Wall clock time and date at job start Sat Apr 11 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47300 * 300.00320 * 3 2 1 6 6 H 1.48501 * 109.47323 * 60.00063 * 3 2 1 7 7 C 1.38810 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99701 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46830 * 175.28850 * 10 9 7 12 12 H 1.09004 * 109.59019 * 309.14041 * 11 10 9 13 13 C 1.53198 * 109.58694 * 188.70883 * 11 10 9 14 14 C 1.53036 * 109.31209 * 185.57974 * 13 11 10 15 15 C 1.53042 * 109.53903 * 61.36573 * 14 13 11 16 16 C 1.53621 * 109.24297 * 298.50590 * 15 14 13 17 17 N 1.46931 * 109.58630 * 69.42255 * 11 10 9 18 18 C 1.34774 * 120.63117 * 353.36921 * 17 11 10 19 19 O 1.21568 * 119.99764 * 6.43418 * 18 17 11 20 20 C 1.47776 * 120.00126 * 186.43251 * 18 17 11 21 21 C 1.40646 * 119.69971 * 37.78270 * 20 18 17 22 22 C 1.35851 * 120.88086 * 179.97438 * 21 20 18 23 23 C 1.40397 * 119.84120 * 0.02562 * 22 21 20 24 24 C 1.40633 * 121.98044 * 179.97438 * 23 22 21 25 25 C 1.36220 * 118.72953 * 180.02562 * 24 23 22 26 26 N 1.32600 * 121.90577 * 0.02562 * 25 24 23 27 27 C 1.31239 * 122.73328 * 0.27295 * 26 25 24 28 28 C 1.40543 * 119.89059 * 359.46653 * 27 26 25 29 29 C 1.38562 * 119.69926 * 217.80871 * 20 18 17 30 30 H 0.97002 * 119.99587 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99933 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47232 * 55.29553 * 10 9 7 33 33 H 1.08995 * 109.47213 * 295.28417 * 10 9 7 34 34 H 1.09002 * 109.49469 * 305.53298 * 13 11 10 35 35 H 1.08996 * 109.49263 * 65.62706 * 13 11 10 36 36 H 1.09001 * 109.45656 * 181.38396 * 14 13 11 37 37 H 1.09003 * 109.46261 * 301.34188 * 14 13 11 38 38 H 1.09002 * 109.49751 * 58.59039 * 15 14 13 39 39 H 1.09004 * 109.49205 * 178.64814 * 15 14 13 40 40 H 1.08998 * 109.74139 * 295.12516 * 16 15 14 41 41 H 1.09001 * 109.66424 * 174.54285 * 16 15 14 42 42 H 1.08007 * 119.56048 * 0.02562 * 21 20 18 43 43 H 1.07994 * 120.08236 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.63193 * 0.07140 * 24 23 22 45 45 H 1.08002 * 119.04589 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.05171 * 179.72314 * 27 26 25 47 47 H 1.08001 * 120.34799 * 359.97239 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0678 -4.8173 0.1156 12 1 0.3953 -4.6405 0.9550 13 6 1.8338 -6.1259 0.3341 14 6 0.8502 -7.2980 0.3113 15 6 0.1629 -7.3629 -1.0546 16 6 -0.6263 -6.0655 -1.2865 17 7 0.2886 -4.9271 -1.1252 18 6 0.4064 -3.9982 -2.0945 19 8 1.2457 -3.1239 -1.9997 20 6 -0.4846 -4.0425 -3.2726 21 6 -1.8319 -4.4134 -3.1138 22 6 -2.6723 -4.4617 -4.1801 23 6 -2.1955 -4.1386 -5.4605 24 6 -3.0254 -4.1740 -6.5952 25 6 -2.4933 -3.8481 -7.8061 26 7 -1.2208 -3.5010 -7.9419 27 6 -0.3868 -3.4515 -6.9297 28 6 -0.8369 -3.7638 -5.6354 29 6 0.0150 -3.7187 -4.5238 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0016 32 1 2.7457 -3.6793 0.8437 33 1 2.6205 -3.7516 -0.9304 34 1 2.5701 -6.2533 -0.4595 35 1 2.3399 -6.0943 1.2990 36 1 1.3894 -8.2281 0.4911 37 1 0.0996 -7.1575 1.0892 38 1 0.9149 -7.4788 -1.8351 39 1 -0.5198 -8.2124 -1.0782 40 1 -1.4342 -5.9909 -0.5586 41 1 -1.0389 -6.0625 -2.2954 42 1 -2.2037 -4.6625 -2.1307 43 1 -3.7046 -4.7478 -4.0433 44 1 -4.0650 -4.4535 -6.5081 45 1 -3.1260 -3.8740 -8.6810 46 1 0.6426 -3.1672 -7.0905 47 1 1.0503 -3.4343 -4.6411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317192195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:51 Heat of formation + Delta-G solvation = 55.075997 kcal Electronic energy + Delta-G solvation = -29986.918299 eV Core-core repulsion = 26135.538802 eV Total energy + Delta-G solvation = -3851.379497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07818 -41.22117 -38.50777 -37.94736 -36.27163 -34.14299 -33.91350 -33.60453 -32.06030 -31.42096 -30.67450 -27.76405 -26.20623 -25.55482 -24.80697 -24.25833 -23.45570 -22.72453 -21.76235 -20.55765 -19.37891 -18.84419 -18.16316 -17.70050 -16.88093 -16.77051 -16.54259 -16.07951 -15.98086 -15.64358 -15.42893 -15.26474 -15.12273 -15.01233 -14.84643 -14.56134 -14.29134 -14.15483 -13.97110 -13.68568 -13.50407 -13.19709 -13.02888 -12.90439 -12.83689 -12.56054 -12.29453 -12.11771 -12.06162 -11.86047 -11.71463 -11.47213 -11.34877 -11.20471 -10.91471 -10.55355 -10.14388 -9.85824 -9.48306 -9.05720 -8.65063 -7.86357 -5.05018 -0.73694 -0.26674 0.83150 1.41526 1.43955 1.53163 1.68006 2.08881 2.33546 2.59894 3.04957 3.44397 3.46756 3.49779 3.63759 3.70164 3.82424 3.85689 3.88937 4.00631 4.06683 4.10875 4.15688 4.32358 4.35777 4.41612 4.49235 4.61149 4.64700 4.69529 4.75269 4.80485 4.87402 4.91328 4.96066 5.00033 5.06120 5.12510 5.15399 5.24785 5.28398 5.30942 5.35094 5.50237 5.53671 5.63083 5.74464 5.84831 6.35342 6.60501 6.95561 7.40902 7.48648 8.21127 8.44000 9.38641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.004536 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.412914 B = 6171.664397 C = 8686.664671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.061 0.939 9 N -0.705 5.705 10 C 0.161 3.839 11 C 0.148 3.852 12 H 0.065 0.935 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.514 3.486 19 O -0.503 6.503 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.106 4.106 23 C -0.029 4.029 24 C -0.147 4.147 25 C 0.065 3.935 26 N -0.511 5.511 27 C 0.141 3.859 28 C -0.129 4.129 29 C -0.047 4.047 30 H 0.244 0.756 31 H 0.367 0.633 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.149 0.851 43 H 0.174 0.826 44 H 0.176 0.824 45 H 0.182 0.818 46 H 0.175 0.825 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -21.082 -8.970 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.228 1.228 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.079 0.921 9 N -0.345 5.345 10 C 0.034 3.966 11 C 0.044 3.956 12 H 0.083 0.917 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.166 4.166 16 C -0.028 4.028 17 N -0.341 5.341 18 C 0.301 3.699 19 O -0.376 6.376 20 C -0.131 4.131 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.034 4.034 24 C -0.166 4.166 25 C -0.078 4.078 26 N -0.219 5.219 27 C -0.029 4.029 28 C -0.131 4.131 29 C -0.068 4.068 30 H 0.053 0.947 31 H 0.198 0.802 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.166 0.834 43 H 0.192 0.808 44 H 0.193 0.807 45 H 0.199 0.801 46 H 0.192 0.808 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.448 -20.334 -9.807 23.772 hybrid contribution 0.179 1.425 0.910 1.700 sum -7.269 -18.909 -8.897 22.125 Atomic orbital electron populations 1.69820 1.06340 1.25042 1.61443 1.25338 0.96324 1.00357 1.05391 0.85169 0.78129 0.80694 0.76494 1.19544 1.22825 1.21798 1.19508 0.90801 0.85802 1.38063 0.92054 1.42314 1.04708 1.00675 1.86829 1.20967 0.93966 0.84877 0.96771 1.21396 0.92722 0.95649 0.85790 0.91693 1.21861 0.98318 0.93085 1.02553 1.21502 0.98319 0.97608 0.97565 1.21989 1.00064 0.97015 0.97544 1.22432 0.92157 0.84737 1.03498 1.47858 1.44199 1.25295 1.16795 1.18789 0.85282 0.81974 0.83845 1.91168 1.34997 1.35363 1.76106 1.20133 0.95722 1.03705 0.93493 1.21338 0.91324 0.96438 1.00967 1.21225 1.01312 0.99803 0.89973 1.18620 0.92489 0.96492 0.95846 1.22276 1.02037 1.00684 0.91651 1.22776 0.91178 0.95113 0.98684 1.67498 1.05529 1.14110 1.34784 1.23479 1.00125 0.92740 0.86597 1.19063 0.94925 1.03780 0.95304 1.21308 0.99880 0.94694 0.90935 0.94701 0.80176 0.96859 0.95884 0.92323 0.89947 0.89785 0.90987 0.92464 0.87982 0.90058 0.88321 0.83372 0.80849 0.80655 0.80113 0.80832 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.00 13.06 21.65 0.28 -63.72 16 2 C -0.08 -5.21 5.50 84.86 0.47 -4.74 16 3 Si 0.96 50.54 29.55 68.60 2.03 52.57 16 4 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 6 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 7 C -0.21 -12.87 9.71 84.03 0.82 -12.06 16 8 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.70 -39.24 3.24 -343.46 -1.11 -40.35 16 10 C 0.16 7.18 4.87 86.38 0.42 7.60 16 11 C 0.15 4.90 2.92 44.98 0.13 5.03 16 12 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.12 -2.85 5.36 30.67 0.16 -2.69 16 14 C -0.11 -1.87 5.88 30.62 0.18 -1.69 16 15 C -0.13 -2.02 6.10 30.82 0.19 -1.83 16 16 C 0.09 1.89 4.82 86.51 0.42 2.31 16 17 N -0.61 -18.89 2.97 -797.60 -2.37 -21.25 16 18 C 0.51 20.05 6.71 86.77 0.58 20.64 16 19 O -0.50 -25.44 10.67 -3.93 -0.04 -25.48 16 20 C -0.13 -4.14 5.20 -20.09 -0.10 -4.24 16 21 C -0.08 -2.01 7.25 22.30 0.16 -1.85 16 22 C -0.11 -2.10 9.77 22.24 0.22 -1.88 16 23 C -0.03 -0.67 5.75 -21.23 -0.12 -0.79 16 24 C -0.15 -2.54 9.87 22.38 0.22 -2.32 16 25 C 0.07 1.24 11.07 84.11 0.93 2.17 16 26 N -0.51 -12.66 10.30 -195.40 -2.01 -14.67 16 27 C 0.14 3.60 11.05 85.34 0.94 4.54 16 28 C -0.13 -3.51 5.74 -21.32 -0.12 -3.63 16 29 C -0.05 -1.50 9.39 22.81 0.21 -1.28 16 30 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.37 21.75 7.09 -92.70 -0.66 21.09 16 32 H 0.01 0.60 8.13 -2.39 -0.02 0.58 16 33 H 0.02 1.15 6.29 -2.39 -0.02 1.13 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 41 H 0.10 1.85 4.63 -2.39 -0.01 1.84 16 42 H 0.15 3.16 6.28 -2.91 -0.02 3.14 16 43 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 47 H 0.13 4.20 8.02 -2.91 -0.02 4.18 16 Total: -1.00 -83.51 371.90 2.82 -80.69 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.33 Total: 28.94 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.70 Total: 3.28 kcal Atomic # 7 Polarization: -134.79 SS G_CDS: -5.21 Total: -140.00 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.03 Total: 52.57 kcal Total: -83.51 2.82 -80.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317192195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.767 kcal (2) G-P(sol) polarization free energy of solvation -83.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds