Wall clock time and date at job start Sat Apr 11 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48500 * 109.46742 * 239.99872 * 3 2 1 5 5 H 1.48497 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46751 * 120.00520 * 3 2 1 7 7 C 1.38813 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99990 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46801 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46692 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00066 * 262.86591 * 13 12 11 15 15 C 1.50699 * 109.47138 * 269.99845 * 14 13 12 16 16 C 1.38241 * 119.99658 * 269.72857 * 15 14 13 17 17 C 1.38236 * 119.99899 * 179.76725 * 16 15 14 18 18 C 1.38244 * 119.99751 * 0.47727 * 17 16 15 19 19 C 1.38233 * 119.99996 * 359.79720 * 18 17 16 20 20 C 1.38229 * 120.00290 * 89.99687 * 15 14 13 21 21 C 1.34780 * 120.00270 * 82.86064 * 13 12 11 22 22 O 1.21517 * 120.00003 * 183.19064 * 21 13 12 23 23 C 1.48173 * 119.99514 * 3.18824 * 21 13 12 24 24 C 1.39312 * 119.71594 * 173.19963 * 23 21 13 25 25 C 1.38595 * 119.05412 * 179.97438 * 24 23 21 26 26 C 1.38627 * 118.48995 * 359.97438 * 25 24 23 27 27 C 1.38560 * 119.35105 * 0.25575 * 26 25 24 28 28 N 1.31522 * 120.90171 * 359.48817 * 27 26 25 29 29 H 0.96993 * 119.99821 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99376 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47332 * 60.00165 * 10 9 7 32 32 H 1.09001 * 109.47081 * 299.99322 * 10 9 7 33 33 H 1.08993 * 109.47183 * 59.99902 * 11 10 9 34 34 H 1.08999 * 109.47114 * 299.99548 * 11 10 9 35 35 H 1.08999 * 109.47751 * 59.99944 * 12 11 10 36 36 H 1.09002 * 109.47475 * 299.99865 * 12 11 10 37 37 H 1.09004 * 109.47459 * 29.99483 * 14 13 12 38 38 H 1.09003 * 109.47657 * 149.99804 * 14 13 12 39 39 H 1.07996 * 120.00242 * 359.97438 * 16 15 14 40 40 H 1.07995 * 120.00480 * 180.25284 * 17 16 15 41 41 H 1.07996 * 119.99802 * 179.77052 * 18 17 16 42 42 H 1.07995 * 120.00133 * 179.97438 * 19 18 17 43 43 H 1.08001 * 119.99834 * 0.02562 * 20 15 14 44 44 H 1.07991 * 120.47532 * 0.02779 * 24 23 21 45 45 H 1.07995 * 120.75182 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.32671 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.55166 * 179.74929 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0018 13 7 0.8769 -7.2583 -0.0018 14 6 0.5211 -7.9178 1.2570 15 6 1.4707 -9.0600 1.5115 16 6 1.1729 -10.3246 1.0391 17 6 2.0462 -11.3714 1.2684 18 6 3.2125 -11.1556 1.9787 19 6 3.5074 -9.8923 2.4559 20 6 2.6366 -8.8444 2.2221 21 6 0.3283 -7.6760 -1.1599 22 8 -0.5046 -8.5607 -1.1534 23 6 0.7409 -7.0562 -2.4410 24 6 0.2793 -7.5851 -3.6443 25 6 0.6734 -6.9943 -4.8344 26 6 1.5153 -5.8944 -4.7796 27 6 1.9395 -5.4245 -3.5471 28 7 1.5461 -6.0013 -2.4325 29 1 -0.4849 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6847 -3.7146 -0.8906 33 1 0.4375 -4.7618 -0.8913 34 1 0.4369 -4.7622 0.8886 35 1 2.4555 -6.2030 0.8881 36 1 2.4556 -6.2020 -0.8918 37 1 0.5884 -7.2003 2.0748 38 1 -0.4976 -8.2999 1.1918 39 1 0.2598 -10.4941 0.4881 40 1 1.8157 -12.3585 0.8959 41 1 3.8929 -11.9742 2.1610 42 1 4.4183 -9.7237 3.0111 43 1 2.8668 -7.8574 2.5952 44 1 -0.3770 -8.4427 -3.6496 45 1 0.3316 -7.3815 -5.7829 46 1 1.8412 -5.4112 -5.6889 47 1 2.5987 -4.5703 -3.5008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283351555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:38 Heat of formation + Delta-G solvation = 41.314793 kcal Electronic energy + Delta-G solvation = -28901.369357 eV Core-core repulsion = 25049.393129 eV Total energy + Delta-G solvation = -3851.976228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90118 -40.45370 -39.54222 -37.73361 -36.40896 -34.20527 -33.57424 -32.81951 -32.07773 -31.78619 -30.97087 -27.75830 -26.96748 -25.17606 -24.42883 -24.33966 -23.40653 -22.47565 -22.41799 -20.80365 -19.10704 -18.44139 -18.16511 -17.65769 -17.11418 -16.62883 -16.57159 -16.56755 -16.07207 -15.89159 -15.81456 -15.58778 -15.23752 -15.06869 -14.72100 -14.50184 -14.28899 -14.17355 -13.93757 -13.49662 -13.39178 -13.36184 -12.93833 -12.85335 -12.76061 -12.67262 -12.31023 -12.15023 -11.99468 -11.87734 -11.79589 -11.73554 -11.34805 -10.90984 -10.76757 -10.25065 -10.14913 -9.82158 -9.71101 -9.64271 -8.95060 -7.91127 -5.19849 -0.31964 0.29082 0.34623 0.50089 1.49059 1.52591 1.58617 1.68652 1.94911 2.59450 2.86477 2.93582 3.08160 3.42684 3.65753 3.82039 3.91433 4.00436 4.04542 4.09110 4.11847 4.13926 4.15971 4.27469 4.29659 4.46170 4.49743 4.56921 4.65057 4.69896 4.74160 4.76699 4.79650 4.91954 5.07481 5.08594 5.13437 5.16506 5.19183 5.35786 5.45500 5.54009 5.56150 5.58808 5.61262 5.68932 5.76793 6.10790 6.25247 6.30808 6.73663 7.06110 7.36276 8.14098 8.36693 9.32801 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.003159 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.979750 B = 8860.616834 C =10758.555634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.107 4.107 12 C 0.119 3.881 13 N -0.582 5.582 14 C 0.149 3.851 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.112 4.112 21 C 0.565 3.435 22 O -0.565 6.565 23 C 0.047 3.953 24 C -0.122 4.122 25 C -0.078 4.078 26 C -0.136 4.136 27 C 0.080 3.920 28 N -0.455 5.455 29 H 0.250 0.750 30 H 0.369 0.631 31 H 0.020 0.980 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.145 0.855 45 H 0.175 0.825 46 H 0.173 0.827 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -23.278 -4.711 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.390 5.390 10 C 0.038 3.962 11 C -0.146 4.146 12 C -0.004 4.004 13 N -0.311 5.311 14 C 0.027 3.973 15 C -0.116 4.116 16 C -0.134 4.134 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.131 4.131 21 C 0.354 3.646 22 O -0.445 6.445 23 C -0.090 4.090 24 C -0.143 4.143 25 C -0.103 4.103 26 C -0.156 4.156 27 C -0.079 4.079 28 N -0.167 5.167 29 H 0.058 0.942 30 H 0.200 0.800 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.193 0.807 46 H 0.190 0.810 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.195 -23.335 -3.851 24.721 hybrid contribution -0.752 0.900 -0.624 1.329 sum 6.442 -22.435 -4.475 23.766 Atomic orbital electron populations 1.69834 1.06788 1.26007 1.59905 1.25594 0.96339 1.01210 1.03994 0.85195 0.77135 0.79026 0.78327 1.20070 1.22479 1.20363 1.19637 0.91579 0.85244 1.40714 0.90304 1.42618 1.05464 1.01478 1.89404 1.20593 0.93687 0.84021 0.97874 1.21731 0.98378 0.94321 1.00181 1.22049 0.90719 0.82586 1.05008 1.47920 1.44008 1.33180 1.05947 1.20496 0.97732 0.93286 0.85771 1.20207 0.96958 0.94746 0.99644 1.21233 0.99960 0.93083 0.99089 1.21406 0.94844 0.99352 0.99362 1.21507 0.97076 0.97918 0.97345 1.21466 1.00065 0.92847 1.00133 1.21306 0.93485 1.00145 0.98141 1.18289 0.80677 0.81725 0.83945 1.90697 1.34030 1.32608 1.87129 1.21091 0.98701 0.95320 0.93860 1.22226 0.98984 1.00877 0.92178 1.22006 0.94937 0.94435 0.98962 1.22765 0.96383 0.96171 1.00285 1.23370 0.97842 0.98641 0.88044 1.68058 1.09744 1.07206 1.31689 0.94172 0.80010 0.96174 0.95137 0.93350 0.93998 0.89890 0.86278 0.88041 0.90073 0.86969 0.84596 0.83722 0.83815 0.84893 0.83678 0.80724 0.80999 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -38.72 5.60 -343.46 -1.92 -40.64 16 10 C 0.16 6.55 6.26 86.38 0.54 7.09 16 11 C -0.11 -3.66 4.99 30.60 0.15 -3.51 16 12 C 0.12 3.26 4.98 86.38 0.43 3.69 16 13 N -0.58 -16.29 2.47 -829.18 -2.05 -18.35 16 14 C 0.15 3.72 5.52 85.63 0.47 4.19 16 15 C -0.11 -2.67 5.46 -19.87 -0.11 -2.78 16 16 C -0.11 -2.72 9.70 22.27 0.22 -2.50 16 17 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 18 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 19 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 20 C -0.11 -2.26 9.70 22.27 0.22 -2.05 16 21 C 0.57 17.59 7.60 86.88 0.66 18.25 16 22 O -0.57 -19.45 15.61 -3.77 -0.06 -19.51 16 23 C 0.05 1.33 6.52 41.91 0.27 1.60 16 24 C -0.12 -2.80 9.63 22.61 0.22 -2.58 16 25 C -0.08 -1.29 10.17 22.45 0.23 -1.06 16 26 C -0.14 -2.28 10.11 22.44 0.23 -2.05 16 27 C 0.08 1.82 11.18 84.82 0.95 2.76 16 28 N -0.45 -12.51 4.34 -184.91 -0.80 -13.31 16 29 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.37 20.80 7.67 -92.71 -0.71 20.08 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.84 6.75 -2.39 -0.02 1.82 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.98 8.02 -2.39 -0.02 1.96 16 36 H 0.12 3.31 5.24 -3.03 -0.02 3.30 16 37 H 0.10 2.24 8.02 -2.39 -0.02 2.22 16 38 H 0.08 2.19 7.32 -2.39 -0.02 2.17 16 39 H 0.11 2.90 7.76 -2.91 -0.02 2.88 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.15 3.19 7.66 -2.92 -0.02 3.17 16 45 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 46 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 47 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -73.32 394.82 4.19 -69.14 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.26 Total: 36.76 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.45 Total: -1.78 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -4.50 Total: -132.72 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.32 4.19 -69.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283351555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.451 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds