Wall clock time and date at job start Sat Apr 11 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47300 * 300.00320 * 3 2 1 6 6 H 1.48501 * 109.47323 * 60.00063 * 3 2 1 7 7 C 1.38810 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99701 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46830 * 175.28850 * 10 9 7 12 12 H 1.09004 * 109.59019 * 309.14041 * 11 10 9 13 13 C 1.53198 * 109.58694 * 188.70883 * 11 10 9 14 14 C 1.53036 * 109.31209 * 185.57974 * 13 11 10 15 15 C 1.53042 * 109.53903 * 61.36573 * 14 13 11 16 16 C 1.53621 * 109.24297 * 298.50590 * 15 14 13 17 17 N 1.46931 * 109.58630 * 69.42255 * 11 10 9 18 18 C 1.34774 * 120.63117 * 353.36921 * 17 11 10 19 19 O 1.21568 * 119.99764 * 6.43418 * 18 17 11 20 20 C 1.47776 * 120.00126 * 186.43251 * 18 17 11 21 21 C 1.40646 * 119.69971 * 37.78270 * 20 18 17 22 22 C 1.35851 * 120.88086 * 179.97438 * 21 20 18 23 23 C 1.40397 * 119.84120 * 0.02562 * 22 21 20 24 24 C 1.40633 * 121.98044 * 179.97438 * 23 22 21 25 25 C 1.36220 * 118.72953 * 180.02562 * 24 23 22 26 26 N 1.32600 * 121.90577 * 0.02562 * 25 24 23 27 27 C 1.31239 * 122.73328 * 0.27295 * 26 25 24 28 28 C 1.40543 * 119.89059 * 359.46653 * 27 26 25 29 29 C 1.38562 * 119.69926 * 217.80871 * 20 18 17 30 30 H 0.97002 * 119.99587 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99933 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47232 * 55.29553 * 10 9 7 33 33 H 1.08995 * 109.47213 * 295.28417 * 10 9 7 34 34 H 1.09002 * 109.49469 * 305.53298 * 13 11 10 35 35 H 1.08996 * 109.49263 * 65.62706 * 13 11 10 36 36 H 1.09001 * 109.45656 * 181.38396 * 14 13 11 37 37 H 1.09003 * 109.46261 * 301.34188 * 14 13 11 38 38 H 1.09002 * 109.49751 * 58.59039 * 15 14 13 39 39 H 1.09004 * 109.49205 * 178.64814 * 15 14 13 40 40 H 1.08998 * 109.74139 * 295.12516 * 16 15 14 41 41 H 1.09001 * 109.66424 * 174.54285 * 16 15 14 42 42 H 1.08007 * 119.56048 * 0.02562 * 21 20 18 43 43 H 1.07994 * 120.08236 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.63193 * 0.07140 * 24 23 22 45 45 H 1.08002 * 119.04589 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.05171 * 179.72314 * 27 26 25 47 47 H 1.08001 * 120.34799 * 359.97239 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0678 -4.8173 0.1156 12 1 0.3953 -4.6405 0.9550 13 6 1.8338 -6.1259 0.3341 14 6 0.8502 -7.2980 0.3113 15 6 0.1629 -7.3629 -1.0546 16 6 -0.6263 -6.0655 -1.2865 17 7 0.2886 -4.9271 -1.1252 18 6 0.4064 -3.9982 -2.0945 19 8 1.2457 -3.1239 -1.9997 20 6 -0.4846 -4.0425 -3.2726 21 6 -1.8319 -4.4134 -3.1138 22 6 -2.6723 -4.4617 -4.1801 23 6 -2.1955 -4.1386 -5.4605 24 6 -3.0254 -4.1740 -6.5952 25 6 -2.4933 -3.8481 -7.8061 26 7 -1.2208 -3.5010 -7.9419 27 6 -0.3868 -3.4515 -6.9297 28 6 -0.8369 -3.7638 -5.6354 29 6 0.0150 -3.7187 -4.5238 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 2.7457 -3.6793 0.8437 33 1 2.6205 -3.7516 -0.9304 34 1 2.5701 -6.2533 -0.4595 35 1 2.3399 -6.0943 1.2990 36 1 1.3894 -8.2281 0.4911 37 1 0.0996 -7.1575 1.0892 38 1 0.9149 -7.4788 -1.8351 39 1 -0.5198 -8.2124 -1.0782 40 1 -1.4342 -5.9909 -0.5586 41 1 -1.0389 -6.0625 -2.2954 42 1 -2.2037 -4.6625 -2.1307 43 1 -3.7046 -4.7478 -4.0433 44 1 -4.0650 -4.4535 -6.5081 45 1 -3.1260 -3.8740 -8.6810 46 1 0.6426 -3.1672 -7.0905 47 1 1.0503 -3.4343 -4.6411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317192195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:52 Heat of formation + Delta-G solvation = 77.543035 kcal Electronic energy + Delta-G solvation = -29985.944055 eV Core-core repulsion = 26135.538802 eV Total energy + Delta-G solvation = -3850.405253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98908 -40.03382 -37.43254 -36.70553 -34.45980 -32.98139 -32.83357 -32.03378 -30.90842 -29.83988 -29.63646 -26.29805 -24.76244 -24.48680 -23.69673 -22.77037 -22.31544 -21.42247 -20.65364 -19.39463 -18.06931 -17.38316 -16.72219 -16.64049 -15.69070 -15.41580 -15.12020 -14.94680 -14.61512 -14.50652 -14.24681 -14.15720 -13.96425 -13.63920 -13.53381 -13.34702 -13.01350 -12.91732 -12.71934 -12.25436 -12.13160 -12.00173 -11.94491 -11.58412 -11.27712 -11.05248 -10.91466 -10.75341 -10.72864 -10.55897 -10.31481 -10.22916 -9.86600 -9.59913 -9.53889 -9.03389 -8.78342 -8.41612 -8.10733 -8.05978 -6.55147 -5.58847 -2.76940 0.25039 0.74981 1.82853 2.75865 3.32704 3.51717 3.58732 3.59610 3.60925 4.06045 4.32227 4.47033 4.64783 4.67563 4.72864 4.78045 4.79871 4.89259 4.95413 5.06239 5.14094 5.17321 5.18028 5.38716 5.47167 5.51862 5.59699 5.66271 5.73201 5.77162 5.78531 5.80684 5.84649 5.95373 5.97239 6.01837 6.07197 6.13185 6.29223 6.34131 6.35770 6.51700 6.55226 6.63627 6.73901 6.92559 7.27054 7.85665 7.87878 7.90494 8.59329 8.86475 9.70661 10.29953 10.64040 11.64972 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.004536 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.412914 B = 6171.664397 C = 8686.664671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.021 4.021 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.206 4.206 8 H 0.067 0.933 9 N -0.695 5.695 10 C 0.158 3.842 11 C 0.144 3.856 12 H 0.069 0.931 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.101 3.899 17 N -0.611 5.611 18 C 0.512 3.488 19 O -0.434 6.434 20 C -0.106 4.106 21 C -0.070 4.070 22 C -0.125 4.125 23 C -0.015 4.015 24 C -0.159 4.159 25 C 0.074 3.926 26 N -0.495 5.495 27 C 0.154 3.846 28 C -0.115 4.115 29 C -0.036 4.036 30 H 0.250 0.750 31 H 0.379 0.621 32 H 0.015 0.985 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.150 0.850 46 H 0.165 0.835 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -18.408 -8.197 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.338 5.338 10 C 0.030 3.970 11 C 0.040 3.960 12 H 0.087 0.913 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.022 4.022 17 N -0.349 5.349 18 C 0.298 3.702 19 O -0.303 6.303 20 C -0.110 4.110 21 C -0.090 4.090 22 C -0.143 4.143 23 C -0.021 4.021 24 C -0.179 4.179 25 C -0.069 4.069 26 N -0.203 5.203 27 C -0.017 4.017 28 C -0.117 4.117 29 C -0.057 4.057 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.168 0.832 46 H 0.182 0.818 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.074 -17.565 -9.032 20.392 hybrid contribution -0.494 0.762 0.880 1.265 sum -5.568 -16.803 -8.152 19.488 Atomic orbital electron populations 1.69666 1.05029 1.24924 1.59027 1.24621 0.95428 0.97292 1.04249 0.86162 0.78763 0.84695 0.76960 1.20747 1.22209 1.22262 1.19216 0.90823 0.84223 1.39565 0.91538 1.42293 1.05366 0.99827 1.86289 1.20957 0.93028 0.84751 0.98237 1.21509 0.93358 0.95564 0.85523 0.91310 1.21905 0.98125 0.94179 1.02369 1.21501 0.98695 0.98279 0.97056 1.21997 0.99893 0.97210 0.98107 1.22073 0.92260 0.85650 1.02236 1.47703 1.44280 1.24880 1.18011 1.18187 0.86214 0.82723 0.83099 1.91198 1.32135 1.32783 1.74134 1.20193 0.94542 1.01686 0.94587 1.21247 0.92557 0.95625 0.99554 1.20811 0.99949 1.02285 0.91261 1.18229 0.92792 0.96685 0.94362 1.21877 1.00600 1.02435 0.92963 1.22163 0.91626 0.96081 0.97055 1.67450 1.04344 1.13832 1.34677 1.23282 0.99323 0.92330 0.86778 1.18968 0.94107 1.03084 0.95582 1.21320 0.99961 0.94209 0.90187 0.94030 0.78748 0.96696 0.93857 0.91528 0.90880 0.92052 0.91883 0.91617 0.91280 0.91819 0.89320 0.84762 0.84941 0.84602 0.83238 0.81814 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.58 13.06 55.49 0.72 -28.86 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 0.90 23.68 29.55 -169.99 -5.02 18.66 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 7 C -0.21 -6.07 9.71 -15.06 -0.15 -6.21 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.70 -18.34 3.24 -59.91 -0.19 -18.53 16 10 C 0.16 3.33 4.87 -4.04 -0.02 3.31 16 11 C 0.14 2.34 2.92 -67.59 -0.20 2.14 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 13 C -0.13 -1.58 5.36 -26.61 -0.14 -1.72 16 14 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 15 C -0.13 -1.27 6.10 -26.39 -0.16 -1.43 16 16 C 0.10 1.13 4.82 -3.48 -0.02 1.11 16 17 N -0.61 -9.44 2.97 -166.07 -0.49 -9.93 16 18 C 0.51 9.50 6.71 -12.36 -0.08 9.42 16 19 O -0.43 -10.19 10.67 5.31 0.06 -10.13 16 20 C -0.11 -1.68 5.20 -104.97 -0.55 -2.23 16 21 C -0.07 -0.92 7.25 -39.53 -0.29 -1.21 16 22 C -0.13 -1.44 9.77 -39.62 -0.39 -1.83 16 23 C -0.02 -0.19 5.75 -106.74 -0.61 -0.81 16 24 C -0.16 -1.68 9.87 -39.40 -0.39 -2.07 16 25 C 0.07 0.82 11.07 -17.95 -0.20 0.62 16 26 N -0.50 -6.46 10.30 -13.11 -0.14 -6.60 16 27 C 0.15 1.96 11.05 -16.94 -0.19 1.77 16 28 C -0.12 -1.58 5.74 -106.88 -0.61 -2.19 16 29 C -0.04 -0.54 9.39 -38.75 -0.36 -0.90 16 30 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.38 10.64 7.09 -40.82 -0.29 10.35 16 32 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 33 H 0.04 0.99 6.29 -51.93 -0.33 0.67 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 41 H 0.09 0.93 4.63 -51.93 -0.24 0.69 16 42 H 0.13 1.57 6.28 -52.48 -0.33 1.24 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.16 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.14 2.07 8.02 -52.49 -0.42 1.65 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -35.71 371.90 -10.71 -46.42 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.64 Total: 7.64 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.60 Total: -4.28 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.10 Total: -63.91 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.06 Total: -10.13 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.71 -10.71 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317192195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.961 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds