Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47330 * 240.00185 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47283 * 119.99745 * 3 2 1 7 7 C 1.39936 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99447 * 197.88106 * 7 2 1 9 9 C 1.41434 * 119.99881 * 17.88164 * 7 2 1 10 10 C 1.40794 * 120.17402 * 204.44038 * 9 7 2 11 11 C 1.37704 * 120.03924 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41182 * 359.70062 * 11 10 9 13 13 C 1.39885 * 120.35956 * 0.55732 * 12 11 10 14 14 C 1.47887 * 120.02466 * 179.74002 * 13 12 11 15 15 O 1.21547 * 119.99246 * 179.72575 * 14 13 12 16 16 N 1.34777 * 120.00070 * 359.72692 * 14 13 12 17 17 C 1.46498 * 119.99638 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47125 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47366 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47366 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47270 * 180.02562 * 20 19 18 22 22 C 1.38877 * 120.75034 * 269.97978 * 21 20 19 23 23 C 1.38015 * 119.33465 * 180.02562 * 22 21 20 24 24 N 1.31980 * 120.85559 * 359.97438 * 23 22 21 25 25 C 1.32391 * 121.62051 * 359.73395 * 24 23 22 26 26 N 1.39004 * 119.70796 * 180.28652 * 25 24 23 27 27 C 1.38303 * 120.74455 * 89.99954 * 21 20 19 28 28 C 1.39031 * 119.94674 * 359.46863 * 13 12 11 29 29 H 0.97000 * 119.99817 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.97852 * 0.02906 * 10 9 7 31 31 H 1.08003 * 119.79596 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.82283 * 180.27467 * 12 11 10 33 33 H 0.96999 * 119.99969 * 359.97438 * 16 14 13 34 34 H 1.09006 * 109.47112 * 60.00584 * 17 16 14 35 35 H 1.09000 * 109.47368 * 300.00051 * 17 16 14 36 36 H 1.09000 * 109.46680 * 59.99924 * 18 17 16 37 37 H 1.09000 * 109.47104 * 300.00292 * 18 17 16 38 38 H 1.09006 * 109.47054 * 60.00552 * 19 18 17 39 39 H 1.09000 * 109.47186 * 300.00166 * 19 18 17 40 40 H 1.09000 * 109.46680 * 59.99849 * 20 19 18 41 41 H 1.09000 * 109.47104 * 300.00217 * 20 19 18 42 42 H 1.08004 * 120.33436 * 0.04463 * 22 21 20 43 43 H 1.08005 * 119.57740 * 179.97438 * 23 22 21 44 44 H 0.96997 * 120.00187 * 180.23648 * 26 25 24 45 45 H 0.96998 * 119.99429 * 0.24460 * 26 25 24 46 46 H 1.07993 * 120.45545 * 359.96153 * 27 21 20 47 47 H 1.07995 * 120.20419 * 180.23266 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2867 9 6 1.3519 -2.4070 -0.3772 10 6 1.8262 -3.6500 0.0835 11 6 1.1857 -4.8119 -0.2854 12 6 0.0709 -4.7676 -1.1038 13 6 -0.4117 -3.5423 -1.5757 14 6 -1.6003 -3.5041 -2.4547 15 8 -2.0221 -2.4387 -2.8603 16 7 -2.2159 -4.6505 -2.8059 17 6 -3.3937 -4.6125 -3.6762 18 6 -3.8946 -6.0376 -3.9191 19 6 -5.1242 -5.9980 -4.8286 20 6 -5.6247 -7.4232 -5.0720 21 6 -6.8356 -7.3843 -5.9682 22 6 -8.1127 -7.2819 -5.4323 23 6 -9.2011 -7.2491 -6.2803 24 7 -9.0419 -7.3133 -7.5889 25 6 -7.8409 -7.4057 -8.1383 26 7 -7.7189 -7.4648 -9.5217 27 6 -6.7000 -7.4501 -7.3430 28 6 0.2238 -2.3601 -1.2130 29 1 -0.4850 0.8401 -0.0004 30 1 2.6929 -3.6923 0.7265 31 1 1.5531 -5.7633 0.0699 32 1 -0.4268 -5.6844 -1.3836 33 1 -1.8790 -5.5007 -2.4825 34 1 -3.1271 -4.1543 -4.6287 35 1 -4.1796 -4.0272 -3.1988 36 1 -4.1610 -6.4963 -2.9669 37 1 -3.1085 -6.6225 -4.3968 38 1 -4.8573 -5.5396 -5.7808 39 1 -5.9104 -5.4130 -4.3513 40 1 -5.8915 -7.8821 -4.1200 41 1 -4.8384 -8.0079 -5.5494 42 1 -8.2527 -7.2281 -4.3628 43 1 -10.1961 -7.1699 -5.8677 44 1 -6.8413 -7.5360 -9.9286 45 1 -8.5115 -7.4347 -10.0801 46 1 -5.7217 -7.5299 -7.7934 47 1 -0.1475 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001306091289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = -25.947765 kcal Electronic energy + Delta-G solvation = -26641.839440 eV Core-core repulsion = 22786.946489 eV Total energy + Delta-G solvation = -3854.892951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11062 -40.87324 -38.86342 -37.42677 -35.97264 -35.58784 -35.03700 -33.18876 -31.88783 -31.26293 -30.06448 -29.26003 -27.20575 -25.64147 -24.16320 -23.68803 -22.84613 -22.43272 -21.90353 -21.03199 -19.47011 -18.33139 -18.02400 -17.72672 -17.14336 -16.84184 -16.75619 -16.69413 -16.37582 -15.97003 -15.51673 -15.41418 -15.18766 -15.02828 -14.97494 -14.42260 -14.26310 -14.14127 -14.05406 -13.57080 -13.44480 -12.95224 -12.87445 -12.79873 -12.52834 -12.44704 -12.25407 -12.21100 -12.15879 -11.89279 -11.62799 -11.50405 -11.46819 -11.06340 -10.79747 -10.39328 -10.34028 -10.13131 -9.46144 -9.37512 -8.75341 -8.66485 -6.37920 0.38350 0.38954 0.56053 1.02119 1.35976 1.47822 1.50646 2.10834 2.19299 2.28550 2.69173 2.79248 3.00675 3.64839 3.70750 3.84583 3.90726 4.03667 4.08613 4.27811 4.30855 4.39636 4.41941 4.44068 4.61037 4.61817 4.66195 4.73751 4.84198 4.89797 4.91560 4.98798 5.08527 5.09865 5.14341 5.20835 5.29052 5.32045 5.40992 5.50351 5.54156 5.62118 5.79521 5.87710 5.93524 6.06130 6.29611 6.42613 6.52768 6.59686 6.71311 6.88098 6.95481 7.33498 7.39163 8.30115 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.001581 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.857371 B =17707.736652 C =18399.283939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.196 4.196 13 C -0.141 4.141 14 C 0.557 3.443 15 O -0.593 6.593 16 N -0.712 5.712 17 C 0.116 3.884 18 C -0.116 4.116 19 C -0.104 4.104 20 C -0.075 4.075 21 C -0.002 4.002 22 C -0.238 4.238 23 C 0.134 3.866 24 N -0.581 5.581 25 C 0.385 3.615 26 N -0.846 5.846 27 C -0.247 4.247 28 C -0.133 4.133 29 H 0.286 0.714 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.415 0.585 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.147 0.853 43 H 0.172 0.828 44 H 0.418 0.582 45 H 0.406 0.594 46 H 0.144 0.856 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.038 -18.069 -12.453 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.528 4.528 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.237 4.237 11 C -0.113 4.113 12 C -0.215 4.215 13 C -0.144 4.144 14 C 0.347 3.653 15 O -0.475 6.475 16 N -0.365 5.365 17 C -0.007 4.007 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.112 4.112 21 C -0.010 4.010 22 C -0.261 4.261 23 C -0.022 4.022 24 N -0.301 5.301 25 C 0.147 3.853 26 N -0.391 5.391 27 C -0.272 4.272 28 C -0.154 4.154 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.253 0.747 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.165 0.835 43 H 0.189 0.811 44 H 0.250 0.750 45 H 0.235 0.765 46 H 0.162 0.838 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.287 -17.178 -13.259 25.981 hybrid contribution 0.975 0.917 0.290 1.369 sum -13.312 -16.261 -12.969 24.695 Atomic orbital electron populations 1.69892 1.09271 1.30647 1.35322 1.26866 0.95403 1.04996 0.91340 0.85242 0.78702 0.75446 0.80308 1.18511 1.19745 1.17516 1.19849 0.98630 0.92268 1.42057 0.89746 1.17953 0.91805 0.93977 0.89891 1.21425 1.03959 0.92790 1.05552 1.20940 0.95318 0.97718 0.97363 1.20878 1.00419 0.95111 1.05138 1.19819 0.97053 0.95617 1.01924 1.18779 0.83253 0.83731 0.79535 1.90670 1.67524 1.31990 1.57339 1.45756 1.30865 1.08547 1.51367 1.21449 0.86470 0.99493 0.93285 1.21721 0.98471 0.93496 1.01631 1.21374 0.96737 0.96484 0.99619 1.20635 0.94144 0.97220 0.99243 1.20301 0.95762 0.91360 0.93557 1.21994 0.92705 1.09258 1.02120 1.22767 1.00297 0.91947 0.87202 1.67183 1.24960 1.22581 1.15362 1.18682 0.89440 0.90319 0.86854 1.42213 1.12590 1.82450 1.01809 1.21447 0.98766 1.12920 0.94033 1.21441 0.98388 0.96457 0.99094 0.90332 0.87339 0.84179 0.84233 0.74716 0.92943 0.93145 0.89555 0.89476 0.91979 0.91873 0.89043 0.89270 0.83497 0.81089 0.75037 0.76456 0.83833 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.63 10.96 21.82 0.24 -46.39 16 2 C 0.03 1.52 5.14 85.25 0.44 1.96 16 3 Si 0.98 39.95 29.60 68.60 2.03 41.98 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.50 -27.33 9.05 23.47 0.21 -27.12 16 8 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 10 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 11 C -0.10 -3.70 10.01 22.18 0.22 -3.48 16 12 C -0.20 -7.50 9.55 22.70 0.22 -7.28 16 13 C -0.14 -6.66 5.87 -20.13 -0.12 -6.78 16 14 C 0.56 24.54 7.77 86.80 0.67 25.22 16 15 O -0.59 -31.41 16.33 -3.86 -0.06 -31.47 16 16 N -0.71 -21.65 5.51 -465.93 -2.57 -24.21 16 17 C 0.12 2.92 5.67 86.38 0.49 3.41 16 18 C -0.12 -1.67 5.33 30.59 0.16 -1.50 16 19 C -0.10 -1.39 5.20 30.59 0.16 -1.23 16 20 C -0.08 -0.80 5.39 29.85 0.16 -0.64 16 21 C 0.00 -0.03 5.17 -19.70 -0.10 -0.13 16 22 C -0.24 -3.51 9.81 22.37 0.22 -3.29 16 23 C 0.13 2.22 11.17 84.62 0.95 3.17 16 24 N -0.58 -11.69 10.39 -193.26 -2.01 -13.70 16 25 C 0.38 6.70 7.75 133.07 1.03 7.73 16 26 N -0.85 -9.44 9.07 -55.43 -0.50 -9.94 16 27 C -0.25 -3.75 9.64 22.50 0.22 -3.54 16 28 C -0.13 -7.46 8.24 23.01 0.19 -7.27 16 29 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 30 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.14 3.89 6.38 -2.91 -0.02 3.87 16 33 H 0.41 9.70 6.49 -92.71 -0.60 9.09 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.78 8.10 -2.39 -0.02 0.76 16 41 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.42 2.54 8.82 -92.71 -0.82 1.72 16 45 H 0.41 3.94 8.95 -92.71 -0.83 3.11 16 46 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.10 6.07 5.74 -2.91 -0.02 6.06 16 Total: -1.00 -76.25 397.21 1.12 -75.13 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -1.23 Total: 35.79 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 5.22 Total: -27.18 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -4.84 Total: -94.25 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.06 Total: -31.47 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -76.25 1.12 -75.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306091289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.184 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds