Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47330 * 240.00185 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47283 * 119.99745 * 3 2 1 7 7 C 1.39936 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99447 * 197.88106 * 7 2 1 9 9 C 1.41434 * 119.99881 * 17.88164 * 7 2 1 10 10 C 1.40794 * 120.17402 * 204.44038 * 9 7 2 11 11 C 1.37704 * 120.03924 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41182 * 359.70062 * 11 10 9 13 13 C 1.39885 * 120.35956 * 0.55732 * 12 11 10 14 14 C 1.47887 * 120.02466 * 179.74002 * 13 12 11 15 15 O 1.21547 * 119.99246 * 179.72575 * 14 13 12 16 16 N 1.34777 * 120.00070 * 359.72692 * 14 13 12 17 17 C 1.46498 * 119.99638 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47125 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47366 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47366 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47270 * 180.02562 * 20 19 18 22 22 C 1.38877 * 120.75034 * 269.97978 * 21 20 19 23 23 C 1.38015 * 119.33465 * 180.02562 * 22 21 20 24 24 N 1.31980 * 120.85559 * 359.97438 * 23 22 21 25 25 C 1.32391 * 121.62051 * 359.73395 * 24 23 22 26 26 N 1.39004 * 119.70796 * 180.28652 * 25 24 23 27 27 C 1.38303 * 120.74455 * 89.99954 * 21 20 19 28 28 C 1.39031 * 119.94674 * 359.46863 * 13 12 11 29 29 H 0.97000 * 119.99817 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.97852 * 0.02906 * 10 9 7 31 31 H 1.08003 * 119.79596 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.82283 * 180.27467 * 12 11 10 33 33 H 0.96999 * 119.99969 * 359.97438 * 16 14 13 34 34 H 1.09006 * 109.47112 * 60.00584 * 17 16 14 35 35 H 1.09000 * 109.47368 * 300.00051 * 17 16 14 36 36 H 1.09000 * 109.46680 * 59.99924 * 18 17 16 37 37 H 1.09000 * 109.47104 * 300.00292 * 18 17 16 38 38 H 1.09006 * 109.47054 * 60.00552 * 19 18 17 39 39 H 1.09000 * 109.47186 * 300.00166 * 19 18 17 40 40 H 1.09000 * 109.46680 * 59.99849 * 20 19 18 41 41 H 1.09000 * 109.47104 * 300.00217 * 20 19 18 42 42 H 1.08004 * 120.33436 * 0.04463 * 22 21 20 43 43 H 1.08005 * 119.57740 * 179.97438 * 23 22 21 44 44 H 0.96997 * 120.00187 * 180.23648 * 26 25 24 45 45 H 0.96998 * 119.99429 * 0.24460 * 26 25 24 46 46 H 1.07993 * 120.45545 * 359.96153 * 27 21 20 47 47 H 1.07995 * 120.20419 * 180.23266 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3519 -2.4070 -0.3772 10 6 1.8262 -3.6500 0.0835 11 6 1.1857 -4.8119 -0.2854 12 6 0.0709 -4.7676 -1.1038 13 6 -0.4117 -3.5423 -1.5757 14 6 -1.6003 -3.5041 -2.4547 15 8 -2.0221 -2.4387 -2.8603 16 7 -2.2159 -4.6505 -2.8059 17 6 -3.3937 -4.6125 -3.6762 18 6 -3.8946 -6.0376 -3.9191 19 6 -5.1242 -5.9980 -4.8286 20 6 -5.6247 -7.4232 -5.0720 21 6 -6.8356 -7.3843 -5.9682 22 6 -8.1127 -7.2819 -5.4323 23 6 -9.2011 -7.2491 -6.2803 24 7 -9.0419 -7.3133 -7.5889 25 6 -7.8409 -7.4057 -8.1383 26 7 -7.7189 -7.4648 -9.5217 27 6 -6.7000 -7.4501 -7.3430 28 6 0.2238 -2.3601 -1.2130 29 1 -0.4850 0.8401 -0.0004 30 1 2.6929 -3.6923 0.7265 31 1 1.5531 -5.7633 0.0699 32 1 -0.4268 -5.6844 -1.3836 33 1 -1.8790 -5.5007 -2.4825 34 1 -3.1271 -4.1543 -4.6287 35 1 -4.1796 -4.0272 -3.1988 36 1 -4.1610 -6.4963 -2.9669 37 1 -3.1085 -6.6225 -4.3968 38 1 -4.8573 -5.5396 -5.7808 39 1 -5.9104 -5.4130 -4.3513 40 1 -5.8915 -7.8821 -4.1200 41 1 -4.8384 -8.0079 -5.5494 42 1 -8.2527 -7.2281 -4.3628 43 1 -10.1961 -7.1699 -5.8677 44 1 -6.8413 -7.5360 -9.9286 45 1 -8.5115 -7.4347 -10.0801 46 1 -5.7217 -7.5299 -7.7934 47 1 -0.1475 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001306091289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = -5.977881 kcal Electronic energy + Delta-G solvation = -26640.973480 eV Core-core repulsion = 22786.946489 eV Total energy + Delta-G solvation = -3854.026992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51671 -39.20310 -37.16362 -36.50246 -35.08694 -34.20927 -33.71978 -32.16780 -30.23797 -29.50475 -29.43981 -28.30188 -25.38570 -24.58199 -23.49099 -22.34186 -21.57752 -21.25414 -20.88108 -19.41476 -17.78075 -17.72173 -17.25927 -16.22732 -16.12891 -15.97792 -15.52548 -15.24594 -15.05199 -14.65364 -14.61596 -14.51964 -14.10781 -13.78001 -13.52984 -13.16741 -13.03965 -12.95342 -12.56985 -12.45377 -12.23457 -11.68559 -11.65636 -11.51046 -11.43781 -11.15084 -11.08114 -11.05858 -10.82671 -10.74060 -10.50314 -10.03289 -9.77406 -9.73708 -9.69472 -9.20961 -9.00681 -8.64612 -8.20310 -7.63126 -7.52367 -6.80308 -4.41678 0.98660 1.16576 2.21613 2.82132 3.07406 3.09090 3.16636 3.17331 3.58806 3.71154 3.87653 3.92184 4.24637 4.41606 4.63576 4.67897 4.70131 4.85044 4.93868 4.99820 5.09958 5.26278 5.31971 5.43074 5.50651 5.56516 5.60114 5.66220 5.70482 5.70720 5.93063 6.04838 6.06554 6.16710 6.19498 6.27195 6.33194 6.71690 6.87724 6.90558 6.98695 7.02190 7.08650 7.21159 7.37895 7.70092 7.75922 7.92606 7.93611 8.10102 8.19372 8.50388 8.79881 8.83384 8.96689 10.14376 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.001581 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.857371 B =17707.736652 C =18399.283939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.563 3.437 15 O -0.547 6.547 16 N -0.738 5.738 17 C 0.121 3.879 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.083 4.083 21 C 0.007 3.993 22 C -0.231 4.231 23 C 0.148 3.852 24 N -0.552 5.552 25 C 0.402 3.598 26 N -0.855 5.855 27 C -0.238 4.238 28 C -0.093 4.093 29 H 0.285 0.715 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.399 0.601 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.407 0.593 45 H 0.403 0.597 46 H 0.129 0.871 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -15.102 -12.493 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.132 4.132 14 C 0.353 3.647 15 O -0.425 6.425 16 N -0.392 5.392 17 C -0.003 4.003 18 C -0.168 4.168 19 C -0.147 4.147 20 C -0.121 4.121 21 C -0.001 4.001 22 C -0.254 4.254 23 C -0.008 4.008 24 N -0.271 5.271 25 C 0.165 3.835 26 N -0.398 5.398 27 C -0.263 4.263 28 C -0.113 4.113 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.234 0.766 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.237 0.763 45 H 0.232 0.768 46 H 0.147 0.853 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.689 -14.134 -13.285 24.332 hybrid contribution 1.174 0.227 0.362 1.250 sum -13.515 -13.907 -12.923 23.304 Atomic orbital electron populations 1.69785 1.07586 1.29905 1.33415 1.25971 0.94773 1.01561 0.92313 0.86319 0.80109 0.80085 0.79978 1.18717 1.20225 1.18953 1.19562 0.98221 0.91090 1.40040 0.90096 1.17601 0.91196 0.92454 0.89143 1.21099 1.03557 0.92761 1.05822 1.20430 0.96009 0.96719 0.98443 1.20334 1.01291 0.94608 1.07658 1.19491 0.96593 0.95328 1.01751 1.18852 0.83301 0.82881 0.79639 1.90694 1.66337 1.29908 1.55570 1.45952 1.31092 1.09702 1.52494 1.21221 0.88100 0.96346 0.94656 1.21800 0.97820 0.96755 1.00438 1.21447 0.97377 0.95631 1.00228 1.20681 0.94467 0.98087 0.98829 1.20055 0.95161 0.91617 0.93289 1.21760 0.92759 1.09534 1.01315 1.22371 0.99045 0.92054 0.87368 1.67162 1.24117 1.21385 1.14455 1.18353 0.89316 0.90059 0.85739 1.42211 1.11726 1.83189 1.02673 1.21218 0.98311 1.12974 0.93755 1.21636 0.96493 0.96476 0.96712 0.90360 0.88623 0.88915 0.89254 0.76610 0.91994 0.91893 0.91090 0.91188 0.91391 0.91202 0.90233 0.90478 0.85054 0.82827 0.76287 0.76840 0.85322 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.82 10.96 55.55 0.61 -20.21 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.10 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 10 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 11 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 12 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C 0.56 12.39 7.77 -12.31 -0.10 12.29 16 15 O -0.55 -13.91 16.33 5.32 0.09 -13.82 16 16 N -0.74 -12.04 5.51 -61.23 -0.34 -12.38 16 17 C 0.12 1.62 5.67 -4.04 -0.02 1.59 16 18 C -0.13 -1.17 5.33 -26.73 -0.14 -1.31 16 19 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 20 C -0.08 -0.57 5.39 -27.88 -0.15 -0.72 16 21 C 0.01 0.06 5.17 -104.36 -0.54 -0.48 16 22 C -0.23 -1.87 9.81 -39.43 -0.39 -2.26 16 23 C 0.15 1.28 11.17 -17.57 -0.20 1.09 16 24 N -0.55 -5.67 10.39 -12.44 -0.13 -5.80 16 25 C 0.40 3.65 7.75 -155.02 -1.20 2.45 16 26 N -0.85 -5.11 9.07 31.13 0.28 -4.83 16 27 C -0.24 -1.98 9.64 -39.22 -0.38 -2.36 16 28 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 29 H 0.29 6.99 8.30 -40.82 -0.34 6.65 16 30 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 32 H 0.09 1.52 6.38 -52.48 -0.33 1.18 16 33 H 0.40 5.52 6.49 -40.82 -0.26 5.26 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.08 0.48 8.10 -51.93 -0.42 0.05 16 42 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 44 H 0.41 1.46 8.82 -40.82 -0.36 1.10 16 45 H 0.40 2.06 8.95 -40.82 -0.37 1.70 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 3.87 5.74 -52.49 -0.30 3.57 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -32.50 397.21 -11.56 -44.06 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.67 Total: 11.88 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -6.36 Total: -18.67 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.42 Total: -43.22 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.50 -11.56 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306091289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.083 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds