 * 112.84923 * 294.86737 * 10 9 7 12 12 N 1.46508 * 109.47134 * 292.09783 * 11 10 9 13 13 C 1.34771 * 119.99956 * 180.19327 * 12 11 10 14 14 O 1.21588 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47646 * 120.00075 * 180.02562 * 13 12 11 16 16 C 1.39721 * 120.07911 * 180.02562 * 15 13 12 17 17 C 1.37710 * 119.91772 * 179.72270 * 16 15 13 18 18 C 1.39055 * 120.07722 * 0.27556 * 17 16 15 19 19 N 1.39809 * 119.91875 * 179.97438 * 18 17 16 20 20 C 1.36642 * 125.67585 * 359.69571 * 19 18 17 21 21 C 1.34810 * 108.19249 * 179.86713 * 20 19 18 22 22 C 1.40980 * 107.48365 * 0.38587 * 21 20 19 23 23 C 1.34813 * 107.48398 * 359.76005 * 22 21 20 24 24 C 1.39052 * 120.16367 * 359.97438 * 18 17 16 25 25 C 1.37711 * 120.07620 * 359.97438 * 24 18 17 26 26 C 1.53778 * 113.68837 * 66.13380 * 10 9 7 27 27 C 1.53785 * 87.08234 * 89.12785 * 26 10 9 28 28 C 1.53779 * 87.07900 * 25.43047 * 27 26 10 29 29 H 0.97001 * 120.00515 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00431 * 353.76554 * 9 7 2 31 31 H 1.09003 * 109.46795 * 172.10037 * 11 10 9 32 32 H 1.08998 * 109.47486 * 52.10135 * 11 10 9 33 33 H 0.97001 * 119.99559 * 0.20302 * 12 11 10 34 34 H 1.08004 * 120.03730 * 359.97438 * 16 15 13 35 35 H 1.07994 * 119.95899 * 180.29824 * 17 16 15 36 36 H 1.08007 * 125.90295 * 359.97438 * 20 19 18 37 37 H 1.08000 * 126.25823 * 180.14797 * 21 20 19 38 38 H 1.07997 * 126.26110 * 179.77931 * 22 21 20 39 39 H 1.08000 * 125.90297 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.96314 * 180.02562 * 24 18 17 41 41 H 1.07999 * 120.03853 * 180.02562 * 25 24 18 42 42 H 1.09000 * 113.61679 * 203.67813 * 26 10 9 43 43 H 1.08996 * 113.61681 * 334.57737 * 26 10 9 44 44 H 1.09003 * 113.61079 * 270.88510 * 27 26 10 45 45 H 1.08993 * 113.61804 * 139.98016 * 27 26 10 46 46 H 1.09005 * 113.61884 * 220.01826 * 28 27 26 47 47 H 1.08999 * 113.61596 * 89.11486 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0517 -3.6531 -0.1367 11 6 2.7383 -3.7995 -1.4961 12 7 1.7232 -3.9336 -2.5440 13 6 2.0978 -4.0799 -3.8303 14 8 3.2782 -4.1011 -4.1211 15 6 1.0748 -4.2144 -4.8864 16 6 1.4613 -4.3667 -6.2204 17 6 0.5044 -4.4976 -7.2021 18 6 -0.8451 -4.4726 -6.8676 19 7 -1.8137 -4.6052 -7.8670 20 6 -1.5657 -4.7586 -9.2019 21 6 -2.7485 -4.8552 -9.8415 22 6 -3.7649 -4.7493 -8.8703 23 6 -3.1661 -4.5972 -7.6721 24 6 -1.2335 -4.3159 -5.5417 25 6 -0.2821 -4.1855 -4.5546 26 6 2.9706 -3.9704 1.0548 27 6 1.7628 -4.6722 1.6982 28 6 1.2266 -4.8845 0.2726 29 1 -0.4851 0.8400 -0.0004 30 1 0.3599 -2.3906 0.0914 31 1 3.3725 -4.6860 -1.4892 32 1 3.3484 -2.9178 -1.6920 33 1 0.7815 -3.9168 -2.3119 34 1 2.5093 -4.3858 -6.4808 35 1 0.8025 -4.6202 -8.2328 36 1 -0.5904 -4.7977 -9.6645 37 1 -2.8913 -4.9856 -10.9040 38 1 -4.8288 -4.7840 -9.0528 39 1 -3.6684 -4.4883 -6.7223 40 1 -2.2825 -4.2974 -5.2855 41 1 -0.5845 -4.0643 -3.5250 42 1 3.7882 -4.6475 0.8075 43 1 3.3020 -3.0858 1.5984 44 1 1.1441 -4.0095 2.3033 45 1 2.0187 -5.5994 2.2110 46 1 0.1501 -4.7377 0.1846 47 1 1.5674 -5.8114 -0.1886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280491072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:18 Heat of formation + Delta-G solvation = 64.760274 kcal Electronic energy + Delta-G solvation = -28375.529571 eV Core-core repulsion = 24524.570016 eV Total energy + Delta-G solvation = -3850.959555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.62337 -41.24091 -40.17683 -39.05707 -35.47430 -35.21862 -34.23913 -32.43013 -31.92093 -30.46453 -29.79344 -28.44347 -26.72645 -25.80104 -24.85807 -24.05490 -23.06845 -21.95959 -20.91603 -20.84347 -19.91264 -19.59799 -19.13102 -18.67857 -17.21647 -16.80828 -16.27321 -16.16538 -16.00082 -15.90323 -15.86445 -15.69690 -15.28774 -15.04758 -14.87618 -14.55470 -14.41869 -14.18966 -13.82783 -13.59070 -13.39276 -13.22277 -13.08574 -12.97576 -12.95969 -12.93806 -12.55975 -12.19391 -12.15112 -11.94442 -11.61278 -11.48969 -11.15807 -10.92429 -10.90645 -10.75183 -10.23397 -10.02132 -9.23120 -9.05735 -8.98798 -7.94925 -5.21122 -0.53427 0.18594 1.20155 1.42692 1.45812 1.52791 1.79880 1.94391 2.04825 2.22614 2.53705 2.77306 3.37264 3.51708 3.65146 3.69780 3.74313 3.81872 3.98105 3.99845 4.05389 4.10866 4.16379 4.22990 4.27502 4.43897 4.57774 4.62805 4.71486 4.82502 4.83777 4.88764 4.91792 4.96245 4.99715 5.04404 5.13283 5.21184 5.30161 5.30862 5.34449 5.42215 5.46972 5.54755 5.62821 5.70720 5.94933 6.20094 6.29786 6.41064 6.56780 7.19744 7.36330 8.09647 8.33684 9.27483 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002675 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.800751 B =10465.833643 C =11324.653620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.065 4.065 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.220 4.220 8 H 0.065 0.935 9 N -0.704 5.704 10 C 0.158 3.842 11 C 0.127 3.873 12 N -0.694 5.694 13 C 0.550 3.450 14 O -0.587 6.587 15 C -0.162 4.162 16 C -0.037 4.037 17 C -0.147 4.147 18 C 0.160 3.840 19 N -0.407 5.407 20 C -0.029 4.029 21 C -0.199 4.199 22 C -0.200 4.200 23 C -0.030 4.030 24 C -0.148 4.148 25 C -0.051 4.051 26 C -0.150 4.150 27 C -0.120 4.120 28 C -0.128 4.128 29 H 0.249 0.751 30 H 0.378 0.622 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.407 0.593 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.184 0.816 40 H 0.158 0.842 41 H 0.147 0.853 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -15.144 -13.489 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.352 4.352 8 H 0.083 0.917 9 N -0.344 5.344 10 C 0.067 3.933 11 C 0.001 3.999 12 N -0.343 5.343 13 C 0.338 3.662 14 O -0.470 6.470 15 C -0.165 4.165 16 C -0.057 4.057 17 C -0.167 4.167 18 C 0.066 3.934 19 N -0.079 5.079 20 C -0.155 4.155 21 C -0.223 4.223 22 C -0.224 4.224 23 C -0.155 4.155 24 C -0.167 4.167 25 C -0.070 4.070 26 C -0.190 4.190 27 C -0.158 4.158 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.211 0.789 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.243 0.757 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.203 0.797 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.175 0.825 41 H 0.164 0.836 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.254 -14.997 -13.466 20.599 hybrid contribution -0.196 1.607 0.281 1.643 sum -4.451 -13.390 -13.184 19.311 Atomic orbital electron populations 1.69758 1.05938 1.25578 1.59745 1.25289 0.96198 1.00089 1.04224 0.85363 0.78327 0.81391 0.76476 1.19841 1.22660 1.22077 1.19313 0.90970 0.84921 1.39991 0.91662 1.42102 1.05766 0.99827 1.86682 1.21116 0.94337 0.87037 0.90850 1.21746 0.90583 0.99719 0.87831 1.45665 1.11155 1.71642 1.05856 1.18566 0.88270 0.76125 0.83203 1.90714 1.19706 1.53507 1.83036 1.19984 0.93535 1.08748 0.94252 1.21165 1.00700 0.93287 0.90518 1.20939 0.89751 1.04637 1.01340 1.18236 0.88719 0.98122 0.88333 1.41791 1.05480 1.54638 1.06039 1.22433 1.01618 1.09727 0.81674 1.21378 0.91760 1.08621 1.00550 1.21380 1.00417 1.08494 0.92076 1.22422 0.81440 1.09978 1.01669 1.20955 1.01565 1.04134 0.90049 1.21322 0.90833 0.94280 1.00557 1.23338 0.97579 1.00130 0.97950 1.22558 0.97002 1.00206 0.96021 1.23114 0.99693 0.96901 0.96818 0.94223 0.78867 0.90918 0.94941 0.75677 0.83980 0.82298 0.79724 0.82381 0.82487 0.79936 0.82484 0.83579 0.88777 0.93405 0.91979 0.89626 0.91272 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.60 13.07 21.65 0.28 -55.32 16 2 C -0.07 -3.60 5.50 84.86 0.47 -3.14 16 3 Si 0.95 45.98 29.55 68.60 2.03 48.01 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 7 C -0.22 -11.50 9.05 84.03 0.76 -10.74 16 8 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.70 -31.58 5.19 -300.97 -1.56 -33.15 16 10 C 0.16 5.49 0.80 4.13 0.00 5.49 16 11 C 0.13 4.54 5.08 86.38 0.44 4.98 16 12 N -0.69 -22.86 5.37 -466.15 -2.50 -25.37 16 13 C 0.55 18.94 7.77 86.73 0.67 19.61 16 14 O -0.59 -24.05 16.34 -3.99 -0.07 -24.12 16 15 C -0.16 -4.49 5.88 -20.08 -0.12 -4.61 16 16 C -0.04 -0.91 9.58 22.50 0.22 -0.70 16 17 C -0.15 -2.95 9.43 22.34 0.21 -2.74 16 18 C 0.16 3.30 6.62 38.26 0.25 3.56 16 19 N -0.41 -7.94 2.97 -346.57 -1.03 -8.97 16 20 C -0.03 -0.50 10.73 83.16 0.89 0.39 16 21 C -0.20 -3.29 10.86 22.15 0.24 -3.05 16 22 C -0.20 -3.37 10.86 22.16 0.24 -3.13 16 23 C -0.03 -0.53 10.73 83.16 0.89 0.36 16 24 C -0.15 -2.98 9.43 22.34 0.21 -2.77 16 25 C -0.05 -1.17 9.53 22.50 0.21 -0.96 16 26 C -0.15 -4.76 7.28 31.12 0.23 -4.54 16 27 C -0.12 -3.32 7.99 31.12 0.25 -3.07 16 28 C -0.13 -3.40 7.04 31.12 0.22 -3.18 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.38 18.08 7.87 -92.71 -0.73 17.35 16 31 H 0.07 2.35 8.01 -2.39 -0.02 2.33 16 32 H 0.03 1.40 7.80 -2.39 -0.02 1.38 16 33 H 0.41 12.11 6.32 -92.71 -0.59 11.52 16 34 H 0.14 3.47 7.64 -2.91 -0.02 3.45 16 35 H 0.16 2.28 6.68 -2.91 -0.02 2.26 16 36 H 0.19 2.18 6.99 -2.91 -0.02 2.16 16 37 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.18 2.40 6.99 -2.91 -0.02 2.38 16 40 H 0.16 2.41 6.68 -2.91 -0.02 2.39 16 41 H 0.15 3.06 6.39 -2.91 -0.02 3.04 16 42 H 0.09 2.52 8.01 -2.39 -0.02 2.50 16 43 H 0.05 1.77 7.87 -2.39 -0.02 1.75 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.83 8.09 -2.38 -0.02 1.81 16 47 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 Total: -1.00 -68.54 389.94 3.13 -65.40 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -0.31 Total: 41.73 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.29 Total: -8.23 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -4.81 Total: -122.80 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -68.54 3.13 -65.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280491072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.165 kcal (2) G-P(sol) polarization free energy of solvation -68.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds