Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47358 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47184 * 120.00145 * 3 2 1 6 6 H 1.48502 * 109.47194 * 239.99850 * 3 2 1 7 7 C 1.38811 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00408 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00092 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47010 * 187.44820 * 10 9 7 12 12 H 1.08994 * 109.87639 * 314.42116 * 11 10 9 13 13 C 1.54324 * 109.88402 * 193.40219 * 11 10 9 14 14 C 1.55153 * 102.94607 * 218.39045 * 13 11 10 15 15 C 1.54910 * 101.58164 * 35.50448 * 14 13 11 16 16 N 1.47028 * 109.87967 * 75.59980 * 11 10 9 17 17 C 1.34772 * 125.64774 * 298.33239 * 16 11 10 18 18 O 1.21587 * 119.99806 * 2.93544 * 17 16 11 19 19 C 1.47577 * 120.00276 * 182.93846 * 17 16 11 20 20 C 1.39656 * 120.18829 * 319.35168 * 19 17 16 21 21 C 1.37833 * 119.91412 * 179.76761 * 20 19 17 22 22 C 1.38539 * 120.30881 * 0.50925 * 21 20 19 23 23 C 1.38064 * 120.39361 * 359.74246 * 22 21 20 24 24 C 1.38763 * 120.07187 * 0.02562 * 23 22 21 25 25 N 1.39670 * 120.15189 * 180.02562 * 24 23 22 26 26 C 1.36655 * 125.67881 * 124.47859 * 25 24 23 27 27 C 1.34808 * 108.19118 * 179.83270 * 26 25 24 28 28 C 1.40985 * 107.48632 * 0.42450 * 27 26 25 29 29 C 1.34806 * 107.48943 * 359.73455 * 28 27 26 30 30 H 0.96999 * 119.99608 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99976 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47289 * 307.44601 * 10 9 7 33 33 H 1.08996 * 109.47574 * 67.44969 * 10 9 7 34 34 H 1.09004 * 110.71784 * 336.75759 * 13 11 10 35 35 H 1.09003 * 110.71996 * 100.02683 * 13 11 10 36 36 H 1.08998 * 111.00338 * 153.57399 * 14 13 11 37 37 H 1.09002 * 111.00752 * 277.42790 * 14 13 11 38 38 H 1.09000 * 110.36669 * 81.82445 * 15 14 13 39 39 H 1.09000 * 110.36925 * 204.15095 * 15 14 13 40 40 H 1.07995 * 120.04489 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.84883 * 180.25274 * 21 20 19 42 42 H 1.08001 * 119.79978 * 179.72007 * 22 21 20 43 43 H 1.08001 * 119.95982 * 180.02562 * 23 22 21 44 44 H 1.08003 * 125.90139 * 359.97438 * 26 25 24 45 45 H 1.07998 * 126.25674 * 180.18011 * 27 26 25 46 46 H 1.08005 * 126.25848 * 179.76031 * 28 27 26 47 47 H 1.08001 * 125.90383 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0742 -4.8136 -0.1875 12 1 0.2103 -4.6740 0.4621 13 6 1.7685 -6.1517 0.1429 14 6 1.1892 -7.1168 -0.9249 15 6 1.0567 -6.1802 -2.1516 16 7 0.6426 -4.8809 -1.5914 17 6 -0.0221 -3.9150 -2.2559 18 8 -0.2670 -2.8579 -1.7073 19 6 -0.4527 -4.1403 -3.6494 20 6 0.3926 -4.7940 -4.5486 21 6 -0.0172 -5.0057 -5.8475 22 6 -1.2606 -4.5636 -6.2692 23 6 -2.1043 -3.9113 -5.3923 24 6 -1.7100 -3.6938 -4.0798 25 7 -2.5624 -3.0346 -3.1912 26 6 -2.9865 -3.5191 -1.9858 27 6 -3.7910 -2.5966 -1.4210 28 6 -3.8762 -1.5067 -2.3113 29 6 -3.1159 -1.8003 -3.3851 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 2.7808 -3.6591 -0.8164 33 1 2.5810 -3.7745 0.9485 34 1 2.8496 -6.0619 0.0357 35 1 1.5059 -6.4848 1.1469 36 1 1.8813 -7.9335 -1.1299 37 1 0.2156 -7.4995 -0.6185 38 1 2.0154 -6.0851 -2.6615 39 1 0.2974 -6.5573 -2.8367 40 1 1.3644 -5.1369 -4.2256 41 1 0.6357 -5.5150 -6.5409 42 1 -1.5715 -4.7299 -7.2900 43 1 -3.0723 -3.5700 -5.7284 44 1 -2.7210 -4.4748 -1.5585 45 1 -4.2837 -2.6792 -0.4635 46 1 -4.4461 -0.6017 -2.1604 47 1 -2.9693 -1.1691 -4.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324219543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = 98.847298 kcal Electronic energy + Delta-G solvation = -30824.003331 eV Core-core repulsion = 26974.521900 eV Total energy + Delta-G solvation = -3849.481431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28617 -39.82503 -38.49770 -36.78907 -34.19774 -32.93683 -32.11461 -31.13848 -30.52518 -28.68028 -28.61077 -28.31261 -25.07093 -24.13663 -22.93787 -22.63635 -21.46113 -21.10789 -19.83661 -19.72401 -18.91957 -17.79023 -17.39215 -16.49796 -16.33459 -15.69990 -15.36929 -14.74735 -14.38482 -14.21471 -13.88031 -13.68892 -13.47997 -13.33134 -13.20091 -13.12588 -12.85339 -12.84829 -12.60081 -12.21817 -12.01155 -11.83311 -11.60673 -11.55500 -11.52651 -11.37006 -11.12596 -11.03911 -10.65058 -10.57426 -10.44335 -9.89469 -9.47394 -9.31401 -9.14126 -8.83492 -8.59486 -8.11218 -7.95446 -7.61265 -6.50103 -5.37737 -2.65824 0.83354 1.06650 2.74882 3.15045 3.27416 3.32174 3.59049 3.62729 3.62911 3.64330 3.77193 4.51864 4.58185 4.70424 4.77805 4.82421 4.93292 4.96439 5.14430 5.18978 5.23800 5.37190 5.44918 5.56077 5.63272 5.65204 5.72645 5.75041 5.85878 5.88870 5.93574 6.00529 6.05578 6.10484 6.17342 6.20663 6.22970 6.26006 6.49837 6.61293 6.69131 6.76858 6.77571 6.86791 7.04533 7.46518 7.67291 7.92099 7.93550 7.98183 8.70106 8.89730 9.90700 10.56187 10.95689 11.81701 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.005638 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.317605 B = 4965.149650 C = 6583.633374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.006 4.006 3 Si 0.893 3.107 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.058 0.942 9 N -0.717 5.717 10 C 0.146 3.854 11 C 0.133 3.867 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.539 3.461 18 O -0.421 6.421 19 C -0.111 4.111 20 C -0.081 4.081 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.127 4.127 24 C 0.173 3.827 25 N -0.400 5.400 26 C 0.007 3.993 27 C -0.181 4.181 28 C -0.183 4.183 29 C -0.001 4.001 30 H 0.249 0.751 31 H 0.399 0.601 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -18.145 -11.188 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.204 4.204 3 Si 0.725 3.275 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.076 0.924 9 N -0.368 5.368 10 C 0.017 3.983 11 C 0.030 3.970 12 H 0.091 0.909 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.025 4.025 16 N -0.352 5.352 17 C 0.324 3.676 18 O -0.288 6.288 19 C -0.116 4.116 20 C -0.100 4.100 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.146 4.146 24 C 0.081 3.919 25 N -0.074 5.074 26 C -0.119 4.119 27 C -0.205 4.205 28 C -0.207 4.207 29 C -0.127 4.127 30 H 0.059 0.941 31 H 0.241 0.759 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.165 0.835 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.642 -17.432 -11.097 20.983 hybrid contribution 0.602 1.063 -0.096 1.225 sum -3.041 -16.369 -11.193 20.062 Atomic orbital electron populations 1.69735 1.04479 1.24539 1.56605 1.24662 0.95323 0.96837 1.03530 0.86500 0.78590 0.84974 0.77444 1.21897 1.21669 1.21877 1.19019 0.90284 0.84745 1.43241 0.92439 1.42760 1.06974 0.98682 1.88382 1.20957 0.93204 0.86844 0.97281 1.21866 0.97793 0.95428 0.81919 0.90891 1.22638 1.00694 0.93682 0.99242 1.22765 1.01697 0.97334 0.95261 1.22375 0.99522 0.84061 0.96536 1.48338 1.58022 1.16354 1.12527 1.17790 0.80319 0.84202 0.85276 1.91116 1.50051 1.21756 1.65890 1.20213 0.93523 1.01828 0.96027 1.21404 0.99258 0.96262 0.93117 1.21138 0.96699 1.01007 0.95761 1.21125 0.93770 0.96844 0.99391 1.21089 1.00809 1.00710 0.92038 1.17624 0.88890 0.95480 0.89902 1.41102 1.36123 1.14768 1.15409 1.21514 1.02465 1.00810 0.87115 1.20737 1.04692 0.94922 1.00192 1.20768 1.04950 0.99924 0.95049 1.21657 1.01392 0.87335 1.02349 0.94117 0.75908 0.96631 0.96733 0.90408 0.90188 0.90190 0.90802 0.91883 0.91066 0.84702 0.85180 0.85103 0.84904 0.83498 0.84982 0.84912 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.85 13.06 55.49 0.72 -29.12 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.89 24.30 29.55 -169.99 -5.02 19.27 16 4 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 7 C -0.24 -7.42 9.99 -15.06 -0.15 -7.57 16 8 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.72 -20.07 4.13 -59.91 -0.25 -20.32 16 10 C 0.15 3.21 5.61 -4.04 -0.02 3.19 16 11 C 0.13 2.29 3.07 -66.95 -0.21 2.08 16 12 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 13 C -0.12 -1.47 6.44 -24.90 -0.16 -1.63 16 14 C -0.13 -1.25 7.08 -24.58 -0.17 -1.42 16 15 C 0.10 1.11 5.24 -2.53 -0.01 1.10 16 16 N -0.61 -10.08 3.06 -164.21 -0.50 -10.58 16 17 C 0.54 10.61 6.26 -12.45 -0.08 10.53 16 18 O -0.42 -10.66 11.31 5.29 0.06 -10.60 16 19 C -0.11 -1.81 5.38 -104.82 -0.56 -2.38 16 20 C -0.08 -1.02 8.00 -39.20 -0.31 -1.33 16 21 C -0.13 -1.26 10.02 -39.62 -0.40 -1.65 16 22 C -0.09 -0.90 10.03 -39.53 -0.40 -1.30 16 23 C -0.13 -1.55 9.74 -39.45 -0.38 -1.94 16 24 C 0.17 2.76 5.86 -83.36 -0.49 2.27 16 25 N -0.40 -7.17 2.13 -60.69 -0.13 -7.30 16 26 C 0.01 0.13 9.07 -16.62 -0.15 -0.02 16 27 C -0.18 -3.39 10.86 -39.76 -0.43 -3.82 16 28 C -0.18 -3.38 10.86 -39.76 -0.43 -3.81 16 29 C 0.00 -0.02 11.19 -16.62 -0.19 -0.21 16 30 H 0.25 8.01 8.31 -40.82 -0.34 7.67 16 31 H 0.40 11.99 5.10 -40.82 -0.21 11.78 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.65 7.25 -51.93 -0.38 0.28 16 39 H 0.07 0.72 6.87 -51.93 -0.36 0.36 16 40 H 0.14 1.51 5.93 -52.49 -0.31 1.19 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.15 2.50 8.03 -52.48 -0.42 2.08 16 45 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 46 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 47 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -38.42 379.08 -10.75 -49.17 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.70 Total: 11.95 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.65 Total: -8.19 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -0.16 Total: -67.32 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.06 Total: -10.60 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.02 Total: 19.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.42 -10.75 -49.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324219543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.020 kcal (2) G-P(sol) polarization free energy of solvation -38.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds