Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48504 * 109.47090 * 269.99835 * 3 2 1 5 5 H 1.48490 * 109.47356 * 30.00290 * 3 2 1 6 6 H 1.48506 * 109.46853 * 150.00454 * 3 2 1 7 7 C 1.38807 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00312 * 186.08928 * 9 7 2 11 11 C 1.52998 * 112.84540 * 66.52471 * 10 9 7 12 12 N 1.46504 * 109.47462 * 49.00535 * 11 10 9 13 13 C 1.34775 * 120.00303 * 177.57366 * 12 11 10 14 14 O 1.21731 * 119.99881 * 0.02562 * 13 12 11 15 15 C 1.46392 * 120.00363 * 179.97438 * 13 12 11 16 16 N 1.37638 * 126.32523 * 0.02939 * 15 13 12 17 17 H 0.97002 * 125.55000 * 0.02562 * 16 15 13 18 18 C 1.35638 * 108.89772 * 179.97438 * 16 15 13 19 19 C 1.35118 * 109.22276 * 0.02562 * 18 16 15 20 20 C 1.39097 * 126.32935 * 179.71423 * 15 13 12 21 21 C 1.48176 * 126.63401 * 0.04359 * 20 15 13 22 22 C 1.39445 * 120.12825 * 309.71929 * 21 20 15 23 23 C 1.37993 * 119.86861 * 179.78938 * 22 21 20 24 24 C 1.38342 * 120.12604 * 0.46775 * 23 22 21 25 25 C 1.38341 * 120.26703 * 359.78775 * 24 23 22 26 26 C 1.37985 * 120.13469 * 359.97438 * 25 24 23 27 27 C 1.53768 * 113.61436 * 295.32654 * 10 9 7 28 28 C 1.53781 * 87.08561 * 270.88412 * 27 10 9 29 29 C 1.53780 * 87.07747 * 334.56898 * 28 27 10 30 30 H 0.97001 * 120.00363 * 359.97438 * 1 2 3 31 31 H 0.97010 * 119.99695 * 6.09061 * 9 7 2 32 32 H 1.09005 * 109.46644 * 169.00022 * 11 10 9 33 33 H 1.08994 * 109.47317 * 288.99933 * 11 10 9 34 34 H 0.96999 * 119.99784 * 357.57347 * 12 11 10 35 35 H 1.08001 * 125.38423 * 179.97438 * 18 16 15 36 36 H 1.08000 * 126.10130 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.07232 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.93845 * 180.25234 * 23 22 21 39 39 H 1.07997 * 119.86470 * 179.76278 * 24 23 22 40 40 H 1.08005 * 119.93333 * 179.97438 * 25 24 23 41 41 H 1.07996 * 120.07020 * 180.02562 * 26 25 24 42 42 H 1.09007 * 113.61650 * 156.33527 * 27 10 9 43 43 H 1.09005 * 113.69326 * 25.44621 * 27 10 9 44 44 H 1.09001 * 113.61279 * 89.11834 * 28 27 10 45 45 H 1.09003 * 113.61073 * 220.02278 * 28 27 10 46 46 H 1.08999 * 113.61247 * 139.98375 * 29 28 27 47 47 H 1.09007 * 113.61447 * 270.88275 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0520 -3.6532 0.1335 11 6 2.7132 -3.8163 1.5035 12 7 1.7380 -3.5175 2.5552 13 6 2.0849 -3.6434 3.8514 14 8 3.2087 -4.0051 4.1484 15 6 1.1107 -3.3443 4.9024 16 7 -0.1878 -2.9277 4.7158 17 1 -0.6155 -2.7819 3.8574 18 6 -0.7723 -2.7554 5.9275 19 6 0.1201 -3.0510 6.8980 20 6 1.3242 -3.4344 6.2739 21 6 2.5767 -3.8490 6.9483 22 6 3.2205 -5.0258 6.5671 23 6 4.3889 -5.4046 7.1958 24 6 4.9166 -4.6245 8.2091 25 6 4.2797 -3.4587 8.5953 26 6 3.1133 -3.0671 7.9706 27 6 2.9944 -3.9502 -1.0447 28 6 1.8014 -4.6454 -1.7217 29 6 1.2384 -4.8805 -0.3100 30 1 -0.4851 0.8400 0.0004 31 1 0.3596 -2.3904 -0.0893 32 1 3.0668 -4.8412 1.6165 33 1 3.5562 -3.1301 1.5841 34 1 0.8427 -3.2289 2.3186 35 1 -1.7898 -2.4322 6.0908 36 1 -0.0589 -3.0066 7.9621 37 1 2.8074 -5.6377 5.7787 38 1 4.8906 -6.3137 6.8987 39 1 5.8293 -4.9269 8.7009 40 1 4.6962 -2.8539 9.3873 41 1 2.6171 -2.1566 8.2727 42 1 3.8092 -4.6288 -0.7919 43 1 3.3346 -3.0573 -1.5693 44 1 1.1925 -3.9754 -2.3286 45 1 2.0699 -5.5641 -2.2432 46 1 0.1600 -4.7379 -0.2407 47 1 1.5731 -5.8134 0.1437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326912022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = 49.439212 kcal Electronic energy + Delta-G solvation = -29258.330490 eV Core-core repulsion = 25406.706563 eV Total energy + Delta-G solvation = -3851.623926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28582 -40.65782 -39.60362 -39.47729 -35.47515 -35.17352 -33.42112 -31.96338 -31.72926 -31.04287 -29.82517 -28.33933 -26.73917 -25.76946 -24.40007 -23.36336 -23.30071 -22.46027 -21.31086 -20.44181 -20.02473 -19.45455 -19.09661 -17.51032 -17.11721 -16.84667 -16.52509 -16.32696 -15.90932 -15.83845 -15.68364 -15.50111 -15.13230 -14.83701 -14.78172 -14.41278 -14.19011 -14.14038 -13.79510 -13.65098 -13.60848 -13.12753 -13.07706 -13.01962 -12.95248 -12.52090 -12.23629 -11.98975 -11.96064 -11.87153 -11.67446 -11.51755 -11.16822 -10.95837 -10.78023 -10.26106 -10.01017 -9.68608 -9.39035 -9.03105 -8.91515 -7.97639 -5.24017 0.12663 0.63856 0.80287 1.40915 1.43971 1.49477 1.83963 2.14055 2.29974 2.41840 2.51932 3.04394 3.35259 3.71476 3.76499 3.89397 3.93671 3.98966 4.07277 4.13769 4.19655 4.21209 4.32020 4.35768 4.44759 4.60673 4.70832 4.79721 4.80315 4.82431 4.87279 4.89054 4.95770 5.10697 5.16622 5.23359 5.27838 5.28747 5.38196 5.45896 5.58160 5.62012 5.66929 5.69623 5.74507 5.82698 5.94766 6.21770 6.26848 6.47837 6.65223 7.23096 7.34145 8.04633 8.30588 9.24084 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003515 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.533959 B = 7964.594883 C = 8746.508134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.057 4.057 3 Si 0.949 3.051 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.061 0.939 9 N -0.702 5.702 10 C 0.159 3.841 11 C 0.132 3.868 12 N -0.698 5.698 13 C 0.573 3.427 14 O -0.564 6.564 15 C -0.068 4.068 16 N -0.529 5.529 17 H 0.427 0.573 18 C 0.044 3.956 19 C -0.211 4.211 20 C -0.065 4.065 21 C -0.033 4.033 22 C -0.085 4.085 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.119 4.119 27 C -0.150 4.150 28 C -0.120 4.120 29 C -0.127 4.127 30 H 0.250 0.750 31 H 0.379 0.621 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.400 0.600 35 H 0.214 0.786 36 H 0.165 0.835 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 -11.453 12.740 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.250 4.250 3 Si 0.781 3.219 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.210 1.210 7 C -0.353 4.353 8 H 0.079 0.921 9 N -0.342 5.342 10 C 0.067 3.933 11 C 0.006 3.994 12 N -0.347 5.347 13 C 0.361 3.639 14 O -0.444 6.444 15 C -0.182 4.182 16 N -0.125 5.125 17 H 0.266 0.734 18 C -0.092 4.092 19 C -0.234 4.234 20 C -0.075 4.075 21 C -0.034 4.034 22 C -0.103 4.103 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.137 4.137 27 C -0.190 4.190 28 C -0.157 4.157 29 C -0.165 4.165 30 H 0.059 0.941 31 H 0.212 0.788 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.236 0.764 35 H 0.230 0.770 36 H 0.182 0.818 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.510 -11.553 12.729 17.198 hybrid contribution -0.419 1.665 -0.985 1.979 sum 0.091 -9.888 11.745 15.353 Atomic orbital electron populations 1.69724 1.05679 1.25669 1.59542 1.25175 0.96131 0.99669 1.04016 0.85506 0.77720 0.81474 0.77242 1.21586 1.22257 1.21015 1.19213 0.90802 0.84868 1.40376 0.92095 1.42055 1.05697 0.99706 1.86745 1.21127 0.94274 0.87070 0.90788 1.21678 0.90998 0.99059 0.87698 1.45628 1.16735 1.67618 1.04749 1.17335 0.86669 0.77735 0.82138 1.90801 1.21299 1.49565 1.82709 1.20376 0.86867 1.16501 0.94409 1.42099 1.09480 1.50855 1.10028 0.73394 1.22618 1.00824 1.03380 0.82406 1.21153 0.91999 1.09824 1.00412 1.18867 0.94916 1.03552 0.90135 1.18334 0.93793 0.95081 0.96164 1.21106 0.95779 0.96028 0.97389 1.21279 0.95907 1.01056 0.97202 1.21472 1.00528 0.95038 0.97304 1.21340 0.95378 0.97382 1.00781 1.21365 0.96945 0.99492 0.95921 1.23315 0.97536 1.00179 0.97935 1.22552 0.97012 1.00190 0.95938 1.23145 0.99584 0.96969 0.96811 0.94111 0.78768 0.90870 0.95133 0.76439 0.76960 0.81771 0.88129 0.84967 0.83696 0.83572 0.85211 0.88911 0.93373 0.91917 0.89662 0.91584 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.35 13.07 21.65 0.28 -53.06 16 2 C -0.06 -3.05 5.50 84.86 0.47 -2.59 16 3 Si 0.95 45.41 29.55 68.60 2.03 47.44 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.22 -11.34 9.25 84.03 0.78 -10.57 16 8 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 9 N -0.70 -30.82 4.48 -300.99 -1.35 -32.17 16 10 C 0.16 5.57 0.93 4.12 0.00 5.57 16 11 C 0.13 4.80 5.03 86.38 0.43 5.23 16 12 N -0.70 -25.00 5.43 -467.34 -2.54 -27.53 16 13 C 0.57 21.68 7.76 86.37 0.67 22.35 16 14 O -0.56 -24.08 13.43 -4.45 -0.06 -24.14 16 15 C -0.07 -2.23 7.07 40.56 0.29 -1.94 16 16 N -0.53 -13.51 5.98 -183.14 -1.10 -14.61 16 17 H 0.43 9.83 8.18 -92.71 -0.76 9.07 16 18 C 0.04 0.89 11.86 83.39 0.99 1.88 16 19 C -0.21 -5.00 10.73 22.21 0.24 -4.76 16 20 C -0.07 -2.04 5.67 -19.77 -0.11 -2.15 16 21 C -0.03 -1.05 5.27 -20.05 -0.11 -1.16 16 22 C -0.08 -2.71 7.63 22.50 0.17 -2.54 16 23 C -0.14 -3.68 10.03 22.24 0.22 -3.46 16 24 C -0.13 -2.91 10.04 22.32 0.22 -2.69 16 25 C -0.13 -3.05 10.03 22.23 0.22 -2.83 16 26 C -0.12 -3.25 9.74 22.50 0.22 -3.03 16 27 C -0.15 -4.84 7.27 31.12 0.23 -4.61 16 28 C -0.12 -3.36 7.99 31.12 0.25 -3.11 16 29 C -0.13 -3.53 7.37 31.12 0.23 -3.30 16 30 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.38 17.59 7.88 -92.70 -0.73 16.86 16 32 H 0.07 2.42 7.95 -2.38 -0.02 2.40 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.40 13.82 7.12 -92.71 -0.66 13.16 16 35 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.10 3.45 7.36 -2.91 -0.02 3.43 16 38 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 42 H 0.09 2.56 8.10 -2.38 -0.02 2.54 16 43 H 0.05 1.81 7.82 -2.38 -0.02 1.79 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 47 H 0.10 2.39 7.97 -2.38 -0.02 2.37 16 Total: -1.00 -67.57 391.83 1.55 -66.03 By element: Atomic # 1 Polarization: 52.87 SS G_CDS: -1.14 Total: 51.74 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 5.41 Total: -13.69 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -4.70 Total: -127.37 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -67.57 1.55 -66.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326912022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.467 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds