Wall clock time and date at job start Sat Apr 11 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00151 * 2 1 4 4 H 1.48509 * 109.47272 * 89.99790 * 3 2 1 5 5 H 1.48494 * 109.47414 * 209.99957 * 3 2 1 6 6 H 1.48503 * 109.47125 * 330.00034 * 3 2 1 7 7 C 1.38807 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00078 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46934 * 172.58832 * 10 9 7 12 12 H 1.09000 * 109.87790 * 45.57384 * 11 10 9 13 13 C 1.54320 * 109.88086 * 166.58914 * 11 10 9 14 14 C 1.55159 * 102.94389 * 141.60793 * 13 11 10 15 15 C 1.54902 * 101.57904 * 324.49668 * 14 13 11 16 16 N 1.47025 * 109.87981 * 284.39253 * 11 10 9 17 17 C 1.34778 * 125.64418 * 61.60444 * 16 11 10 18 18 O 1.21711 * 120.00260 * 6.25288 * 17 16 11 19 19 C 1.46591 * 119.99381 * 186.25626 * 17 16 11 20 20 C 1.38050 * 126.00262 * 186.33071 * 19 17 16 21 21 C 1.39360 * 107.44214 * 179.84015 * 20 19 17 22 22 C 1.37821 * 107.65292 * 0.42284 * 21 20 19 23 23 C 1.47814 * 125.82538 * 179.73860 * 22 21 20 24 24 C 1.39594 * 120.14445 * 179.72211 * 23 22 21 25 25 C 1.37957 * 119.85051 * 179.72026 * 24 23 22 26 26 C 1.38359 * 120.14088 * 0.57871 * 25 24 23 27 27 C 1.38364 * 120.30073 * 359.67420 * 26 25 24 28 28 C 1.37956 * 120.14365 * 0.04596 * 27 26 25 29 29 N 1.36410 * 108.35201 * 359.73463 * 22 21 20 30 30 H 0.97000 * 125.71951 * 180.02562 * 29 22 21 31 31 H 0.96994 * 120.00030 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00448 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47077 * 292.58525 * 10 9 7 34 34 H 1.08995 * 109.47289 * 52.58841 * 10 9 7 35 35 H 1.09000 * 110.72134 * 259.97202 * 13 11 10 36 36 H 1.09005 * 110.72473 * 23.24445 * 13 11 10 37 37 H 1.08999 * 111.00328 * 82.57516 * 14 13 11 38 38 H 1.09001 * 111.00287 * 206.38563 * 14 13 11 39 39 H 1.09005 * 110.36485 * 155.84788 * 15 14 13 40 40 H 1.09002 * 110.37233 * 278.05646 * 15 14 13 41 41 H 1.08001 * 126.28159 * 0.02562 * 20 19 17 42 42 H 1.07993 * 126.17493 * 180.15173 * 21 20 19 43 43 H 1.08002 * 120.07495 * 359.97438 * 24 23 22 44 44 H 1.08000 * 119.92793 * 180.27307 * 25 24 23 45 45 H 1.08000 * 119.85098 * 179.69716 * 26 25 24 46 46 H 1.08004 * 119.92915 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.07030 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0741 -4.8136 0.1875 12 1 0.2109 -4.6740 -0.4632 13 6 1.7688 -6.1516 -0.1420 14 6 1.1882 -7.1167 0.9251 15 6 1.0542 -6.1800 2.1515 16 7 0.6407 -4.8808 1.5908 17 6 -0.0237 -3.9143 2.2548 18 8 -0.4141 -2.9261 1.6611 19 6 -0.2762 -4.0533 3.6921 20 6 -1.0441 -3.2071 4.4667 21 6 -1.0252 -3.7012 5.7697 22 6 -0.2403 -4.8341 5.7757 23 6 0.0567 -5.6746 6.9548 24 6 0.8656 -6.8047 6.8242 25 6 1.1436 -7.5816 7.9298 26 6 0.6129 -7.2494 9.1636 27 6 -0.1939 -6.1335 9.2989 28 6 -0.4751 -5.3449 8.2025 29 7 0.2156 -5.0475 4.5079 30 1 0.7898 -5.7774 4.2279 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.5823 -3.7745 -0.9467 34 1 2.7798 -3.6589 0.8185 35 1 1.5074 -6.4848 -1.1463 36 1 2.8497 -6.0619 -0.0335 37 1 0.2150 -7.4994 0.6176 38 1 1.8798 -7.9338 1.1305 39 1 0.2940 -6.5571 2.8357 40 1 2.0118 -6.0864 2.6639 41 1 -1.5665 -2.3257 4.1251 42 1 -1.5304 -3.2712 6.6218 43 1 1.2762 -7.0680 5.8606 44 1 1.7729 -8.4538 7.8311 45 1 0.8296 -7.8637 10.0251 46 1 -0.6047 -5.8795 10.2650 47 1 -1.1046 -4.4739 8.3096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319134464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:19 Heat of formation + Delta-G solvation = 44.623459 kcal Electronic energy + Delta-G solvation = -29282.011353 eV Core-core repulsion = 25430.178600 eV Total energy + Delta-G solvation = -3851.832753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57532 -40.91086 -39.62388 -38.48240 -36.60220 -33.70908 -33.04912 -32.83384 -32.30935 -31.54060 -30.25854 -29.06087 -26.61447 -25.33504 -24.49852 -23.72039 -23.25400 -22.55935 -21.73938 -21.09460 -20.61245 -19.39125 -18.79302 -17.96461 -17.74135 -17.11854 -16.58710 -16.01639 -15.85590 -15.75719 -15.55906 -15.34806 -15.20604 -14.99232 -14.76996 -14.55684 -14.37705 -14.13035 -13.98210 -13.81010 -13.63595 -13.55140 -13.42328 -13.04050 -12.61816 -12.56870 -12.24728 -12.23910 -12.21804 -11.91358 -11.87394 -11.72946 -11.24012 -10.99422 -10.92718 -10.47289 -10.16321 -9.89550 -9.77152 -8.96160 -8.70060 -8.32507 -5.21784 -0.23712 0.47190 0.70496 1.50410 1.64547 1.69561 1.77190 1.78448 2.00387 2.32606 2.72654 2.95693 3.37013 3.44065 3.48297 3.55581 3.67566 3.85585 3.90946 4.00995 4.04299 4.14554 4.19705 4.22540 4.28173 4.30187 4.36802 4.54662 4.57589 4.61446 4.64963 4.70434 4.82169 4.87832 4.97853 5.00470 5.02118 5.06314 5.11359 5.25528 5.31656 5.45106 5.50913 5.56453 5.59727 5.71724 5.77349 6.02885 6.28454 6.43743 6.60392 7.05270 7.35097 8.20002 8.30169 9.20756 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.003197 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.395270 B = 8757.067843 C =10282.362011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.108 4.108 3 Si 1.132 2.868 4 H -0.289 1.289 5 H -0.271 1.271 6 H -0.289 1.289 7 C -0.340 4.340 8 H 0.055 0.945 9 N -0.751 5.751 10 C 0.149 3.851 11 C 0.130 3.870 12 H 0.050 0.950 13 C -0.113 4.113 14 C -0.112 4.112 15 C 0.075 3.925 16 N -0.617 5.617 17 C 0.580 3.420 18 O -0.537 6.537 19 C -0.052 4.052 20 C -0.128 4.128 21 C -0.192 4.192 22 C 0.089 3.911 23 C -0.041 4.041 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.108 4.108 29 N -0.519 5.519 30 H 0.426 0.574 31 H 0.247 0.753 32 H 0.374 0.626 33 H 0.027 0.973 34 H 0.009 0.991 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.169 0.831 43 H 0.127 0.873 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -25.561 18.182 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.300 4.300 3 Si 0.957 3.043 4 H -0.217 1.217 5 H -0.196 1.196 6 H -0.215 1.215 7 C -0.471 4.471 8 H 0.073 0.927 9 N -0.401 5.401 10 C 0.021 3.979 11 C 0.026 3.974 12 H 0.068 0.932 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.047 4.047 16 N -0.352 5.352 17 C 0.370 3.630 18 O -0.413 6.413 19 C -0.166 4.166 20 C -0.155 4.155 21 C -0.215 4.215 22 C -0.028 4.028 23 C -0.042 4.042 24 C -0.148 4.148 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.127 4.127 29 N -0.121 5.121 30 H 0.271 0.729 31 H 0.058 0.942 32 H 0.212 0.788 33 H 0.045 0.955 34 H 0.027 0.973 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.146 0.854 42 H 0.186 0.814 43 H 0.145 0.855 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.167 0.833 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.850 -23.472 17.754 29.568 hybrid contribution -0.147 -1.145 -0.543 1.276 sum 2.703 -24.617 17.211 30.159 Atomic orbital electron populations 1.70800 1.07170 1.28429 1.55374 1.27270 0.97262 1.04654 1.00789 0.82608 0.73583 0.71555 0.76588 1.21669 1.19582 1.21511 1.20348 0.91632 0.87841 1.47313 0.92688 1.43013 1.06040 1.01216 1.89874 1.21146 0.93827 0.85727 0.97220 1.21912 0.96278 0.97082 0.82112 0.93196 1.22655 1.00842 0.90254 1.01380 1.22779 1.03439 0.96897 0.91818 1.22852 1.00330 0.82509 0.98974 1.48451 1.56663 1.17348 1.12766 1.17190 0.78347 0.82125 0.85364 1.90865 1.51575 1.30765 1.68061 1.20184 1.09430 0.96588 0.90398 1.21316 1.00804 0.99397 0.93985 1.21300 1.05587 0.97526 0.97095 1.19510 1.00773 0.98209 0.84316 1.18164 1.00255 0.95031 0.90763 1.21340 0.98563 0.94667 1.00206 1.21373 0.99816 1.00062 0.92228 1.21663 0.96545 0.97142 0.98348 1.21435 0.98195 0.94868 0.99073 1.21379 0.99531 1.00572 0.91221 1.42472 1.39685 1.22970 1.06975 0.72921 0.94187 0.78778 0.95521 0.97336 0.87952 0.89111 0.89735 0.85528 0.89763 0.89951 0.85399 0.81360 0.85533 0.83295 0.83276 0.83280 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -69.26 13.70 21.65 0.30 -68.96 16 2 C -0.11 -7.12 5.50 84.86 0.47 -6.66 16 3 Si 1.13 58.38 29.92 68.60 2.05 60.43 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 7 C -0.34 -21.98 9.99 84.03 0.84 -21.15 16 8 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 9 N -0.75 -44.72 4.41 -343.45 -1.51 -46.23 16 10 C 0.15 6.78 5.61 86.38 0.48 7.27 16 11 C 0.13 4.55 3.03 45.34 0.14 4.69 16 12 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 13 C -0.11 -2.33 6.44 31.78 0.20 -2.12 16 14 C -0.11 -1.57 7.08 31.98 0.23 -1.34 16 15 C 0.08 1.50 5.22 86.85 0.45 1.96 16 16 N -0.62 -21.03 3.07 -792.81 -2.43 -23.46 16 17 C 0.58 25.21 7.53 86.42 0.65 25.86 16 18 O -0.54 -30.13 13.32 -4.39 -0.06 -30.19 16 19 C -0.05 -1.91 6.81 40.36 0.27 -1.63 16 20 C -0.13 -4.73 10.61 22.50 0.24 -4.49 16 21 C -0.19 -5.39 10.22 22.44 0.23 -5.17 16 22 C 0.09 2.23 6.93 40.87 0.28 2.52 16 23 C -0.04 -0.80 5.87 -20.09 -0.12 -0.91 16 24 C -0.13 -1.96 9.70 22.53 0.22 -1.74 16 25 C -0.12 -1.33 10.03 22.23 0.22 -1.11 16 26 C -0.12 -1.24 10.04 22.33 0.22 -1.01 16 27 C -0.12 -1.42 10.03 22.23 0.22 -1.19 16 28 C -0.11 -1.76 9.56 22.53 0.22 -1.54 16 29 N -0.52 -13.64 5.27 -172.30 -0.91 -14.55 16 30 H 0.43 8.42 4.40 -92.71 -0.41 8.01 16 31 H 0.25 18.24 6.63 -92.71 -0.61 17.62 16 32 H 0.37 23.87 3.87 -92.71 -0.36 23.52 16 33 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.72 7.85 -2.38 -0.02 1.70 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.43 6.27 -2.38 -0.01 1.42 16 40 H 0.08 1.39 7.80 -2.39 -0.02 1.37 16 41 H 0.13 5.20 8.06 -2.91 -0.02 5.18 16 42 H 0.17 3.70 7.26 -2.91 -0.02 3.68 16 43 H 0.13 1.48 7.14 -2.91 -0.02 1.46 16 44 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 46 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.14 1.94 6.98 -2.91 -0.02 1.92 16 Total: -1.00 -94.48 378.24 3.31 -91.17 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.39 Total: 39.56 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.48 Total: -7.78 kcal Atomic # 7 Polarization: -148.64 SS G_CDS: -4.55 Total: -153.20 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 14 Polarization: 58.38 SS G_CDS: 2.05 Total: 60.43 kcal Total: -94.48 3.31 -91.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319134464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.792 kcal (2) G-P(sol) polarization free energy of solvation -94.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds