Wall clock time and date at job start Sat Apr 11 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48504 * 109.47090 * 269.99835 * 3 2 1 5 5 H 1.48490 * 109.47356 * 30.00290 * 3 2 1 6 6 H 1.48506 * 109.46853 * 150.00454 * 3 2 1 7 7 C 1.38807 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00312 * 186.08928 * 9 7 2 11 11 C 1.52998 * 112.84540 * 66.52471 * 10 9 7 12 12 N 1.46504 * 109.47462 * 49.00535 * 11 10 9 13 13 C 1.34775 * 120.00303 * 177.57366 * 12 11 10 14 14 O 1.21731 * 119.99881 * 0.02562 * 13 12 11 15 15 C 1.46392 * 120.00363 * 179.97438 * 13 12 11 16 16 N 1.37638 * 126.32523 * 0.02939 * 15 13 12 17 17 H 0.97002 * 125.55000 * 0.02562 * 16 15 13 18 18 C 1.35638 * 108.89772 * 179.97438 * 16 15 13 19 19 C 1.35118 * 109.22276 * 0.02562 * 18 16 15 20 20 C 1.39097 * 126.32935 * 179.71423 * 15 13 12 21 21 C 1.48176 * 126.63401 * 0.04359 * 20 15 13 22 22 C 1.39445 * 120.12825 * 309.71929 * 21 20 15 23 23 C 1.37993 * 119.86861 * 179.78938 * 22 21 20 24 24 C 1.38342 * 120.12604 * 0.46775 * 23 22 21 25 25 C 1.38341 * 120.26703 * 359.78775 * 24 23 22 26 26 C 1.37985 * 120.13469 * 359.97438 * 25 24 23 27 27 C 1.53768 * 113.61436 * 295.32654 * 10 9 7 28 28 C 1.53781 * 87.08561 * 270.88412 * 27 10 9 29 29 C 1.53780 * 87.07747 * 334.56898 * 28 27 10 30 30 H 0.97001 * 120.00363 * 359.97438 * 1 2 3 31 31 H 0.97010 * 119.99695 * 6.09061 * 9 7 2 32 32 H 1.09005 * 109.46644 * 169.00022 * 11 10 9 33 33 H 1.08994 * 109.47317 * 288.99933 * 11 10 9 34 34 H 0.96999 * 119.99784 * 357.57347 * 12 11 10 35 35 H 1.08001 * 125.38423 * 179.97438 * 18 16 15 36 36 H 1.08000 * 126.10130 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.07232 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.93845 * 180.25234 * 23 22 21 39 39 H 1.07997 * 119.86470 * 179.76278 * 24 23 22 40 40 H 1.08005 * 119.93333 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.07020 * 180.02562 * 26 25 24 42 42 H 1.09007 * 113.61650 * 156.33527 * 27 10 9 43 43 H 1.09005 * 113.69326 * 25.44621 * 27 10 9 44 44 H 1.09001 * 113.61279 * 89.11834 * 28 27 10 45 45 H 1.09003 * 113.61073 * 220.02278 * 28 27 10 46 46 H 1.08999 * 113.61247 * 139.98375 * 29 28 27 47 47 H 1.09007 * 113.61447 * 270.88275 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0520 -3.6532 0.1335 11 6 2.7132 -3.8163 1.5035 12 7 1.7380 -3.5175 2.5552 13 6 2.0849 -3.6434 3.8514 14 8 3.2087 -4.0051 4.1484 15 6 1.1107 -3.3443 4.9024 16 7 -0.1878 -2.9277 4.7158 17 1 -0.6155 -2.7819 3.8574 18 6 -0.7723 -2.7554 5.9275 19 6 0.1201 -3.0510 6.8980 20 6 1.3242 -3.4344 6.2739 21 6 2.5767 -3.8490 6.9483 22 6 3.2205 -5.0258 6.5671 23 6 4.3889 -5.4046 7.1958 24 6 4.9166 -4.6245 8.2091 25 6 4.2797 -3.4587 8.5953 26 6 3.1133 -3.0671 7.9706 27 6 2.9944 -3.9502 -1.0447 28 6 1.8014 -4.6454 -1.7217 29 6 1.2384 -4.8805 -0.3100 30 1 -0.4851 0.8400 0.0004 31 1 0.3596 -2.3904 -0.0893 32 1 3.0668 -4.8412 1.6165 33 1 3.5562 -3.1301 1.5841 34 1 0.8427 -3.2289 2.3186 35 1 -1.7898 -2.4322 6.0908 36 1 -0.0589 -3.0066 7.9621 37 1 2.8074 -5.6377 5.7787 38 1 4.8906 -6.3137 6.8987 39 1 5.8293 -4.9269 8.7009 40 1 4.6962 -2.8539 9.3873 41 1 2.6171 -2.1566 8.2727 42 1 3.8092 -4.6288 -0.7919 43 1 3.3346 -3.0573 -1.5693 44 1 1.1925 -3.9754 -2.3286 45 1 2.0699 -5.5641 -2.2432 46 1 0.1600 -4.7379 -0.2407 47 1 1.5731 -5.8134 0.1437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326912022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:40 Heat of formation + Delta-G solvation = 66.724227 kcal Electronic energy + Delta-G solvation = -29257.580955 eV Core-core repulsion = 25406.706563 eV Total energy + Delta-G solvation = -3850.874392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19698 -39.26372 -38.56738 -38.10029 -34.04472 -33.32779 -32.34840 -30.69648 -30.26810 -29.83259 -28.65610 -26.99015 -25.34359 -23.99963 -23.19271 -22.31056 -22.09099 -21.21018 -20.22339 -19.21477 -18.84923 -18.01471 -17.19557 -16.45697 -15.70526 -15.61191 -15.18616 -14.82306 -14.78708 -14.49708 -14.36656 -14.03754 -13.69376 -13.54652 -13.40400 -13.23410 -13.12835 -12.73983 -12.68656 -12.60902 -12.14162 -12.10210 -11.74326 -11.28677 -11.08738 -10.98102 -10.88514 -10.84682 -10.42892 -10.33582 -10.20621 -9.81289 -9.71658 -9.55331 -9.19106 -8.97378 -8.64414 -8.57338 -8.34079 -7.80369 -7.16502 -5.93492 -3.23565 1.25483 1.69493 1.89040 2.83888 3.20852 3.35092 3.42037 3.43720 3.60365 3.74225 4.10488 4.46179 4.91852 5.09577 5.12532 5.13895 5.14314 5.20499 5.22848 5.26714 5.34468 5.37891 5.44121 5.46424 5.70252 5.71994 5.80547 5.81710 5.98329 6.07458 6.13253 6.15775 6.25027 6.27081 6.31141 6.32783 6.44982 6.59327 6.65719 6.72793 6.76211 6.80399 6.87961 6.92386 6.99164 7.06129 7.24181 7.46044 7.62444 8.01198 8.25297 8.62246 9.37245 9.88574 10.24256 11.28322 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003515 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.533959 B = 7964.594883 C = 8746.508134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.172 3.828 11 C 0.124 3.876 12 N -0.700 5.700 13 C 0.577 3.423 14 O -0.533 6.533 15 C -0.027 4.027 16 N -0.532 5.532 17 H 0.422 0.578 18 C 0.020 3.980 19 C -0.199 4.199 20 C -0.058 4.058 21 C -0.009 4.009 22 C -0.064 4.064 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.107 4.107 27 C -0.150 4.150 28 C -0.129 4.129 29 C -0.144 4.144 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.170 0.830 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -10.612 11.457 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.341 5.341 10 C 0.079 3.921 11 C -0.002 4.002 12 N -0.349 5.349 13 C 0.363 3.637 14 O -0.411 6.411 15 C -0.141 4.141 16 N -0.127 5.127 17 H 0.261 0.739 18 C -0.116 4.116 19 C -0.223 4.223 20 C -0.067 4.067 21 C -0.009 4.009 22 C -0.082 4.082 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.126 4.126 27 C -0.190 4.190 28 C -0.166 4.166 29 C -0.182 4.182 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.188 0.812 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.739 -10.684 11.466 15.690 hybrid contribution -0.545 1.469 -0.665 1.702 sum 0.194 -9.216 10.801 14.199 Atomic orbital electron populations 1.69634 1.05031 1.25816 1.57596 1.24688 0.95473 0.97596 1.02529 0.86244 0.78918 0.83837 0.77576 1.21637 1.21781 1.20667 1.19107 0.91123 0.83507 1.42767 0.91121 1.42074 1.06009 0.99146 1.86887 1.20859 0.93113 0.87399 0.90718 1.21783 0.91806 0.99160 0.87435 1.45665 1.16843 1.67566 1.04856 1.16988 0.86525 0.78429 0.81715 1.90838 1.19912 1.48064 1.82246 1.20624 0.85687 1.13136 0.94695 1.42066 1.10393 1.51203 1.09055 0.73939 1.21869 0.99567 1.06453 0.83680 1.20821 0.92900 1.09592 0.98956 1.18502 0.93910 1.04235 0.90032 1.18080 0.93110 0.94529 0.95201 1.21108 0.94560 0.95529 0.96983 1.20998 0.96389 1.00127 0.96916 1.21089 0.99752 0.95480 0.97987 1.20942 0.96106 0.97199 1.00622 1.21125 0.96156 0.99180 0.96089 1.23290 0.96432 1.00496 0.98790 1.22632 0.98499 0.99586 0.95892 1.23190 0.99819 0.97787 0.97356 0.93482 0.78025 0.92374 0.91843 0.76709 0.81246 0.84010 0.86342 0.86510 0.86711 0.86506 0.86327 0.91230 0.90697 0.90060 0.92685 0.91810 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.72 13.07 55.49 0.73 -25.00 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.23 -5.92 9.25 -15.06 -0.14 -6.06 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.70 -15.21 4.48 -46.49 -0.21 -15.41 16 10 C 0.17 3.04 0.93 -131.01 -0.12 2.92 16 11 C 0.12 2.24 5.03 -4.04 -0.02 2.22 16 12 N -0.70 -12.25 5.43 -61.71 -0.33 -12.59 16 13 C 0.58 10.55 7.76 -12.98 -0.10 10.45 16 14 O -0.53 -10.90 13.43 5.16 0.07 -10.83 16 15 C -0.03 -0.43 7.07 -81.66 -0.58 -1.01 16 16 N -0.53 -6.99 5.98 -9.24 -0.06 -7.05 16 17 H 0.42 4.98 8.18 -40.82 -0.33 4.65 16 18 C 0.02 0.23 11.86 -16.98 -0.20 0.02 16 19 C -0.20 -2.51 10.73 -39.67 -0.43 -2.94 16 20 C -0.06 -0.90 5.67 -104.47 -0.59 -1.49 16 21 C -0.01 -0.13 5.27 -104.92 -0.55 -0.69 16 22 C -0.06 -0.99 7.63 -39.22 -0.30 -1.29 16 23 C -0.13 -1.72 10.03 -39.63 -0.40 -2.12 16 24 C -0.12 -1.56 10.04 -39.51 -0.40 -1.95 16 25 C -0.13 -1.64 10.03 -39.64 -0.40 -2.04 16 26 C -0.11 -1.50 9.74 -39.22 -0.38 -1.88 16 27 C -0.15 -2.49 7.27 -25.93 -0.19 -2.68 16 28 C -0.13 -1.93 7.99 -25.92 -0.21 -2.14 16 29 C -0.14 -2.13 7.37 -25.92 -0.19 -2.32 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 8.86 7.88 -40.82 -0.32 8.54 16 32 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.40 6.75 7.12 -40.82 -0.29 6.46 16 35 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.12 1.90 7.36 -52.48 -0.39 1.51 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.07 1.02 8.10 -51.92 -0.42 0.60 16 43 H 0.07 1.40 7.82 -51.93 -0.41 0.99 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 47 H 0.08 1.03 7.97 -51.92 -0.41 0.62 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -30.28 391.83 -10.97 -41.25 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -6.76 Total: 20.26 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -5.29 Total: -13.28 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.13 Total: -60.05 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.28 -10.97 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326912022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.976 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds