Wall clock time and date at job start Sat Apr 11 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47358 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47184 * 120.00145 * 3 2 1 6 6 H 1.48502 * 109.47194 * 239.99850 * 3 2 1 7 7 C 1.38811 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00408 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00092 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47010 * 187.44820 * 10 9 7 12 12 H 1.08994 * 109.87639 * 314.42116 * 11 10 9 13 13 C 1.54324 * 109.88402 * 193.40219 * 11 10 9 14 14 C 1.55153 * 102.94607 * 218.39045 * 13 11 10 15 15 C 1.54910 * 101.58164 * 35.50448 * 14 13 11 16 16 N 1.47028 * 109.87967 * 75.59980 * 11 10 9 17 17 C 1.34772 * 125.64774 * 298.33239 * 16 11 10 18 18 O 1.21587 * 119.99806 * 2.93544 * 17 16 11 19 19 C 1.47577 * 120.00276 * 182.93846 * 17 16 11 20 20 C 1.39656 * 120.18829 * 319.35168 * 19 17 16 21 21 C 1.37833 * 119.91412 * 179.76761 * 20 19 17 22 22 C 1.38539 * 120.30881 * 0.50925 * 21 20 19 23 23 C 1.38064 * 120.39361 * 359.74246 * 22 21 20 24 24 C 1.38763 * 120.07187 * 0.02562 * 23 22 21 25 25 N 1.39670 * 120.15189 * 180.02562 * 24 23 22 26 26 C 1.36655 * 125.67881 * 124.47859 * 25 24 23 27 27 C 1.34808 * 108.19118 * 179.83270 * 26 25 24 28 28 C 1.40985 * 107.48632 * 0.42450 * 27 26 25 29 29 C 1.34806 * 107.48943 * 359.73455 * 28 27 26 30 30 H 0.96999 * 119.99608 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99976 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47289 * 307.44601 * 10 9 7 33 33 H 1.08996 * 109.47574 * 67.44969 * 10 9 7 34 34 H 1.09004 * 110.71784 * 336.75759 * 13 11 10 35 35 H 1.09003 * 110.71996 * 100.02683 * 13 11 10 36 36 H 1.08998 * 111.00338 * 153.57399 * 14 13 11 37 37 H 1.09002 * 111.00752 * 277.42790 * 14 13 11 38 38 H 1.09000 * 110.36669 * 81.82445 * 15 14 13 39 39 H 1.09000 * 110.36925 * 204.15095 * 15 14 13 40 40 H 1.07995 * 120.04489 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.84883 * 180.25274 * 21 20 19 42 42 H 1.08001 * 119.79978 * 179.72007 * 22 21 20 43 43 H 1.08001 * 119.95982 * 180.02562 * 23 22 21 44 44 H 1.08003 * 125.90139 * 359.97438 * 26 25 24 45 45 H 1.07998 * 126.25674 * 180.18011 * 27 26 25 46 46 H 1.08005 * 126.25848 * 179.76031 * 28 27 26 47 47 H 1.08001 * 125.90383 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0742 -4.8136 -0.1875 12 1 0.2103 -4.6740 0.4621 13 6 1.7685 -6.1517 0.1429 14 6 1.1892 -7.1168 -0.9249 15 6 1.0567 -6.1802 -2.1516 16 7 0.6426 -4.8809 -1.5914 17 6 -0.0221 -3.9150 -2.2559 18 8 -0.2670 -2.8579 -1.7073 19 6 -0.4527 -4.1403 -3.6494 20 6 0.3926 -4.7940 -4.5486 21 6 -0.0172 -5.0057 -5.8475 22 6 -1.2606 -4.5636 -6.2692 23 6 -2.1043 -3.9113 -5.3923 24 6 -1.7100 -3.6938 -4.0798 25 7 -2.5624 -3.0346 -3.1912 26 6 -2.9865 -3.5191 -1.9858 27 6 -3.7910 -2.5966 -1.4210 28 6 -3.8762 -1.5067 -2.3113 29 6 -3.1159 -1.8003 -3.3851 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 2.7808 -3.6591 -0.8164 33 1 2.5810 -3.7745 0.9485 34 1 2.8496 -6.0619 0.0357 35 1 1.5059 -6.4848 1.1469 36 1 1.8813 -7.9335 -1.1299 37 1 0.2156 -7.4995 -0.6185 38 1 2.0154 -6.0851 -2.6615 39 1 0.2974 -6.5573 -2.8367 40 1 1.3644 -5.1369 -4.2256 41 1 0.6357 -5.5150 -6.5409 42 1 -1.5715 -4.7299 -7.2900 43 1 -3.0723 -3.5700 -5.7284 44 1 -2.7210 -4.4748 -1.5585 45 1 -4.2837 -2.6792 -0.4635 46 1 -4.4461 -0.6017 -2.1604 47 1 -2.9693 -1.1691 -4.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324219543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:26 Heat of formation + Delta-G solvation = 75.143764 kcal Electronic energy + Delta-G solvation = -30825.031193 eV Core-core repulsion = 26974.521900 eV Total energy + Delta-G solvation = -3850.509293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54927 -41.11547 -39.55396 -38.13943 -36.20183 -34.08715 -33.57164 -32.85393 -31.61149 -30.24900 -29.78468 -29.70187 -26.70956 -25.50238 -24.30947 -23.93795 -22.92402 -22.15279 -21.21685 -20.99715 -20.24182 -19.24419 -18.94227 -18.06143 -17.52487 -16.90809 -16.60087 -16.39298 -15.85032 -15.43994 -15.22832 -15.06119 -14.92233 -14.80095 -14.59697 -14.46630 -14.34287 -14.02936 -13.72413 -13.52274 -13.28988 -13.18964 -13.09806 -12.99658 -12.88398 -12.79628 -12.66725 -12.35591 -12.32627 -12.04692 -11.88839 -11.61557 -11.49858 -10.87934 -10.56756 -10.33749 -10.01664 -9.50189 -9.21625 -9.03459 -8.75159 -7.76050 -5.04236 -0.19671 0.13171 1.38015 1.40338 1.42899 1.49000 1.96350 2.00999 2.12284 2.17437 2.58466 2.68236 3.46769 3.50600 3.65375 3.76072 3.81667 3.96693 4.00532 4.06462 4.24518 4.25886 4.29901 4.31357 4.39767 4.44541 4.52679 4.62600 4.65512 4.75605 4.80893 4.84691 4.86866 4.91733 4.99813 5.13697 5.15028 5.16769 5.24936 5.33819 5.35400 5.38496 5.40185 5.48316 5.62268 5.77080 6.05589 6.28138 6.37694 6.63005 6.69165 7.37714 7.54982 8.36985 8.63571 9.43398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.005638 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.317605 B = 4965.149650 C = 6583.633374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.071 4.071 3 Si 0.963 3.037 4 H -0.296 1.296 5 H -0.276 1.276 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.060 0.940 9 N -0.731 5.731 10 C 0.145 3.855 11 C 0.134 3.866 12 H 0.043 0.957 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.091 3.909 16 N -0.613 5.613 17 C 0.530 3.470 18 O -0.495 6.495 19 C -0.140 4.140 20 C -0.082 4.082 21 C -0.110 4.110 22 C -0.075 4.075 23 C -0.127 4.127 24 C 0.134 3.866 25 N -0.397 5.397 26 C 0.001 3.999 27 C -0.209 4.209 28 C -0.206 4.206 29 C -0.013 4.013 30 H 0.240 0.760 31 H 0.388 0.612 32 H 0.009 0.991 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.137 0.863 46 H 0.143 0.857 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -21.118 -14.123 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.265 4.265 3 Si 0.792 3.208 4 H -0.222 1.222 5 H -0.202 1.202 6 H -0.213 1.213 7 C -0.381 4.381 8 H 0.078 0.922 9 N -0.380 5.380 10 C 0.016 3.984 11 C 0.030 3.970 12 H 0.061 0.939 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.030 4.030 16 N -0.350 5.350 17 C 0.318 3.682 18 O -0.367 6.367 19 C -0.145 4.145 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.146 4.146 24 C 0.043 3.957 25 N -0.069 5.069 26 C -0.126 4.126 27 C -0.233 4.233 28 C -0.231 4.231 29 C -0.140 4.140 30 H 0.049 0.951 31 H 0.227 0.773 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.165 0.835 41 H 0.192 0.808 42 H 0.192 0.808 43 H 0.163 0.837 44 H 0.168 0.832 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.589 -20.508 -14.053 24.912 hybrid contribution 0.077 1.848 0.728 1.988 sum -1.511 -18.660 -13.326 22.980 Atomic orbital electron populations 1.69974 1.06146 1.24598 1.58339 1.25496 0.96253 1.00435 1.04270 0.85387 0.77231 0.80278 0.77860 1.22246 1.20216 1.21254 1.19430 0.90542 0.86246 1.41919 0.92238 1.42987 1.06759 1.00020 1.88228 1.21149 0.93905 0.86458 0.96838 1.21793 0.95962 0.96625 0.82571 0.93883 1.22627 1.00734 0.90830 1.01051 1.22789 1.02792 0.97123 0.92804 1.22737 1.00666 0.81825 0.97807 1.48457 1.56713 1.17651 1.12147 1.18487 0.79454 0.83701 0.86605 1.91069 1.53103 1.24719 1.67806 1.20126 0.94828 1.04667 0.94856 1.21613 0.99058 0.95680 0.93764 1.21642 0.96989 0.99209 0.94881 1.21658 0.92889 0.94177 1.00629 1.21350 1.01942 1.00649 0.90652 1.18077 0.89170 0.97295 0.91148 1.41212 1.35746 1.14590 1.15399 1.21599 1.02293 1.00921 0.87819 1.20984 1.05802 0.95665 1.00853 1.21032 1.06023 1.00448 0.95560 1.22021 1.01262 0.87895 1.02843 0.95089 0.77294 0.97349 0.96190 0.89393 0.88694 0.86335 0.90341 0.90165 0.89462 0.83505 0.80804 0.80776 0.83697 0.83249 0.84519 0.83953 0.81033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -65.18 13.06 21.65 0.28 -64.90 16 2 C -0.07 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.96 51.62 29.55 68.60 2.03 53.64 16 4 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 5 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 7 C -0.25 -15.85 9.99 84.03 0.84 -15.01 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -42.96 4.13 -343.46 -1.42 -44.38 16 10 C 0.14 6.53 5.61 86.38 0.48 7.02 16 11 C 0.13 4.71 3.07 45.34 0.14 4.85 16 12 H 0.04 1.75 8.11 -2.39 -0.02 1.73 16 13 C -0.11 -2.45 6.44 31.78 0.20 -2.25 16 14 C -0.12 -1.77 7.08 31.99 0.23 -1.55 16 15 C 0.09 1.81 5.24 86.86 0.45 2.27 16 16 N -0.61 -20.23 3.06 -791.72 -2.43 -22.65 16 17 C 0.53 21.69 6.26 86.71 0.54 22.23 16 18 O -0.49 -26.78 11.31 -3.99 -0.05 -26.82 16 19 C -0.14 -4.55 5.38 -20.00 -0.11 -4.66 16 20 C -0.08 -1.83 8.00 22.52 0.18 -1.65 16 21 C -0.11 -1.59 10.02 22.25 0.22 -1.37 16 22 C -0.08 -1.10 10.03 22.30 0.22 -0.88 16 23 C -0.13 -2.83 9.74 22.35 0.22 -2.61 16 24 C 0.13 4.31 5.86 38.49 0.23 4.53 16 25 N -0.40 -14.99 2.13 -345.93 -0.74 -15.73 16 26 C 0.00 0.06 9.07 83.15 0.75 0.81 16 27 C -0.21 -8.54 10.86 22.16 0.24 -8.30 16 28 C -0.21 -8.25 10.86 22.15 0.24 -8.01 16 29 C -0.01 -0.50 11.19 83.15 0.93 0.43 16 30 H 0.24 16.29 8.31 -92.71 -0.77 15.52 16 31 H 0.39 24.88 5.10 -92.71 -0.47 24.41 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.02 0.89 8.09 -2.39 -0.02 0.88 16 34 H 0.09 1.75 7.85 -2.39 -0.02 1.73 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.36 7.25 -2.39 -0.02 1.34 16 39 H 0.09 1.49 6.87 -2.39 -0.02 1.48 16 40 H 0.15 2.80 5.93 -2.91 -0.02 2.78 16 41 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.15 5.59 8.03 -2.91 -0.02 5.56 16 45 H 0.14 5.17 8.06 -2.91 -0.02 5.14 16 46 H 0.14 5.13 8.06 -2.91 -0.02 5.11 16 47 H 0.17 5.66 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -92.30 379.08 4.67 -87.63 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: 0.50 Total: 41.49 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 6.49 Total: -8.29 kcal Atomic # 7 Polarization: -143.36 SS G_CDS: -4.30 Total: -147.66 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.03 Total: 53.64 kcal Total: -92.30 4.67 -87.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324219543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.774 kcal (2) G-P(sol) polarization free energy of solvation -92.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds